mRNA_L-elsbetiae_contig19206.5676.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19206.5676.1
Unique NamemRNA_L-elsbetiae_contig19206.5676.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19206.5676.1 vs. uniprot
Match: D8LE30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE30_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.410e-14
Identity = 125/418 (29.90%), Postives = 175/418 (41.87%), Query Frame = 3 
Query:    3 WVRSQE---DDVLKRSSRPNAAQHRPCTKPGDDGIPPTLLPPNRG------------EIQSGDADHGGPMSNQTSPLDHPLCDVS--PRQPAEGE------------PELMID---TSQKEGQADLLLSGAGHH------AESSAQDEPVRASGGVSNELAYLDARAHTLLEHCRQLLAPSSTPS-DQV-SIPSSA----------------DLEERAWTLF----------TYYKR------SDRPCVLEAPSNPLSFPNVVKASTGEDPALSS---------GG----SFGERGNTDPFQQEHGHQ---SGDGRHVDKVNLALETDKCLTLMTSLLHDGYQTGDESKHAPTLFSS----------VSARSGAEKWTDWLRDDPVLSALLRRFGEIETEIERRHSS*LKWRKPNGGL 962
            W RSQE   +      SR N  +  P T   +   PP  L   +G            + +S D ++   M +Q + L+     ++  P +PA  E            PEL+ D   T++ E  AD  +   G H      AES  QD+ + A     +EL  LD RA TLLE CRQ+LAPSST + DQV S  SSA                +LE+RAW L           TY +       S +P  L+   +      +V+   GED   ++         GG     FGER       QE G Q   S D  ++  VN+    D    +  ++    Y   + + ++P L SS          ++   G E   DW R DPVLSALLRR  E+ETE++RR +      +PNG L
Sbjct:   41 WTRSQEKFGEATEAVRSRCNDIEDLPSTHVAEIVKPPPYLESGKGKSPQPSIGSPSKQSESDDCENKRRMLDQLAVLEGSQTPLNSPPGRPAHDELPTQLSTSGSEAPELVNDRLATAEVEA-ADTNVDETGVHVSIGLDAESLVQDKSINACDRGGDELETLDVRARTLLEECRQVLAPSSTITLDQVRSFTSSASQSNGPIIAALDNLPEELEKRAWMLLNNCEEPPLLPTYNEEVLAVPCSSKPPALDTQGD------LVRL--GEDDGKTAKVLLRRNPPGGVVARPFGEREGAYHLDQERGWQPTCSSDVGNLGDVNV----DSIGRVFPTITDSRYSNNERTWYSPALDSSGVQERMSSMTLATTPGEE---DWFRRDPVLSALLRRHDEVETELKRRRAL-----EPNGDL 437
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BLAST of mRNA_L-elsbetiae_contig19206.5676.1 vs. uniprot
Match: A0A6H5J9P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9P1_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 4.560e-12
Identity = 118/404 (29.21%), Postives = 173/404 (42.82%), Query Frame = 3 
Query:    6 VRSQEDDVLKRSSRPNA--AQHRPCTKPGDDGIPPTLL--PPNRGEIQSGDADHGGPMSNQTSPLD--HPLCDVSPRQPAEGE------------PELMID---TSQKE---------GQADLLLSGAGHHAESSAQDEPVRASGGVSNELAYLDARAHTLLEHCRQLLAPSSTPS-DQV-SIPSSA----------------DLEERAWTLFTYYKR----------------SDRPCVLEAPSNPLSFPN----VVKASTGEDPALSSGGS----FGERGNTDPFQQEHGHQS---GDGRHVDKVNLALETDKCLTLMTSLLHDGYQTGDESKHAPTLFSS----------VSARSGAEKWTDWLRDDPVLSALLRRFGEIETEIERRHSS*LKWRKPNGGL 962
            VRS+ +D+  RSS   A  A+  P  + G+   P   +  PP + E  S D ++  P  +Q + L+   P  +  P + A  E            PEL+ D   T++ E         G  D++    G HAE+   ++ + A  G  +EL  LDARA TLL+ CRQ+LAPSST + D+V S   SA                +LE+RAW L  + +                 S +P  ++A  + +          K     +P    GG+     GER       Q  G QS    D R++  VN+      C T+  S     +   + + ++P L SS          V+   G E   DW R DPVLSALLRR  E+E E++RR +      +PNG L
Sbjct:   55 VRSRCNDIEDRSSTHVAENAKPLPFLESGEGKSPQPSIGSPPKQSE--SDDCENERPTLDQIAVLEGSQPPLNSPPGRRAHDELPTQLSKRGSEAPELVNDRLATAEAEAADTNVHETGVHDMVP--VGLHAENLVLNKSINARDGGGDELQTLDARARTLLQECRQVLAPSSTITLDEVASFTYSASQSNGPIIAALDDLPEELEKRAWMLLNHCEEPPLLPAYNEEVLAVPCSSKPPAIDAQGDLVRLGKYDGKTAKVLLRRNPP---GGAVARPLGEREGAYHLDQGRGCQSRCSSDVRNLRDVNIDSIGRVCSTIAESR----HSNRERTWYSPALDSSGVQERMSSMTVATTPGEE---DWFRQDPVLSALLRRHDEVEAELKRRRAL-----EPNGNL 439
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19206.5676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE30_ECTSI1.410e-1429.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9P1_9PHAE4.560e-1229.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19206contigL-elsbetiae_contig19206:469..2350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1488
Cds size768
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19206.5676.1prot_L-elsbetiae_contig19206.5676.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19206 1025..2186 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815797.6728146-UTR-L-elsbetiae_contig19206:468..10241622815797.6728146-UTR-L-elsbetiae_contig19206:468..1024Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19206 469..1024 -
1691683109.3768418-UTR-L-elsbetiae_contig19206:468..10241691683109.3768418-UTR-L-elsbetiae_contig19206:468..1024Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19206 469..1024 -
1622815797.7142618-UTR-L-elsbetiae_contig19206:2186..23501622815797.7142618-UTR-L-elsbetiae_contig19206:2186..2350Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19206 2187..2350 -
1691683109.4141126-UTR-L-elsbetiae_contig19206:2186..23501691683109.4141126-UTR-L-elsbetiae_contig19206:2186..2350Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19206 2187..2350 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815797.68706-CDS-L-elsbetiae_contig19206:1024..15071622815797.68706-CDS-L-elsbetiae_contig19206:1024..1507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19206 1025..1507 -
1691683109.3880413-CDS-L-elsbetiae_contig19206:1024..15071691683109.3880413-CDS-L-elsbetiae_contig19206:1024..1507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19206 1025..1507 -
1622815797.6995418-CDS-L-elsbetiae_contig19206:1901..21861622815797.6995418-CDS-L-elsbetiae_contig19206:1901..2186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19206 1902..2186 -
1691683109.3964512-CDS-L-elsbetiae_contig19206:1901..21861691683109.3964512-CDS-L-elsbetiae_contig19206:1901..2186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19206 1902..2186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19206.5676.1

>prot_L-elsbetiae_contig19206.5676.1 ID=prot_L-elsbetiae_contig19206.5676.1|Name=mRNA_L-elsbetiae_contig19206.5676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=256bp
MSNQTSPLDHPLCDVSPRQPAEGEPELMIDTSQKEGQADLLLSGAGHHAE
SSAQDEPVRASGGVSNELAYLDARAHTLLEHCRQLLAPSSTPSDQVSIPS
SADLEERAWTLFTYYKRSDRPCVLEAPSNPLSFPNVVKASTGEDPALSSG
GSFGERGNTDPFQQEHGHQSGDGRHVDKVNLALETDKCLTLMTSLLHDGY
QTGDESKHAPTLFSSVSARSGAEKWTDWLRDDPVLSALLRRFGEIETEIE
RRHSS*
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mRNA from alignment at L-elsbetiae_contig19206:469..2350-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19206.5676.1 ID=mRNA_L-elsbetiae_contig19206.5676.1|Name=mRNA_L-elsbetiae_contig19206.5676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1882bp|location=Sequence derived from alignment at L-elsbetiae_contig19206:469..2350- (Laminarionema elsbetiae ELsaHSoW15)
GGTGGGTTCGATCTCAGGAGGATGATGTATTGAAGAGGAGTTCAAGACCA
AACGCCGCCCAGCACCGCCCATGCACCAAACCCGGAGATGACGGGATACC
CCCTACTTTGCTGCCACCAAATCGAGGCGAGATTCAATCTGGTGACGCAG
ACCACGGAGGGCCCATGTCAAATCAGACTTCGCCTTTGGATCATCCTCTG
TGTGATGTGTCGCCCCGACAACCAGCTGAGGGCGAACCCGAGCTCATGAT
TGACACGTCCCAAAAGGAAGGCCAGGCTGATCTGCTCCTTTCAGGAGCTG
GTCATCACGCTGAAAGCTCCGCGCAGGATGAACCCGTCCGTGCATCTGGA
GGAGTAAGCAACGAGCTCGCGTACCTGGATGCTCGCGCCCACACATTACT
TGAACACTGCAGACAGCTGCTTGCGCCATCATCTACTCCATCAGATCAGG
TCCGTCGGAATGTTCTTATTTTCTTTGCTGCTCGTGTACGTTGAGTGCAG
CATCGCACACCTCTAGAGTATGTCTTTGTCTGATGTAGCCGATTGCTTCT
TCAGGTCTCAGAAAGCTCGGTTTCCATTTTGCGCCAAGTCTAAGTTTTCA
GCACCCAATATGGGAATGAAGCATGATCGAAGTAGGTCCTACTAGAAGCA
GTAGCTACATAATATGTAGATTCCTAACAGAGTGCGGTATCTCGCGCAAC
ACACCACCATAGCGCGTTGTCACCAAGATGAGGGTGCCAGTCGCCTGGAG
ATGTTTCCTTTTCAATGTGTGCTTTTGCTTGCATTCGGCCATTCTCGGGC
GCGGGACAAGAGCTGATCGGATACGTTGTGCTGCTGCGTGCAGGTGTCGA
TACCCTCTTCTGCTGATTTAGAGGAGCGTGCGTGGACGTTGTTTACTTAC
TACAAGCGTAGTGACCGACCTTGCGTTCTAGAAGCACCGAGCAACCCCCT
CTCCTTCCCGAATGTTGTAAAGGCCTCCACTGGGGAAGACCCTGCACTCT
CTTCTGGTGGGTCCTTCGGCGAGAGGGGAAACACAGACCCTTTCCAGCAA
GAACATGGCCATCAATCAGGGGATGGCCGACATGTTGACAAGGTGAACCT
TGCCCTAGAAACGGACAAGTGCTTAACGCTCATGACCTCTCTCCTTCATG
ATGGCTATCAAACCGGCGATGAGAGCAAGCATGCTCCCACGTTGTTCAGC
TCAGTATCGGCCCGTAGTGGTGCTGAAAAATGGACGGACTGGCTACGCGA
TGACCCCGTACTCTCAGCATTGCTCCGCCGTTTTGGCGAAATTGAGACGG
AGATTGAGAGACGGCATTCTTCGTGATTGAAATGGCGCAAACCGAACGGT
GGTCTGCAGAAGTGAAGACCCGCAAGAAAAGGGGATTGAAAGACGACACC
TCGCTTTGCCTCGATATCTGAAAGCCAGCAGGCTGAGCCTGATACATAAG
TGATTTGCCAGGAGCGGGTCGATACGGCGATTCTGATTCTATATACATAA
CGTAGGTGACACAAGATACCACACCCCCCTGGACCGGATTTTAGAGCGCC
ATTTCTCCCGAACGAAGAAGATGCTAACACCAAACGACACATTTTCGGAC
AACCCTCGACTAGATCTTTGGAAGGCCATCCCCTTTCTGCACTGGCACTC
TGCTTGTTGAGGAGGAATCGAGCTTTGAAAATCCGTCCAGCAGGGGGTTT
GGTATCTTGTGTCACCTACGGTACATAAAGTGCGTAGCTCGCAAATATGA
CGAAACTTGAAGCGACCAAACCTACGCATGTCGCGCCCAAATTCCAATGT
TACCACAGACCGTTTCGAATCGAACCTCTTCGGAACGTTCCAGCATGCTC
ATCCAAACACCACGAACGGAGATTGTTTTGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19206:469..2350-

>mRNA_L-elsbetiae_contig19206.5676.1 ID=mRNA_L-elsbetiae_contig19206.5676.1|Name=mRNA_L-elsbetiae_contig19206.5676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1536bp|location=Sequence derived from alignment at L-elsbetiae_contig19206:469..2350- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAAATCAGACTTCGCCTTTGGATCATCCTCTGTGTGATGTGTCGCC
CCGACAACCAGCTGAGGGCGAACCCGAGCTCATGATTGACACGTCCCAAA
AGGAAGGCCAGGCTGATCTGCTCCTTTCAGGAGCTGGTCATCACGCTGAA
AGCTCCGCGCAGGATGAACCCGTCCGTGCATCTGGAGGAGTAAGCAACGA
GCTCGCGTACCTGGATGCTCGCGCCCACACATTACTTGAACACTGCAGAC
AGCTGCTTGCGCCATCATCTACTCCATCAGATCAGATGTCAAATCAGACT
TCGCCTTTGGATCATCCTCTGTGTGATGTGTCGCCCCGACAACCAGCTGA
GGGCGAACCCGAGCTCATGATTGACACGTCCCAAAAGGAAGGCCAGGCTG
ATCTGCTCCTTTCAGGAGCTGGTCATCACGCTGAAAGCTCCGCGCAGGAT
GAACCCGTCCGTGCATCTGGAGGAGTAAGCAACGAGCTCGCGTACCTGGA
TGCTCGCGCCCACACATTACTTGAACACTGCAGACAGCTGCTTGCGCCAT
CATCTACTCCATCAGATCAGGTGTCGATACCCTCTTCTGCTGATTTAGAG
GAGCGTGCGTGGACGTTGTTTACTTACTACAAGCGTAGTGACCGACCTTG
CGTTCTAGAAGCACCGAGCAACCCCCTCTCCTTCCCGAATGTTGTAAAGG
CCTCCACTGGGGAAGACCCTGCACTCTCTTCTGGTGGGTCCTTCGGCGAG
AGGGGAAACACAGACCCTTTCCAGCAAGAACATGGCCATCAATCAGGGGA
TGGCCGACATGTTGACAAGGTGAACCTTGCCCTAGAAACGGACAAGTGCT
TAACGCTCATGACCTCTCTCCTTCATGATGGCTATCAAACCGGCGATGAG
AGCAAGCATGCTCCCACGTTGTTCAGCTCAGTATCGGCCCGTAGTGGTGC
TGAAAAATGGACGGACTGGCTACGCGATGACCCCGTACTCTCAGCATTGC
TCCGCCGTTTTGGCGAAATTGAGACGGAGATTGAGAGACGGCATTCTTCG
TGAGTGTCGATACCCTCTTCTGCTGATTTAGAGGAGCGTGCGTGGACGTT
GTTTACTTACTACAAGCGTAGTGACCGACCTTGCGTTCTAGAAGCACCGA
GCAACCCCCTCTCCTTCCCGAATGTTGTAAAGGCCTCCACTGGGGAAGAC
CCTGCACTCTCTTCTGGTGGGTCCTTCGGCGAGAGGGGAAACACAGACCC
TTTCCAGCAAGAACATGGCCATCAATCAGGGGATGGCCGACATGTTGACA
AGGTGAACCTTGCCCTAGAAACGGACAAGTGCTTAACGCTCATGACCTCT
CTCCTTCATGATGGCTATCAAACCGGCGATGAGAGCAAGCATGCTCCCAC
GTTGTTCAGCTCAGTATCGGCCCGTAGTGGTGCTGAAAAATGGACGGACT
GGCTACGCGATGACCCCGTACTCTCAGCATTGCTCCGCCGTTTTGGCGAA
ATTGAGACGGAGATTGAGAGACGGCATTCTTCGTGA
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