Homology
BLAST of mRNA_L-elsbetiae_contig19140.5650.1 vs. uniprot
Match:
D7FLG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLG9_ECTSI)
HSP 1 Score: 169 bits (427), Expect = 2.180e-51
Identity = 80/93 (86.02%), Postives = 85/93 (91.40%), Query Frame = 1
Query: 13 QKFLKPALWLPGIRYPHNWWETWSVATAEPEVCVKDMGRAIENVAAAAASPEGIGGGQMVFQLASLRYSVEEKAGYAKMICVSKARWMDIVEL 291
QKFLKPA+WLPG+RYPHNWWETWSVATA+PEVCV+DMGRAIENVA AA S EGIG GQMVFQLASLRY EE GYAKMICVSKARW+DIVEL
Sbjct: 32 QKFLKPAMWLPGLRYPHNWWETWSVATADPEVCVRDMGRAIENVAIAAESSEGIGDGQMVFQLASLRYCAEEGVGYAKMICVSKARWLDIVEL 124
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19140.5650.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 2.18e-51 / Id = 86.02 Sequence D7FLG9_ECTSI
Match Name E-value Identity Description
D7FLG9_ECTSI 2.180e-51 86.02 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Ec32 ortholog description conserved unknown protein
Ec32 ortholog Ec-17_001230.1
Exons 1
Model size 291
Cds size 291
Stop 0
Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815795.4774754-CDS-L-elsbetiae_contig19140:736..1027 1622815795.4774754-CDS-L-elsbetiae_contig19140:736..1027 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig19140 737..1027 -
1691683107.888051-CDS-L-elsbetiae_contig19140:736..1027 1691683107.888051-CDS-L-elsbetiae_contig19140:736..1027 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig19140 737..1027 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig19140.5650.1
>prot_L-elsbetiae_contig19140.5650.1 ID=prot_L-elsbetiae_contig19140.5650.1|Name=mRNA_L-elsbetiae_contig19140.5650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
CPSPQKFLKPALWLPGIRYPHNWWETWSVATAEPEVCVKDMGRAIENVAA AAASPEGIGGGQMVFQLASLRYSVEEKAGYAKMICVSKARWMDIVEL back to top mRNA from alignment at L-elsbetiae_contig19140:737..1027-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19140.5650.1 ID=mRNA_L-elsbetiae_contig19140.5650.1|Name=mRNA_L-elsbetiae_contig19140.5650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=291bp|location=Sequence derived from alignment at L-elsbetiae_contig19140:737..1027- (Laminarionema elsbetiae ELsaHSoW15)TGCCCCTCCCCCCAGAAATTTCTCAAGCCGGCGCTGTGGCTGCCGGGCAT
CCGCTACCCCCACAACTGGTGGGAGACGTGGAGCGTCGCGACGGCGGAGC
CGGAGGTGTGCGTGAAGGACATGGGGCGCGCGATCGAGAACGTGGCGGCG
GCGGCGGCATCGCCCGAGGGGATAGGCGGCGGCCAGATGGTGTTCCAGCT
GGCCTCCCTGCGGTATTCCGTGGAGGAAAAGGCCGGCTATGCCAAGATGA
TCTGCGTCTCGAAGGCGCGGTGGATGGACATCGTGGAGCTG back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig19140:737..1027-
>mRNA_L-elsbetiae_contig19140.5650.1 ID=mRNA_L-elsbetiae_contig19140.5650.1|Name=mRNA_L-elsbetiae_contig19140.5650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig19140:737..1027- (Laminarionema elsbetiae ELsaHSoW15) TGCCCCTCCCCCCAGAAATTTCTCAAGCCGGCGCTGTGGCTGCCGGGCAT CCGCTACCCCCACAACTGGTGGGAGACGTGGAGCGTCGCGACGGCGGAGC CGGAGGTGTGCGTGAAGGACATGGGGCGCGCGATCGAGAACGTGGCGGCG GCGGCGGCATCGCCCGAGGGGATAGGCGGCGGCCAGATGGTGTTCCAGCT GGCCTCCCTGCGGTATTCCGTGGAGGAAAAGGCCGGCTATGCCAAGATGA TCTGCGTCTCGAAGGCGCGGTGGATGGACATCGTGGAGCTGTGCCCCTCC CCCCAGAAATTTCTCAAGCCGGCGCTGTGGCTGCCGGGCATCCGCTACCC CCACAACTGGTGGGAGACGTGGAGCGTCGCGACGGCGGAGCCGGAGGTGT GCGTGAAGGACATGGGGCGCGCGATCGAGAACGTGGCGGCGGCGGCGGCA TCGCCCGAGGGGATAGGCGGCGGCCAGATGGTGTTCCAGCTGGCCTCCCT GCGGTATTCCGTGGAGGAAAAGGCCGGCTATGCCAAGATGATCTGCGTCT CGAAGGCGCGGTGGATGGACATCGTGGAGCTG back to top