mRNA_L-elsbetiae_contig19159.5655.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19159.5655.1
Unique NamemRNA_L-elsbetiae_contig19159.5655.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19159.5655.1 vs. uniprot
Match: A0A6H5JME6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME6_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 3.730e-5
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = -2 
Query:  363 LFAEGVTVRRSMIKVVLVGQEGAGKTR*ACVRFLLLLG 476
            LF EGV+VRR+MIKVVLVGQEGAGKTR A  + L  LG
Sbjct:   91 LFEEGVSVRRNMIKVVLVGQEGAGKTRSAYSQALXYLG 128
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19159.5655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JME6_9PHAE3.730e-573.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19159contigL-elsbetiae_contig19159:970..1448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size481
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.732323-CDS-L-elsbetiae_contig19159:969..14461622815795.732323-CDS-L-elsbetiae_contig19159:969..1446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19159 970..1446 +
1691683108.0386493-CDS-L-elsbetiae_contig19159:969..14461691683108.0386493-CDS-L-elsbetiae_contig19159:969..1446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19159 970..1446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19159.5655.1prot_L-elsbetiae_contig19159.5655.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19159 970..1446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19159.5655.1

>prot_L-elsbetiae_contig19159.5655.1 ID=prot_L-elsbetiae_contig19159.5655.1|Name=mRNA_L-elsbetiae_contig19159.5655.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
GNKKSRKERDKVKAVSSMLGDKQKGGCISISSWQVAPFRKEGAPPPHLTA
EGQMSVICCSQNATPRTGVEFPHIFSHISSHISVYGIAANSAHHTVLQRR
HGGLLQRLTDLNDRCPRPKQTPNNNRNRTQAHLVFPAPSWPTSTTLIMLR
RTVTPSANR
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mRNA from alignment at L-elsbetiae_contig19159:970..1448+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19159.5655.1 ID=mRNA_L-elsbetiae_contig19159.5655.1|Name=mRNA_L-elsbetiae_contig19159.5655.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=479bp|location=Sequence derived from alignment at L-elsbetiae_contig19159:970..1448+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAACAAGAAGTCAAGAAAAGAAAGGGATAAGGTAAAAGCAGTTTCAAG
CATGCTTGGTGACAAACAAAAGGGTGGTTGTATCTCCATCAGTAGTTGGC
AAGTTGCTCCATTTCGAAAAGAAGGTGCACCCCCACCCCACCTCACGGCT
GAAGGCCAGATGAGCGTAATCTGTTGTTCTCAAAACGCGACACCCCGCAC
TGGGGTGGAGTTTCCCCACATATTTTCACATATTTCGAGCCATATTTCGG
TGTATGGGATCGCGGCTAACTCAGCGCACCATACAGTACTCCAGAGGCGG
CACGGCGGTCTATTGCAACGCCTTACCGACCTAAATGATAGATGTCCACG
GCCGAAACAGACCCCCAACAACAACAGAAATCGAACACAAGCTCACCTAG
TTTTTCCTGCGCCTTCTTGGCCGACAAGCACCACCTTAATCATGCTCCGT
CGAACCGTGACGCCTTCTGCAAACAGATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19159:970..1448+

>mRNA_L-elsbetiae_contig19159.5655.1 ID=mRNA_L-elsbetiae_contig19159.5655.1|Name=mRNA_L-elsbetiae_contig19159.5655.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig19159:970..1448+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAACAAGAAGTCAAGAAAAGAAAGGGATAAGGTAAAAGCAGTTTCAAG
CATGCTTGGTGACAAACAAAAGGGTGGTTGTATCTCCATCAGTAGTTGGC
AAGTTGCTCCATTTCGAAAAGAAGGTGCACCCCCACCCCACCTCACGGCT
GAAGGCCAGATGAGCGTAATCTGTTGTTCTCAAAACGCGACACCCCGCAC
TGGGGTGGAGTTTCCCCACATATTTTCACATATTTCGAGCCATATTTCGG
TGTATGGGATCGCGGCTAACTCAGCGCACCATACAGTACTCCAGAGGCGG
CACGGCGGTCTATTGCAACGCCTTACCGACCTAAATGATAGATGTCCACG
GCCGAAACAGACCCCCAACAACAACAGAAATCGAACACAAGCTCACCTAG
TTTTTCCTGCGCCTTCTTGGCCGACAAGCACCACCTTAATCATGCTCCGT
CGAACCGTGACGCCTTCTGCAAACAGAGGCAACAAGAAGTCAAGAAAAGA
AAGGGATAAGGTAAAAGCAGTTTCAAGCATGCTTGGTGACAAACAAAAGG
GTGGTTGTATCTCCATCAGTAGTTGGCAAGTTGCTCCATTTCGAAAAGAA
GGTGCACCCCCACCCCACCTCACGGCTGAAGGCCAGATGAGCGTAATCTG
TTGTTCTCAAAACGCGACACCCCGCACTGGGGTGGAGTTTCCCCACATAT
TTTCACATATTTCGAGCCATATTTCGGTGTATGGGATCGCGGCTAACTCA
GCGCACCATACAGTACTCCAGAGGCGGCACGGCGGTCTATTGCAACGCCT
TACCGACCTAAATGATAGATGTCCACGGCCGAAACAGACCCCCAACAACA
ACAGAAATCGAACACAAGCTCACCTAGTTTTTCCTGCGCCTTCTTGGCCG
ACAAGCACCACCTTAATCATGCTCCGTCGAACCGTGACGCCTTCTGCAAA
CAGA
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