mRNA_L-elsbetiae_contig19195.5668.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19195.5668.1
Unique NamemRNA_L-elsbetiae_contig19195.5668.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19195.5668.1 vs. uniprot
Match: A0A6H5JXU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU8_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 3.860e-5
Identity = 38/131 (29.01%), Postives = 64/131 (48.85%), Query Frame = 3 
Query:   69 YGSFKSSAPLATREDMEHRM---EAMMIGAGYSSVLAVHTHVVTEGLRGCDQDLLIELV--STEFTTKPVKMTVRISQGNTCVGPGGSRTFMSDKLTHCMHNIEYSFVDGEVTTVSRVLIPGRVPLSFAFP 446
            YG +  S+P     D+   +      + G G  +   VH  VV  GLRGCD+  ++++V  + +    P+ + +R     T   PG     +S+      H     F+DG +TTV+++ I GR+PL +A+P
Sbjct:   10 YGDWPGSSPPERNTDLRDLLLWQHVFLAGLGMKT--HVHVAVVEAGLRGCDETCMMDVVFGTPKKEGDPLPILLRWEFCPTQNTPG----VVSEPTLAVWHETAPCFLDGVMTTVTKIAIRGRIPLEWAWP 134
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19195.5668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JXU8_9PHAE3.860e-529.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19195contigL-elsbetiae_contig19195:548..2550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1249
Cds size735
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19195.5668.1prot_L-elsbetiae_contig19195.5668.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19195 553..2041 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.858396-UTR-L-elsbetiae_contig19195:547..5521622815796.858396-UTR-L-elsbetiae_contig19195:547..552Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19195 548..552 +
1691683108.8194826-UTR-L-elsbetiae_contig19195:547..5521691683108.8194826-UTR-L-elsbetiae_contig19195:547..552Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19195 548..552 +
1622815796.9040527-UTR-L-elsbetiae_contig19195:2041..25501622815796.9040527-UTR-L-elsbetiae_contig19195:2041..2550Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19195 2042..2550 +
1691683108.8572943-UTR-L-elsbetiae_contig19195:2041..25501691683108.8572943-UTR-L-elsbetiae_contig19195:2041..2550Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19195 2042..2550 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.86931-CDS-L-elsbetiae_contig19195:552..5941622815796.86931-CDS-L-elsbetiae_contig19195:552..594Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19195 553..594 +
1691683108.8295252-CDS-L-elsbetiae_contig19195:552..5941691683108.8295252-CDS-L-elsbetiae_contig19195:552..594Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19195 553..594 +
1622815796.8791382-CDS-L-elsbetiae_contig19195:892..14191622815796.8791382-CDS-L-elsbetiae_contig19195:892..1419Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19195 893..1419 +
1691683108.839092-CDS-L-elsbetiae_contig19195:892..14191691683108.839092-CDS-L-elsbetiae_contig19195:892..1419Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19195 893..1419 +
1622815796.8912134-CDS-L-elsbetiae_contig19195:1875..20411622815796.8912134-CDS-L-elsbetiae_contig19195:1875..2041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19195 1876..2041 +
1691683108.8487225-CDS-L-elsbetiae_contig19195:1875..20411691683108.8487225-CDS-L-elsbetiae_contig19195:1875..2041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19195 1876..2041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19195.5668.1

>prot_L-elsbetiae_contig19195.5668.1 ID=prot_L-elsbetiae_contig19195.5668.1|Name=mRNA_L-elsbetiae_contig19195.5668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=245bp
MAMGRRQVGDGAENVGVQNKVYGSFKSSAPLATREDMEHRMEAMMIGAGY
SSVLAVHTHVVTEGLRGCDQDLLIELVSTEFTTKPVKMTVRISQGNTCVG
PGGSRTFMSDKLTHCMHNIEYSFVDGEVTTVSRVLIPGRVPLSFAFPLLA
GSPSMGVDASASGDSPSASASFIRLVRPAPRHIVLRAIHRYSRKGHIAMT
DEPDQVKSAIYSNDVELRRRMWLKYAETFNRPTAKEFKNWFLDL*
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mRNA from alignment at L-elsbetiae_contig19195:548..2550+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19195.5668.1 ID=mRNA_L-elsbetiae_contig19195.5668.1|Name=mRNA_L-elsbetiae_contig19195.5668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2003bp|location=Sequence derived from alignment at L-elsbetiae_contig19195:548..2550+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTGATGGCCATGGGGCGTCGCCAGGTTGGAGACGGCGCCGAAAATGTG
AGTGGGGGTCGAGCAACAAAGCTACTTAGTCAGAATGAAATCGGGATTTG
GTGTCGTGGCTGCTGCTACTACTAGTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGTATGTGGTGTTGTAGTGCTGTTCGTTGT
CATTTATTTGCTGTCCCATTTGTGTGCATGAAAATCGAAAAGGTTGTTAG
CAAAACAGGCGCTGAAGCGTAACTTGACCACATACCCGTGTGCATGCATA
CTACATAGCAATGGTGATAGTGAAACGTCGCTTCCACACCGGCAGGTTGG
CGTCCAGAACAAGGTTTACGGCTCGTTTAAGTCCAGCGCTCCTCTGGCCA
CACGGGAGGACATGGAGCATCGCATGGAAGCAATGATGATTGGTGCAGGG
TATTCAAGTGTGCTTGCGGTGCACACGCACGTGGTTACTGAAGGGCTCAG
GGGTTGTGACCAGGATTTGTTGATTGAGTTGGTGTCAACCGAGTTCACGA
CAAAGCCAGTTAAGATGACAGTTCGGATCTCTCAGGGGAATACCTGCGTT
GGGCCGGGTGGGTCACGAACATTTATGTCAGACAAGCTCACACATTGTAT
GCACAATATTGAGTATTCGTTCGTGGACGGAGAGGTCACGACAGTATCGA
GGGTGTTGATTCCTGGACGTGTTCCTCTGTCTTTCGCCTTTCCCCTATTA
GCGGGGTCGCCGTCTATGGGTGTTGATGCATCAGCATCGGGGGACTCGCC
TTCGGCTTCGGCTTCCTTCATTCGTCTAGTTCGTCCGGCGCCAAGGCACA
TCGTACTTCGGGCAATCCATAGGTGCCGTGCATGCAGCGTTTGTTTGTTG
ATGTAGCATATACTCCTATTATTTTGAGTGCTTGCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCGCTCGACGGTTCCGCTTCTTCAGCGNNNNNNNNNNG
GGCAATCCATAGGTGGCGGGGATGCCGCGTTTTTTTTTTTGTGTTCCATT
TACTCCTTTTTTTTTGTGTGCCTTCCCCCCCCCCCCCCCCCCTCGACGTA
CGTATCTGAGCTTAGTTAGCTCGGGCGCCTGATAGATGTAACAAGTTAAA
ATGTTTTTCCGTTCCGGCTTTCACTGCTTTTTGGGGGCGGAAACTACCAT
ACATAGATGATCTGCGGGCGGATGATGGGAACGTAAATGCTCAGGAGAAA
CAAGATTAGCACGAATATACATATGTAGCTGTTGGTCAACGTGCACGTGC
ATCCCCGACCCGTCCTCTGCCCCACCAGGTACTCGAGGAAGGGACACATC
GCCATGACCGACGAGCCGGATCAAGTGAAGTCGGCCATATACTCGAATGA
CGTAGAACTTCGGCGCCGCATGTGGCTGAAGTACGCCGAGACCTTTAACC
GCCCGACGGCAAAGGAGTTTAAGAATTGGTTCCTGGACCTATAAGACGAA
GAGTATATCAGCCGTGCTAGGCCTACGTGCAGGGAGGGTATCTTTCCTGG
CCCGTTTCGGTGCAGTTATTTCCGGTGTCTTGTCTCGTTGGGCTTGGGAG
ATTTTTTTTCGAGGAAGAAATAAATTCTGTCGGAAGCGATGTGGTAGTCT
GTGCCAGCAGTAGTGAGTGTTCGTCTCTCTCTCCCGCCCGCCCATCCTTC
GCTGTTCTTTCTCTCGTACAGCCGTAGCTGTATAGCTGTATGTGCAGCTT
CGTAAGTATGTATGACCGTTCGCTTCGTAGGAAGTGTGGGGGCGGTACGG
GTCGACGGTTTGGCGCCCGGGCGCGGAGGAATTGAGCAAATGGTACCTAG
AGCTGTAGTCCGTTGGATGCGTGTGGGGGAGATCAGGAGGAGAATTCAAC
CGGAGCGAGGTTGTTGTCTGTTTGCTTGTTCCATGCTTTTTTTTTTTCGG
ACAGTTGTTTTTCCGGGTGATGTCCTTGCGCGATTTGAGGCTATTTTGAT
GTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19195:548..2550+

>mRNA_L-elsbetiae_contig19195.5668.1 ID=mRNA_L-elsbetiae_contig19195.5668.1|Name=mRNA_L-elsbetiae_contig19195.5668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1470bp|location=Sequence derived from alignment at L-elsbetiae_contig19195:548..2550+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCATGGGGCGTCGCCAGGTTGGAGACGGCGCCGAAAATATGGCCAT
GGGGCGTCGCCAGGTTGGAGACGGCGCCGAAAATGTTGGCGTCCAGAACA
AGGTTTACGGCTCGTTTAAGTCCAGCGCTCCTCTGGCCACACGGGAGGAC
ATGGAGCATCGCATGGAAGCAATGATGATTGGTGCAGGGTATTCAAGTGT
GCTTGCGGTGCACACGCACGTGGTTACTGAAGGGCTCAGGGGTTGTGACC
AGGATTTGTTGATTGAGTTGGTGTCAACCGAGTTCACGACAAAGCCAGTT
AAGATGACAGTTCGGATCTCTCAGGGGAATACCTGCGTTGGGCCGGGTGG
GTCACGAACATTTATGTCAGACAAGCTCACACATTGTATGCACAATATTG
AGTATTCGTTCGTGGACGGAGAGGTCACGACAGTATCGAGGGTGTTGATT
CCTGGACGTGTTCCTCTGTCTTTCGCCTTTCCCCTATTAGCGGGGTCGCC
GTCTATGGGTGTTGATGCATCAGCATCGGGGGACTCGCCTTCGGCTTCGG
CTTCCTTCATTCGTCTAGTTCGTCCGGCGCCAAGGCACATCGTACTTCGG
GCAATCCATAGGTTGGCGTCCAGAACAAGGTTTACGGCTCGTTTAAGTCC
AGCGCTCCTCTGGCCACACGGGAGGACATGGAGCATCGCATGGAAGCAAT
GATGATTGGTGCAGGGTATTCAAGTGTGCTTGCGGTGCACACGCACGTGG
TTACTGAAGGGCTCAGGGGTTGTGACCAGGATTTGTTGATTGAGTTGGTG
TCAACCGAGTTCACGACAAAGCCAGTTAAGATGACAGTTCGGATCTCTCA
GGGGAATACCTGCGTTGGGCCGGGTGGGTCACGAACATTTATGTCAGACA
AGCTCACACATTGTATGCACAATATTGAGTATTCGTTCGTGGACGGAGAG
GTCACGACAGTATCGAGGGTGTTGATTCCTGGACGTGTTCCTCTGTCTTT
CGCCTTTCCCCTATTAGCGGGGTCGCCGTCTATGGGTGTTGATGCATCAG
CATCGGGGGACTCGCCTTCGGCTTCGGCTTCCTTCATTCGTCTAGTTCGT
CCGGCGCCAAGGCACATCGTACTTCGGGCAATCCATAGGTACTCGAGGAA
GGGACACATCGCCATGACCGACGAGCCGGATCAAGTGAAGTCGGCCATAT
ACTCGAATGACGTAGAACTTCGGCGCCGCATGTGGCTGAAGTACGCCGAG
ACCTTTAACCGCCCGACGGCAAAGGAGTTTAAGAATTGGTTCCTGGACCT
ATAAGTACTCGAGGAAGGGACACATCGCCATGACCGACGAGCCGGATCAA
GTGAAGTCGGCCATATACTCGAATGACGTAGAACTTCGGCGCCGCATGTG
GCTGAAGTACGCCGAGACCTTTAACCGCCCGACGGCAAAGGAGTTTAAGA
ATTGGTTCCTGGACCTATAA
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