mRNA_L-elsbetiae_contig19213.5681.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19213.5681.1
Unique NamemRNA_L-elsbetiae_contig19213.5681.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19213.5681.1 vs. uniprot
Match: D7FJ86_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ86_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 4.220e-39
Identity = 91/147 (61.90%), Postives = 99/147 (67.35%), Query Frame = 1 
Query:    1 DDRHDRCLLPGDSGTHSVTDSYDLNSFGSYVDSDEENHEVGLSIDGDEDDEDRDG-----VLEAPSHSSSLPPTATPPPEILLGFGSAHGAAAFSLHGGSXXXXXXXXXAHGRGGGTEALAVGGG----------LAISRHRWSAGR 396
            DDRHD+CLLPGDSGTHSVTDSYDLNSFGS+VDSDE++HEVGLSIDGDE+DE RDG      ++  S   SLP T T PPEILLGFGSAHGAAAFSLHGGS          HG   G+                  LA SRHRWSA R
Sbjct:  560 DDRHDQCLLPGDSGTHSVTDSYDLNSFGSFVDSDEDSHEVGLSIDGDEEDEPRDGXXXXXAIDGSSFHESLPATTTEPPEILLGFGSAHGAAAFSLHGGSGSG-------HGLCHGSXXXXXXXXXXXXXXXXXXLATSRHRWSAER 699
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19213.5681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ86_ECTSI4.220e-3961.90RING-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19213contigL-elsbetiae_contig19213:849..1832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size408
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.0795524-CDS-L-elsbetiae_contig19213:848..9651622815798.0795524-CDS-L-elsbetiae_contig19213:848..965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19213 849..965 +
1691683109.5829315-CDS-L-elsbetiae_contig19213:848..9651691683109.5829315-CDS-L-elsbetiae_contig19213:848..965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19213 849..965 +
1622815798.093311-CDS-L-elsbetiae_contig19213:1543..18311622815798.093311-CDS-L-elsbetiae_contig19213:1543..1831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19213 1544..1831 +
1691683109.5988514-CDS-L-elsbetiae_contig19213:1543..18311691683109.5988514-CDS-L-elsbetiae_contig19213:1543..1831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19213 1544..1831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19213.5681.1prot_L-elsbetiae_contig19213.5681.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19213 849..1831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19213.5681.1

>prot_L-elsbetiae_contig19213.5681.1 ID=prot_L-elsbetiae_contig19213.5681.1|Name=mRNA_L-elsbetiae_contig19213.5681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
DDRHDRCLLPGDSGTHSVTDSYDLNSFGSYVDSDEENHEVGLSIDGDEDD
EDRDGVLEAPSHSSSLPPTATPPPEILLGFGSAHGAAAFSLHGGSGGSGG
SGGSAHGRGGGTEALAVGGGLAISRHRWSAGRNAG
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mRNA from alignment at L-elsbetiae_contig19213:849..1832+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19213.5681.1 ID=mRNA_L-elsbetiae_contig19213.5681.1|Name=mRNA_L-elsbetiae_contig19213.5681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=984bp|location=Sequence derived from alignment at L-elsbetiae_contig19213:849..1832+ (Laminarionema elsbetiae ELsaHSoW15)
GATGACCGACACGACCGATGCCTGCTACCGGGGGACTCGGGTACCCACTC
GGTCACGGACAGTTACGACCTCAACAGCTTCGGCAGCTACGTTGACTCAG
ACGAGGAGAATCACGAGGTGGGCTCACGAAACGGCTCGTGGTGGTGGCTG
CAGTGGGCCTGTGTCCTCAATCCTCTTATTGTGGGCGCGTTATCTTCCTC
CACACGTATTGCATACCACCTACTTTGCATACATTTACAATTTTTATCGC
TACGCGCACGAGGGGTGTTTCCTCCAACGCGCTTCCAAAGCACGCGCTGA
ATCCTTGTGGGCGCTTTTAGTTCCCTTGTTGTTTCTCACATTAGCTCTCT
AGTCCAAAACATCCTTGAGGGGGGGGGGGGGGAGCGTGGTCACGTATTGT
ACTAGGACATGACAACAGTCATCACCACGCACACAAGGGGGGTTGCGTTG
AACGCGCTTACAAATCACGCGCTTCTCGATAGCAGCTGTTCCGCGCCGCG
ACCCTTACTCTTTCAGGCGTCCCTCCTCGGCACGCGCCAAACGACGGCGC
GCCCGCCGAACTATGTTGTGCTTGTACACGAGACGTCCGTCCTGCTCCAC
CGCTCAACAACACGAGACCGCTCTAACCCACCCCATCCTGCCCATTCAAC
TCCCGACCCCCACTCCCACCCAAAACAAAAAATAAAACGAAACAGGTGGG
ATTGTCGATCGACGGCGACGAGGACGACGAAGACAGGGACGGGGTGCTGG
AGGCCCCCTCCCACTCCTCGTCCTTGCCGCCGACAGCCACGCCGCCCCCG
GAGATACTCCTCGGGTTTGGCAGCGCCCACGGCGCCGCCGCCTTTTCGCT
GCACGGGGGGAGCGGCGGGAGCGGCGGGAGCGGCGGCAGCGCCCACGGGC
GCGGCGGAGGAACGGAGGCGTTGGCGGTAGGCGGTGGCCTCGCGATAAGC
CGGCACAGGTGGAGCGCGGGGCGCAACGCGGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19213:849..1832+

>mRNA_L-elsbetiae_contig19213.5681.1 ID=mRNA_L-elsbetiae_contig19213.5681.1|Name=mRNA_L-elsbetiae_contig19213.5681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig19213:849..1832+ (Laminarionema elsbetiae ELsaHSoW15)
GATGACCGACACGACCGATGCCTGCTACCGGGGGACTCGGGTACCCACTC
GGTCACGGACAGTTACGACCTCAACAGCTTCGGCAGCTACGTTGACTCAG
ACGAGGAGAATCACGAGGATGACCGACACGACCGATGCCTGCTACCGGGG
GACTCGGGTACCCACTCGGTCACGGACAGTTACGACCTCAACAGCTTCGG
CAGCTACGTTGACTCAGACGAGGAGAATCACGAGGTGGGATTGTCGATCG
ACGGCGACGAGGACGACGAAGACAGGGACGGGGTGCTGGAGGCCCCCTCC
CACTCCTCGTCCTTGCCGCCGACAGCCACGCCGCCCCCGGAGATACTCCT
CGGGTTTGGCAGCGCCCACGGCGCCGCCGCCTTTTCGCTGCACGGGGGGA
GCGGCGGGAGCGGCGGGAGCGGCGGCAGCGCCCACGGGCGCGGCGGAGGA
ACGGAGGCGTTGGCGGTAGGCGGTGGCCTCGCGATAAGCCGGCACAGGTG
GAGCGCGGGGCGCAACGCGGGAGTGGGATTGTCGATCGACGGCGACGAGG
ACGACGAAGACAGGGACGGGGTGCTGGAGGCCCCCTCCCACTCCTCGTCC
TTGCCGCCGACAGCCACGCCGCCCCCGGAGATACTCCTCGGGTTTGGCAG
CGCCCACGGCGCCGCCGCCTTTTCGCTGCACGGGGGGAGCGGCGGGAGCG
GCGGGAGCGGCGGCAGCGCCCACGGGCGCGGCGGAGGAACGGAGGCGTTG
GCGGTAGGCGGTGGCCTCGCGATAAGCCGGCACAGGTGGAGCGCGGGGCG
CAACGCGGGA
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