mRNA_L-elsbetiae_contig19210.5678.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig19210.5678.1 vs. uniprot
Match: D8LRN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN5_ECTSI) HSP 1 Score: 366 bits (940), Expect = 1.910e-120 Identity = 193/239 (80.75%), Postives = 207/239 (86.61%), Query Frame = 1 Query: 1 LRSNGQTKKLTVGVLQLSAEVTHYIVPAKESAAYLQAKATNNTDYLLLASDDVSIFFDNSFVTKTSLTSVSPGESFQTFLGIDPAVKITVAPPRKTSKKRGIFSKSNHVTHTHSTCVSNNKKVPVTCVVVDAMPRSSNDIIKVVLKQPVPASVSESEAITDDVLVSAALEMFGEANNDTHAQQQXXXXXXXXTSAATHVAGVIKSPSNHLAWVGKIAPQGEISIPLEYTVEWPTGKEIE 717 ++SN Q KKLTVGVLQLSAEV+HY+VPAKESAAYLQAKATNNTDYLLLAS+DVSIFFDNSFVTKTSLTSVSPGESFQTFLGIDPAVKITVAPPRKTSKKRGIFSKSNHVTHTHST +SN KKVPVTCVVVDAMPRS+N+IIKV LKQP P+ V+ESEAITDDVL SAALEM + + Q A V GVIKSPSNHLAWVGKIAPQGEIS+PLEYTVEWPTGK+IE Sbjct: 439 IKSNAQAKKLTVGVLQLSAEVSHYLVPAKESAAYLQAKATNNTDYLLLASNDVSIFFDNSFVTKTSLTSVSPGESFQTFLGIDPAVKITVAPPRKTSKKRGIFSKSNHVTHTHSTSISNKKKVPVTCVVVDAMPRSTNEIIKVTLKQPPPSGVTESEAITDDVLASAALEMCEAGDRGSSNVQMPP--------AVHGVLGVIKSPSNHLAWVGKIAPQGEISVPLEYTVEWPTGKQIE 669
BLAST of mRNA_L-elsbetiae_contig19210.5678.1 vs. uniprot
Match: D8LRN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN8_ECTSI) HSP 1 Score: 355 bits (912), Expect = 1.120e-116 Identity = 189/241 (78.42%), Postives = 205/241 (85.06%), Query Frame = 1 Query: 1 LRSNGQTKKLTVGVLQLSAEVTHYIVPAKESAAYLQAKATNNTDYLLLASDDVSIFFDNSFVTKTSLTSVSPGESFQTFLGIDPAVKITVAPPRKTSKKRGIFSKSNHVTHTHSTCVSNNKKVPVTCVVVDAMPRSSNDIIKVVLKQPVPASVSESEAITDDVLVSAALEMFG--EANNDTHAQQQXXXXXXXXTSAATHVAGVIKSPSNHLAWVGKIAPQGEISIPLEYTVEWPTGKEIE 717 ++SNGQ KKLTVG LQLS EVTHYIVPAK AAYLQAKATNNTDYLLLAS+DVSIFFDNSFVTKTSLTSVSPGESFQTFLGIDPAVKITVAPPRKTSKKRGIFSKSNHVTHTHST +SNNK VPVTCVVVDA+PRS++DIIKV LK+P+PASVSE EAITDD LVS ALE FG E N++ ++ T A + V GV KSPSNHLAWVGKIAPQG +S+PL YTVEWP KEIE Sbjct: 397 IKSNGQMKKLTVGELQLSVEVTHYIVPAKAPAAYLQAKATNNTDYLLLASNDVSIFFDNSFVTKTSLTSVSPGESFQTFLGIDPAVKITVAPPRKTSKKRGIFSKSNHVTHTHSTLISNNKTVPVTCVVVDALPRSTDDIIKVTLKEPLPASVSECEAITDDSLVSIALETFGGGEGNSNNSTRRPPA------TPAESLVTGVFKSPSNHLAWVGKIAPQGGVSVPLTYTVEWPFEKEIE 631
BLAST of mRNA_L-elsbetiae_contig19210.5678.1 vs. uniprot
Match: D8LRN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN7_ECTSI) HSP 1 Score: 352 bits (904), Expect = 2.400e-115 Identity = 187/241 (77.59%), Postives = 206/241 (85.48%), Query Frame = 1 Query: 1 LRSNGQTKKLTVGVLQLSAEVTHYIVPAKESAAYLQAKATNNTDYLLLASDDVSIFFDNSFVTKTSLTSVSPGESFQTFLGIDPAVKITVAPPRKTSKKRGIFSKSNHVTHTHSTCVSNNKKVPVTCVVVDAMPRSSNDIIKVVLKQPVPASVSESEAITDDVLVSAALEMFG--EANNDTHAQQQXXXXXXXXTSAATHVAGVIKSPSNHLAWVGKIAPQGEISIPLEYTVEWPTGKEIE 717 ++SNGQ KKLTVG LQLS EVTHYIVPAK AAYLQAKATNNTDYLLLAS++VSIFFDNSFVTKTSL+SVSPGESFQTFLGIDPAVKITVAPPRKTS KRGI SKSNHVTHTHST +SN KKVPVTCVVVDAMPRS++D+IKV LK+P+PASVSE EAITDD LVS ALEM+G E N + + Q+ T A + V GV+KSPSNHLAWVGKIAPQG +SIPL+YTVEWP KEIE Sbjct: 408 IKSNGQMKKLTVGELQLSVEVTHYIVPAKAPAAYLQAKATNNTDYLLLASNNVSIFFDNSFVTKTSLSSVSPGESFQTFLGIDPAVKITVAPPRKTSTKRGIISKSNHVTHTHSTLISNTKKVPVTCVVVDAMPRSTDDVIKVTLKEPLPASVSECEAITDDSLVSVALEMYGGGEGNINNNTQRPPA------TPAGSLVTGVMKSPSNHLAWVGKIAPQGGVSIPLKYTVEWPFEKEIE 642
BLAST of mRNA_L-elsbetiae_contig19210.5678.1 vs. uniprot
Match: D8LRN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN6_ECTSI) HSP 1 Score: 350 bits (899), Expect = 4.250e-115 Identity = 184/239 (76.99%), Postives = 202/239 (84.52%), Query Frame = 1 Query: 1 LRSNGQTKKLTVGVLQLSAEVTHYIVPAKESAAYLQAKATNNTDYLLLASDDVSIFFDNSFVTKTSLTSVSPGESFQTFLGIDPAVKITVAPPRKTSKKRGIFSKSNHVTHTHSTCVSNNKKVPVTCVVVDAMPRSSNDIIKVVLKQPVPASVSESEAITDDVLVSAALEMFGEANNDTHAQQQXXXXXXXXTSAATHVAGVIKSPSNHLAWVGKIAPQGEISIPLEYTVEWPTGKEIE 717 ++SNGQ KKLTVGVLQLS EVTHYIVPAK AAYLQAKATNNTDYLLLAS+DVSIFFDNSFVTKTSL SVSPGESFQTFLGIDPAVKI VAPPRKTSKKRGI SKSNHVTHTHST +SNNKKVPVT VVVDAMPRS++D+IKV LK+P+ ASVSE EAITDD LVS ALEMFG + + Q T A + V GVIK+PSNHLAWVGKIAP+G +S+PLEYT+EWP KEI+ Sbjct: 365 IKSNGQMKKLTVGVLQLSVEVTHYIVPAKAPAAYLQAKATNNTDYLLLASNDVSIFFDNSFVTKTSLASVSPGESFQTFLGIDPAVKIIVAPPRKTSKKRGIISKSNHVTHTHSTLISNNKKVPVTFVVVDAMPRSTDDVIKVTLKEPLSASVSECEAITDDALVSIALEMFGSGEGNINNSTQHPPA----TPAGSLVTGVIKNPSNHLAWVGKIAPRGGVSVPLEYTLEWPFEKEID 599
BLAST of mRNA_L-elsbetiae_contig19210.5678.1 vs. uniprot
Match: D8LRM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM9_ECTSI) HSP 1 Score: 303 bits (776), Expect = 5.980e-95 Identity = 155/244 (63.52%), Postives = 191/244 (78.28%), Query Frame = 1 Query: 1 LRSNGQTKKLTVGVLQLSAEVTHYIVPAKESAAYLQAKATNNTDYLLLASDDVSIFFDNSFVTKTSLTSVSPGESFQTFLGIDPAVKITVAPPRKTSKKRGIFSKSNHVTHTHSTCVSNNKKVPVTCVVVDAMPRSSNDIIKVVLKQPVPASVSES-EAITDDVLVSAALEMFGEANNDTHAQQQXXXXXXXXTSAA-----THVAGVIKSPSNHLAWVGKIAPQGEISIPLEYTVEWPTGKEI 714 ++ NG++ KL+V VLQLS +V HY+VP++++ A+LQA ATNNTDYLLLAS+DVSIFFDNSFV KTSLTSVSPGESFQTFLGIDPAVK+ VAPPRKTSK++G+F K +HV H HST +SN KKVPVTCVV++A+P S+N+IIKV L+QP PA V+ES EA+ D+ LV A L MFG D + T+AA T +AG+ K P+NHLAWV K+APQ +ISIPLEYTVEWP GKE+ Sbjct: 526 VKGNGESTKLSVAVLQLSTDVVHYVVPSRDATAFLQANATNNTDYLLLASEDVSIFFDNSFVAKTSLTSVSPGESFQTFLGIDPAVKVKVAPPRKTSKQKGLFGKVDHVAHIHSTVISNKKKVPVTCVVIEALPLSTNEIIKVKLQQPAPAKVTESVEAVNDEALVDAGLAMFGGQGKD---YEDDGGTTKGSTAAAPEVVKTGIAGITKGPTNHLAWVLKVAPQDDISIPLEYTVEWPIGKEV 766
BLAST of mRNA_L-elsbetiae_contig19210.5678.1 vs. uniprot
Match: A0A6H5KAH2_9PHAE (DUF4139 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAH2_9PHAE) HSP 1 Score: 219 bits (558), Expect = 1.420e-64 Identity = 145/278 (52.16%), Postives = 164/278 (58.99%), Query Frame = 1 Query: 1 LRSNGQTKKLTVGVLQLSAEVTHYIVPAKESAAYLQAK-----------------------------ATNNTDYLLLASDDVSIFFDNSFVTKTSLTSVSPGESFQTFLGIDPAVKITVAPPRKTSKKRGIFSKSNHVTHTHS--TCVS-----NNKKVPVTCVVVDAMPRSSNDI--------------------------------IKVVLKQPVPASVSESEAITDDVLVSAALEMFGEANNDTHAQQQXXXXXXXXTSAATHVAGVIKSPSNHL 630 ++SN + KKLTVGVLQLSAEV+HY+VPAKESAAYLQAK ATNNTDYLLLAS+DVSIFFDNSF+TKTSLTSV PGESFQTFLGIDPAVKITV P RKTSKKRGIFSKSNHVTHTH +C + K ++ + A+ S+N + V+LKQP P+SVSESEAITDD L SAALEM EA + + Q A V GVIKSPSNHL Sbjct: 246 IKSNARAKKLTVGVLQLSAEVSHYVVPAKESAAYLQAKEYVSTHRHQGSVPSKVKVSMLLLILHANQATNNTDYLLLASNDVSIFFDNSFITKTSLTSVCPGESFQTFLGIDPAVKITVGPLRKTSKKRGIFSKSNHVTHTHRYRSCTQTITEIDEKSRTISFETLTAVAGSTNATHVSMLASVFRYARNWRFVAHFDRSTSISNKKKVPVILKQPPPSSVSESEAITDDALASAALEMC-EAGDGGSSNVQTPP-------AVNGVLGVIKSPSNHL 515
BLAST of mRNA_L-elsbetiae_contig19210.5678.1 vs. uniprot
Match: A0A836CA38_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA38_9STRA) HSP 1 Score: 200 bits (508), Expect = 1.390e-55 Identity = 129/311 (41.48%), Postives = 168/311 (54.02%), Query Frame = 1 Query: 7 SNGQTKKLTVGVLQLSAEVTHYIVPAKESAAYL------------------------------------------------QAKATNNTDYLLLASDDVSIFFDNSFVTKTSLTSVSPGESFQTFLGIDPAVKIT--------------------------VAPPRKTSKKRGIFSKSNHVTHTHSTCVSNNKKVPVTCVVVDAMPRSSNDIIKVVLKQPVPASVSESEAITDDVLVSAALEMFGEANNDTHAQQQXXXXXXXXTSAATHVAGVIKSPSNHLAWVGKIAPQGEISIPLEYTVEWPTGKEIE 717 S+ KKLTVG+L+LSA+VTHY+VPA E+AAYL +AK N TDYLLLASDDVSIFFDN FVTKTSL +VSPGE F FLG+DPAVK++ APPRKT+++RG+ SK+ VTH H T ++N K VP+T +VDA+PRSS D+IKV+LK P P +V++ ++ LVSAALE+ XXXXXXX T V+++ S L W+ ++ P + +P EY++EWP K IE Sbjct: 569 SDFTAKKLTVGILELSADVTHYVVPALEAAAYLXXXXXXXXXXXXKVRAAREALPLAKRHVXXXXXXXXXXXXXXXXXXXXKAKVLNTTDYLLLASDDVSIFFDNRFVTKTSLRTVSPGEGFDVFLGVDPAVKVSGSTDARARVDAGXXXXXXXXXXXXXXYAPPRKTTRRRGLLSKTQLVTHAHCTTLNNAKAVPITVALVDAVPRSSEDLIKVMLKDPAPNTVTDVSVDANEALVSAALELLEGEGXXXXXXXXXXXXXXXGTLR------VVQNESGKLVWIVRVPPHTDARVPFEYSIEWPADKNIE 873
BLAST of mRNA_L-elsbetiae_contig19210.5678.1 vs. uniprot
Match: A0A139AUS0_GONPJ (DUF4139 domain-containing protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AUS0_GONPJ) HSP 1 Score: 108 bits (270), Expect = 1.060e-23 Identity = 68/235 (28.94%), Postives = 122/235 (51.91%), Query Frame = 1 Query: 19 TKKLTVGVLQLSAEVTHYIVPAKESAAYLQAKATNNTDYLLLASDDVSIFFDNSFVTKTSLTSVSPGESFQTFLGIDPAVKITVAPPRKTSKKRGIFSKSNHVTHTHSTCVSNNKKVPVTCVVVDAMPRSSNDIIKVVL-KQPVPASVSESEAITDDVLVSA--ALEMFGEANNDTHAQQQXXXXXXXXTSAATHVAGVIKSPSNHLAWVGKIAPQGEISIPLEYTVEWPTGKEI 714 T K+TV ++ LS + H+ P YL+AK N+++Y LL S+F DN+FV K++L +VSP E+F+ LG+DP++++T P KT++ GI SKS + T + V N K V++D +P S ++ +KV L P P V + + +++ ++E D + + V + + +N L WV K+A + +Y++++P+G+++ Sbjct: 245 THKVTVAIIDLSPKFLHFTYPRASEYVYLKAKVKNDSEYALLPGP-ASVFLDNNFVAKSTLDNVSPQETFECSLGVDPSIRVTRRPVVKTTETSGILSKSEVLRFTQTIDVKNTKTSSAKVVLIDQVPWSGDEKLKVTLIDPPQPTQVVAGDTPGERRIINRTKSMESLAAVTRDEDIELRDG-----------EVQTRLNTDTNCLEWVVKLAAGKSSVLKFQYSIQYPSGEKV 467
BLAST of mRNA_L-elsbetiae_contig19210.5678.1 vs. uniprot
Match: A0A7S1N9K3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N9K3_9EUGL) HSP 1 Score: 108 bits (270), Expect = 1.950e-23 Identity = 78/243 (32.10%), Postives = 118/243 (48.56%), Query Frame = 1 Query: 1 LRSNGQTKKLTVGVLQLSAEVTHYIVPAKESAAYLQAKATNNTDYLLLASDDVSIFFDNSFVTKTSLTSVSPGESFQTFLGIDPAVKITVAPPRKT-SKKRGIFS-KSNHVTHTHSTCVSNNKKVPVTCVVVDAMPRSSNDIIKVVLKQPVPASVSESEAITDDVLVSAALEMFGEANNDTHAQQQXXXXXXXXTSAATHVAGVIKSPSNHLAWVGKIAPQGEISIPLEYTVEWPT--GKEIE 717 + SN + K+TV + L + H+ PA E AYLQA N+++Y LLASD VS+FFD SFVT ++L SPGE FLG+D ++K+ + K G+F K + + + T V N K VP+T +V +P+S+N I+V L QP + V ++ G +++ + Q H V +N++ + PQ +P Y V WP G+EIE Sbjct: 398 IASNDKEHKVTVAFIPLVPYLCHFTTPALEDKAYLQANTVNSSNYPLLASDRVSVFFDGSFVTTSTLRHTSPGEKIVMFLGVDTSIKVQHRLVTASHGKDGGLFKGKRSSMLFEYHTHVHNTKAVPITITIVCLLPKSNNKFIEVELLQPPASCVKTVDS--------------GTSSDMDRIENQ-------------HKRVVRNRITNNVVCTYTLEPQQSQKVPFSYQVAWPQDQGEEIE 613
BLAST of mRNA_L-elsbetiae_contig19210.5678.1 vs. uniprot
Match: A0A7S4GFX8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GFX8_9EUGL) HSP 1 Score: 106 bits (264), Expect = 1.280e-22 Identity = 75/244 (30.74%), Postives = 124/244 (50.82%), Query Frame = 1 Query: 7 SNGQTKKLTVGVLQLSAEVTHYIVPAKESAAYLQAKATNNTDYLLLASDDVSIFFDNSFVTKTSLTSVSPGESFQTFLGIDPAVKIT---VAPPRKTSKKRGIF--SKSNHVTHTHSTCVSNNKKVPVTCVVVDAMPRSSNDIIKVVLKQPVPASVSESEAITDDVLVSAALEMFGEANNDTHAQQQXXXXXXXXTSAATHVAGVIKSPSNHLAWVGKIAPQGEISIPLEYTVEWP--TGKEIE 717 S+ + K+TV ++QL+ ++ ++ PA E AYLQA A N +++ LL S V+IFFD SFVT T L SPGES FLG+D VKIT ++ +T ++ +F K + + + ++T + N K V VV +PR+S+D I V L QP S+ + T D + GE + + Q +N++ + + Q ++++P Y+++WP G E++ Sbjct: 412 SDNKEHKVTVTIIQLTPKLRYFCTPALEERAYLQANAINTSEFPLLESHRVAIFFDGSFVTTTHLKHTSPGESINVFLGVDSNVKITHRLISSKSQTGREARLFHGKKMSGMVYEYATQIYNTKPSSVDITVVCLLPRASDDKIDVQLIQPPKESLFKG---TTDAVSELGNSATGEGQLASGSVMQNKI-------------------TNNIVFSRTLKAQEKVNLPFSYSMQWPPEAGNEVQ 633 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19210.5678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig19210.5678.1 >prot_L-elsbetiae_contig19210.5678.1 ID=prot_L-elsbetiae_contig19210.5678.1|Name=mRNA_L-elsbetiae_contig19210.5678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=239bp LRSNGQTKKLTVGVLQLSAEVTHYIVPAKESAAYLQAKATNNTDYLLLASback to top mRNA from alignment at L-elsbetiae_contig19210:234..2863+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig19210.5678.1 ID=mRNA_L-elsbetiae_contig19210.5678.1|Name=mRNA_L-elsbetiae_contig19210.5678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2630bp|location=Sequence derived from alignment at L-elsbetiae_contig19210:234..2863+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig19210:234..2863+ >mRNA_L-elsbetiae_contig19210.5678.1 ID=mRNA_L-elsbetiae_contig19210.5678.1|Name=mRNA_L-elsbetiae_contig19210.5678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1434bp|location=Sequence derived from alignment at L-elsbetiae_contig19210:234..2863+ (Laminarionema elsbetiae ELsaHSoW15)back to top |