mRNA_L-elsbetiae_contig1920.5675.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1920.5675.1
Unique NamemRNA_L-elsbetiae_contig1920.5675.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1920.5675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1920contigL-elsbetiae_contig1920:16757..17553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size797
Cds size756
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815797.624981-CDS-L-elsbetiae_contig1920:16756..175121622815797.624981-CDS-L-elsbetiae_contig1920:16756..17512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1920 16757..17512 +
1691683109.3465707-CDS-L-elsbetiae_contig1920:16756..175121691683109.3465707-CDS-L-elsbetiae_contig1920:16756..17512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1920 16757..17512 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815797.635376-UTR-L-elsbetiae_contig1920:17512..175531622815797.635376-UTR-L-elsbetiae_contig1920:17512..17553Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1920 17513..17553 +
1691683109.3624885-UTR-L-elsbetiae_contig1920:17512..175531691683109.3624885-UTR-L-elsbetiae_contig1920:17512..17553Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1920 17513..17553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1920.5675.1prot_L-elsbetiae_contig1920.5675.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1920 16757..17512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1920.5675.1

>prot_L-elsbetiae_contig1920.5675.1 ID=prot_L-elsbetiae_contig1920.5675.1|Name=mRNA_L-elsbetiae_contig1920.5675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=252bp
SFETPVEAVSWPASLESLKFGRGFNGNVSRVSWPPFLRHLSFGFGFDQPI
ARVVWPVHLQRLSFQGRFNQPISGVVWPASLQQLSFRGNFNQPITGVAWP
ASLRKLSFAGYFNQPIAGVVWPAHLEQLTLVCSFNQPVAEVLWPTSLQQL
TFGFDFNQSIAEVSWPASLQQLTFGSELDQPITGVVWPASLRQLSFGKEF
NQSIAGAVLPISLEKLCFGDALFGSAFNQPLDGVMWPASLRTVTCGSTRL
L*
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mRNA from alignment at L-elsbetiae_contig1920:16757..17553+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1920.5675.1 ID=mRNA_L-elsbetiae_contig1920.5675.1|Name=mRNA_L-elsbetiae_contig1920.5675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=797bp|location=Sequence derived from alignment at L-elsbetiae_contig1920:16757..17553+ (Laminarionema elsbetiae ELsaHSoW15)
TCCTTCGAGACGCCCGTGGAAGCGGTGTCGTGGCCGGCCTCGCTCGAGAG
CTTGAAGTTCGGGAGGGGTTTCAACGGCAACGTTTCTAGGGTTTCTTGGC
CGCCGTTTTTGCGACACTTGTCGTTCGGGTTTGGCTTCGACCAGCCTATC
GCCAGGGTCGTGTGGCCGGTCCACCTTCAGCGGTTATCATTCCAGGGTCG
CTTCAACCAGCCCATCTCCGGAGTCGTGTGGCCGGCCTCGCTGCAGCAGC
TATCGTTCCGGGGAAACTTCAACCAGCCCATCACCGGGGTCGCGTGGCCG
GCGTCGCTACGAAAGCTATCCTTCGCGGGTTATTTTAACCAGCCCATCGC
CGGAGTTGTGTGGCCGGCCCACCTTGAACAGCTCACGCTGGTGTGTAGCT
TCAACCAACCCGTCGCAGAAGTGCTGTGGCCGACCTCTCTGCAGCAACTG
ACGTTCGGGTTCGACTTCAACCAGTCCATCGCCGAGGTGTCGTGGCCAGC
CTCCCTACAGCAGCTCACGTTCGGTTCAGAGCTGGACCAGCCGATCACCG
GCGTTGTTTGGCCCGCATCGCTGAGACAGCTATCGTTCGGCAAGGAGTTC
AACCAGAGCATCGCCGGAGCTGTGTTGCCGATTTCTTTGGAGAAGCTCTG
CTTCGGAGATGCTTTATTCGGGTCAGCTTTCAACCAGCCCCTCGACGGAG
TTATGTGGCCAGCTTCTCTGCGGACTGTGACCTGCGGATCAACGCGTTTG
CTTTGAATCGTTTGGGCCGTGCCCTCGATGAGCGTAGGCCCCGTGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1920:16757..17553+

>mRNA_L-elsbetiae_contig1920.5675.1 ID=mRNA_L-elsbetiae_contig1920.5675.1|Name=mRNA_L-elsbetiae_contig1920.5675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1512bp|location=Sequence derived from alignment at L-elsbetiae_contig1920:16757..17553+ (Laminarionema elsbetiae ELsaHSoW15)
TCCTTCGAGACGCCCGTGGAAGCGGTGTCGTGGCCGGCCTCGCTCGAGAG
CTTGAAGTTCGGGAGGGGTTTCAACGGCAACGTTTCTAGGGTTTCTTGGC
CGCCGTTTTTGCGACACTTGTCGTTCGGGTTTGGCTTCGACCAGCCTATC
GCCAGGGTCGTGTGGCCGGTCCACCTTCAGCGGTTATCATTCCAGGGTCG
CTTCAACCAGCCCATCTCCGGAGTCGTGTGGCCGGCCTCGCTGCAGCAGC
TATCGTTCCGGGGAAACTTCAACCAGCCCATCACCGGGGTCGCGTGGCCG
GCGTCGCTACGAAAGCTATCCTTCGCGGGTTATTTTAACCAGCCCATCGC
CGGAGTTGTGTGGCCGGCCCACCTTGAACAGCTCACGCTGGTGTGTAGCT
TCAACCAACCCGTCGCAGAAGTGCTGTGGCCGACCTCTCTGCAGCAACTG
ACGTTCGGGTTCGACTTCAACCAGTCCATCGCCGAGGTGTCGTGGCCAGC
CTCCCTACAGCAGCTCACGTTCGGTTCAGAGCTGGACCAGCCGATCACCG
GCGTTGTTTGGCCCGCATCGCTGAGACAGCTATCGTTCGGCAAGGAGTTC
AACCAGAGCATCGCCGGAGCTGTGTTGCCGATTTCTTTGGAGAAGCTCTG
CTTCGGAGATGCTTTATTCGGGTCAGCTTTCAACCAGCCCCTCGACGGAG
TTATGTGGCCAGCTTCTCTGCGGACTGTGACCTGCGGATCAACGCGTTTG
CTTTGATCCTTCGAGACGCCCGTGGAAGCGGTGTCGTGGCCGGCCTCGCT
CGAGAGCTTGAAGTTCGGGAGGGGTTTCAACGGCAACGTTTCTAGGGTTT
CTTGGCCGCCGTTTTTGCGACACTTGTCGTTCGGGTTTGGCTTCGACCAG
CCTATCGCCAGGGTCGTGTGGCCGGTCCACCTTCAGCGGTTATCATTCCA
GGGTCGCTTCAACCAGCCCATCTCCGGAGTCGTGTGGCCGGCCTCGCTGC
AGCAGCTATCGTTCCGGGGAAACTTCAACCAGCCCATCACCGGGGTCGCG
TGGCCGGCGTCGCTACGAAAGCTATCCTTCGCGGGTTATTTTAACCAGCC
CATCGCCGGAGTTGTGTGGCCGGCCCACCTTGAACAGCTCACGCTGGTGT
GTAGCTTCAACCAACCCGTCGCAGAAGTGCTGTGGCCGACCTCTCTGCAG
CAACTGACGTTCGGGTTCGACTTCAACCAGTCCATCGCCGAGGTGTCGTG
GCCAGCCTCCCTACAGCAGCTCACGTTCGGTTCAGAGCTGGACCAGCCGA
TCACCGGCGTTGTTTGGCCCGCATCGCTGAGACAGCTATCGTTCGGCAAG
GAGTTCAACCAGAGCATCGCCGGAGCTGTGTTGCCGATTTCTTTGGAGAA
GCTCTGCTTCGGAGATGCTTTATTCGGGTCAGCTTTCAACCAGCCCCTCG
ACGGAGTTATGTGGCCAGCTTCTCTGCGGACTGTGACCTGCGGATCAACG
CGTTTGCTTTGA
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