mRNA_L-elsbetiae_contig192.5670.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig192.5670.1
Unique NamemRNA_L-elsbetiae_contig192.5670.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig192.5670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig192contigL-elsbetiae_contig192:10797..11660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size275
Cds size273
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig192.5670.1prot_L-elsbetiae_contig192.5670.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig192 10797..11660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.9450305-CDS-L-elsbetiae_contig192:10796..108771622815796.9450305-CDS-L-elsbetiae_contig192:10796..10877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig192 10797..10877 +
1691683108.865862-CDS-L-elsbetiae_contig192:10796..108771691683108.865862-CDS-L-elsbetiae_contig192:10796..10877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig192 10797..10877 +
1622815796.9551315-CDS-L-elsbetiae_contig192:11156..112091622815796.9551315-CDS-L-elsbetiae_contig192:11156..11209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig192 11157..11209 +
1691683108.879484-CDS-L-elsbetiae_contig192:11156..112091691683108.879484-CDS-L-elsbetiae_contig192:11156..11209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig192 11157..11209 +
1622815796.9662588-CDS-L-elsbetiae_contig192:11521..116601622815796.9662588-CDS-L-elsbetiae_contig192:11521..11660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig192 11522..11660 +
1691683108.89041-CDS-L-elsbetiae_contig192:11521..116601691683108.89041-CDS-L-elsbetiae_contig192:11521..11660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig192 11522..11660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig192.5670.1

>prot_L-elsbetiae_contig192.5670.1 ID=prot_L-elsbetiae_contig192.5670.1|Name=mRNA_L-elsbetiae_contig192.5670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
EFRRTFNTKFFWACPGRDTQERCTSEEGHGQYHNAAENTSTGSKRICLGT
SGHVMARIGHVPYHGTDTALRPTGPPIRDEREVATRERAL*
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mRNA from alignment at L-elsbetiae_contig192:10797..11660+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig192.5670.1 ID=mRNA_L-elsbetiae_contig192.5670.1|Name=mRNA_L-elsbetiae_contig192.5670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig192:10797..11660+ (Laminarionema elsbetiae ELsaHSoW15)
GAGTTCCGCCGCACTTTCAACACGAAGTTCTTTTGGGCCTGCCCAGGCAG
AGATACGCAAGAGAGGTGCACGAGTGAAGAGGTAAGGGGGTAGAGGGATA
GACTGCGCATACGTGGGCCGCAGAGAGAGGCTGATGTATGCCCGATTTGA
GTCACGGACCACGAGCGAGTTCGTTTGGATTGCAGAACCTCTTCGTCCCC
TTCCCCTCTTGGCCACCTTCGCCCGATGCAACAACCCAACACACACCAAC
TCACGCCAACCCACGCCAACAACTCCCCCGGCATCTTTACCCTGTTGATT
GGATCACCTCAACCGCGTGCTGTCCTCGCGCACGCGCTTCTCATCTCGTG
GGACACGGAGGGGCATGGACAATACCACAACGCCGCCGAGAATACCAGCA
CCGGCAGCAAACGGTGAGGATAGCAGAGAGTAGATGGGGCGGGCGGGCGA
GCGAGGCACCGACGGAGAGCGAGTGTGGGAGAGGTGGTTTGGTTGTGATA
TATTTTTAAGGTTTTGAAGCTAAATGGTAAAAGTGAGCAAACGGGACAGA
GAGAGAGAGAGAGAGAGGAGACGCACCTATCGCGGACATTGTGACACATG
CCAGTGGCGTGCGGGTACTCGACACTATCCCAACACTACCGCCGATATTC
CACCGCAACGTGTCGCTATAGCAATAGATTTGATTCAACATTCAGCGAAT
TTGCTCGTCTATCTGTTTGTATCAGAATCTGCTTGGGTACATCAGGGCAC
GTAATGGCGCGTATCGGCCACGTACCCTACCACGGCACAGACACAGCACT
GCGACCTACTGGACCGCCCATCCGGGACGAACGTGAAGTGGCGACCAGGG
AACGAGCTCTGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig192:10797..11660+

>mRNA_L-elsbetiae_contig192.5670.1 ID=mRNA_L-elsbetiae_contig192.5670.1|Name=mRNA_L-elsbetiae_contig192.5670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig192:10797..11660+ (Laminarionema elsbetiae ELsaHSoW15)
GAGTTCCGCCGCACTTTCAACACGAAGTTCTTTTGGGCCTGCCCAGGCAG
AGATACGCAAGAGAGGTGCACGAGTGAAGAGGAGTTCCGCCGCACTTTCA
ACACGAAGTTCTTTTGGGCCTGCCCAGGCAGAGATACGCAAGAGAGGTGC
ACGAGTGAAGAGGGGCATGGACAATACCACAACGCCGCCGAGAATACCAG
CACCGGCAGCAAACGGGGCATGGACAATACCACAACGCCGCCGAGAATAC
CAGCACCGGCAGCAAACGAATCTGCTTGGGTACATCAGGGCACGTAATGG
CGCGTATCGGCCACGTACCCTACCACGGCACAGACACAGCACTGCGACCT
ACTGGACCGCCCATCCGGGACGAACGTGAAGTGGCGACCAGGGAACGAGC
TCTGTAGAATCTGCTTGGGTACATCAGGGCACGTAATGGCGCGTATCGGC
CACGTACCCTACCACGGCACAGACACAGCACTGCGACCTACTGGACCGCC
CATCCGGGACGAACGTGAAGTGGCGACCAGGGAACGAGCTCTGTAG
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