mRNA_L-elsbetiae_contig1914.5649.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Match: D8LGX6_ECTSI (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGX6_ECTSI) HSP 1 Score: 669 bits (1726), Expect = 4.120e-233 Identity = 359/507 (70.81%), Postives = 394/507 (77.71%), Query Frame = 1 Query: 262 FNMASVSDPVSAVAERCAAETTFQGEHRVVHIATPAPPPPWMEAEDEEDAEEQ-ATVAQLVSYFGAVSVERGEELVKFGSVYIGEVVDTSWKHPPSKEKQTTVAAARKKAAKSADQAPFRGTSFEHMKLRRLHPWEAGTLPPHGSYLRVHCDPRTFPLSESTDWSRRIVHANADYVILDKPAGVPTVPTIDNGVQNCVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARNKEAAKQLNELFRERRVKKRYLALLTPTPGPPVLIGPVAHCCRSKAFDGSRRPRIYANYDEELLAGDKWGGAWQDARSTVLLCAPATGAAAAAAVAADRAEMEAAATALEESAAGVATRLEAELAAGLGLGSGASPEEMEQATRGAVSGIEDGEEGSSENKTFDAEAAAVPGAGAEGGEDNHVPHLCAMELETGRTHQLRLQLAAMGAAIVGEKRYRGVVGRVHRGLREDDDTSGFGEEPEEIALQAARIEFEWGGSTVVYSAARPSWAL 1779 +AS S V+ +AE C+AETT+QGEHRVVHIATP PPPW+E DEE EEQ AT+A+LVS+FGAVS ERG ELVKFGSVYIGEVVDT+W+HPPSKEKQ T+AAARKKA KSADQAPFRGTSFEHM+LRRLHPWE+G PPHG+YLRVHCDPRTFP S+ DWS+RIVH N D+V++DKPAGVPTVPTIDNGVQNCVFQASLAVAG+P GSRSLPPPLHAVSRLDVCTSGIVVFAR+KEAAKQLNELFR RRVKKRYLALLTP GP V G +AHCCRSKAFDGSRRPRIYA++DEELLAGDKWGGAWQ+ARSTVLLCAPATG+A PEE+E A RG +G E + DAEA A E E +H PHLCAMELETGRTHQLRLQLAAMG+AIVG+ RYRGVVGRVHRGLR DDDTS FG+EPE IALQAARIEFEW G TVV+S RPSWAL Sbjct: 10 ITIASSSAAVTGIAEGCSAETTYQGEHRVVHIATPGAPPPWLE--DEEQGEEQRATIAELVSHFGAVSRERGVELVKFGSVYIGEVVDTNWRHPPSKEKQMTIAAARKKALKSADQAPFRGTSFEHMRLRRLHPWESGNFPPHGAYLRVHCDPRTFPASQVMDWSKRIVHKNEDFVVVDKPAGVPTVPTIDNGVQNCVFQASLAVAGMPPGSRSLPPPLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRARRVKKRYLALLTP--GPAVPTGSMAHCCRSKAFDGSRRPRIYADFDEELLAGDKWGGAWQEARSTVLLCAPATGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEEIEAAARGG-----EGREEEDGSTAPDAEATTAAEAARE--EGDHAPHLCAMELETGRTHQLRLQLAAMGSAIVGDTRYRGVVGRVHRGLRVDDDTSRFGQEPEAIALQAARIEFEWQGRTVVFSTDRPSWAL 505
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Match: A0A835YKX4_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKX4_9STRA) HSP 1 Score: 200 bits (509), Expect = 1.390e-53 Identity = 134/363 (36.91%), Postives = 171/363 (47.11%), Query Frame = 1 Query: 688 GSYLRVHCDPRTFPLSESTDWSRRIVHANADYVILDKPAGVPTVPTIDNGVQNCVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARNKEAAKQLNELFRERRVKKRYLALLTPTPGPPVLIGPVAHCCRSKAFDGSRRPRIYANYDEELLAGDKWGGAWQDARSTVLLCAPATGAAAAAAVAADRAEMEAAATALEESAAGVATRLEAELAAGLGLGSGASPEEMEQATRGAVSGIEDGEEGSSENKTFDAEAAAVPGAGAEGGEDNHVPHLCAMELETGRTHQLRLQLAAMGAAIVGEKRYRGVVGRVHRGLREDDDTSGFGEEPEEIALQAARIEFEWGGSTVVYSAARPSWA 1776 G+YLR+H PR F + + DW R++HA ADYV++DKPAGVP+VPT DN + +++A A+ G A PLHAVSRLDVCTSG++VFAR+ AA L+ R V+K Y + T G V +G + HCC ++A G +PRIYA +D GD G W+ A VL DR GSGAS + L TGRTHQ+RLQLAA+GA IVG+ RY ++G+VH G D T FG EPEEI L AA +EF+WGG V Y+A P WA Sbjct: 150 GTYLRLHAAPRRFARAAAADWRARVLHACADYVVIDKPAGVPSVPTTDNAADSALWRARAALGGDAAR------PLHAVSRLDVCTSGVLVFARSPAAAAALSGAISARAVRKVYRVVTT---GAEVPLGVLRHCCSTRARTGDAQPRIYAPFDAAKACGD--GSGWRLAELEVLSH--------------DR-------------------------------GSGAST----------------------------------------------------ISLMTGRTHQIRLQLAALGAGIVGDSRYADIIGKVHDGTAASDRTDWFGPEPEEIRLHAAALEFDWGGERVCYTA-EPPWA 403
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Match: A0A5J4Z0G8_PORPP (RNA pseudouridine synthase 6, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0G8_PORPP) HSP 1 Score: 154 bits (389), Expect = 8.160e-37 Identity = 134/440 (30.45%), Postives = 186/440 (42.27%), Query Frame = 1 Query: 475 EELVKFGSVYIGEVVDTSWKHPPSKEKQTTVAAARKKAAKSADQAPFRGTSFEHMKLRRLHPWEAGTL----PPHGSYLRVHCDPRTFPLSESTDWSRRIVH-ANADYVILDKPAGVPTVPTIDNGVQNCVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARNKEAAKQLNELFRERRVKKRYLALLTPTPGPPVLI---GPVAHCCRSKAFDGSRRPRIYANYDEEL---------------LAGDKWGGAWQDARSTVLLCAPATGAAAAAAVAADRAEMEAAATALEESAAGVATRLEAELAAGLGLGSGASPEEMEQATRGAVSGIEDGEEGSSENKTFDAEAAAVPGAGAEGGEDNHVPHLCAMELETGRTHQLRLQLAAMGAAIVGEKRYRGVVGRVHRGLREDDDTSGFGEEPEEIALQAARIEF 1725 E+L++ G+VY+ V+ + K+ + + P +++R+ P + ++ G Y R+H +P +P + + W RIV+ + D+V +DKP +P+VPT+ N V+ Q A+ P PLHAVSRLDVCTSG++VFAR+K AA LNE R R VKKRY LL P P P +I G V H R+ D +PRIY D E L K GGAW A +L + EM +A SE T A+ A + E +EL TGRTHQLRLQ A++G + G+ RYR V GRVHRG+ EDD+ FG EP ++L A+ F Sbjct: 89 EDLIRIGAVYMASVI-----------------SGGKRGSSRSPSTP------NLSRVQRILPADVSSMLDAQSKKGMYFRLHANPARYPDAHAYVWKDRIVYNGDNDFVAVDKPPNLPSVPTLVNVVECARTQVECAL--------ECPAPLHAVSRLDVCTSGVLVFARHKRAAAHLNEQIRNRSVKKRY-TLLVPGPIPREIIQKDGRVLHAARTNLPDNIPKPRIYRLLDLEKDLDAALLQDESYSTPLEAPKIGGAWHVAAMRIL-----------------------------------------------------TEREMNRAEL-------------SEVVTMQADHAGIDVRYTE----------YEVELLTGRTHQLRLQFASLGLPLFGDSRYRPVSGRVHRGVPEDDNLDMFGPEPNRVSLCASVFHF 420
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Match: D7G898_ECTSI (Ribosomal large subunit pseudouridine synthase D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G898_ECTSI) HSP 1 Score: 123 bits (309), Expect = 4.350e-28 Identity = 71/111 (63.96%), Postives = 79/111 (71.17%), Query Frame = 1 Query: 847 CVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARNKEAAKQLNELFRERRVKKRYLALLTPTPGPPVLIGPVAHCCRSKAF-DGSRRPRIYANYDEELLAGDKW 1176 C QASLAVAG+ GSRSLPPPLHAVSRLDVCTSG+VVFAR+K+A KQLNELFR RRVKKRYLALLTP GPPV G + R+ G RR +EE D+W Sbjct: 71 CFQQASLAVAGISPGSRSLPPPLHAVSRLDVCTSGVVVFARHKDATKQLNELFRARRVKKRYLALLTP--GPPVSTGSMVRWRRAWGLVRGLRRKNWRRRREEER---DEW 176
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Match: K7PEZ7_9BACT (Pseudouridine synthase n=1 Tax=uncultured bacterium TaxID=77133 RepID=K7PEZ7_9BACT) HSP 1 Score: 102 bits (255), Expect = 2.400e-20 Identity = 72/218 (33.03%), Postives = 105/218 (48.17%), Query Frame = 1 Query: 409 AEEQATVAQ-LVSYFGAVSVERGEELVKFGSVYIG-EVVDTSWKHPPSKEKQTTVAAARKKAAKSADQAPFRGTSFEHMKLRRLHPWEAGTLPPHGSYLRVHCDPRTFPLSESTDWSRRIVHANADYVILDKPAGVPTVPTIDNGVQNCVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARNKEAAKQLNELFRERRVKKRYLALLTPTP 1056 A+E T+ + LV +FG ++ E GE LV FGSVY + VD+ R L P G Y+RVH +P+ FP+ E DW+ IVH + +V+++KPAG+P T+DN V+N + Q +A+ G L+ RLD SG++V AR +E +Q N L +R++KKRY AL+T P Sbjct: 16 AKEATTLVECLVQHFG-LTTEEGERLVSFGSVYQDRQRVDSD---------------------------------------RALSP---------GQYIRVHLNPKRFPV-EGIDWATTIVHRDKAFVVVNKPAGIPVHATLDNQVENLLHQLRVALGGA----------LYVTQRLDTDVSGLIVVARTQEFQRQFNRLLADRKLKKRYRALVTTAP 173
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Match: A0A1Y1HRB5_KLENI (PseudoU_synth_2 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HRB5_KLENI) HSP 1 Score: 102 bits (255), Expect = 1.460e-19 Identity = 74/226 (32.74%), Postives = 111/226 (49.12%), Query Frame = 1 Query: 475 EELVKFGSVYIGEVVDTSWKHPPSKEKQTTVAAARKKAAKSADQAPFRGTSFE---HMKLRRLHPWEAGTLPPHGSYLRVHCDPRTFPLSESTDWSRRIVHANADYVILDKPAGVPTVPTIDNGVQNCVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARNKEAAKQLNELFRERRVKKRYLALLTPTPGPPVLIGPVAHCCRSKAFDGSRRPRIYAN 1143 E+L+KFG+V+ ++ PP + + + + AK++D+ +S M++ RL + L G YLRVH P+ FP DW R++ DYVILDKPAGVP T+DN V+NC A+ + L L PL RLDV T G +V A+ + N+L +R+V K Y AL P +G + H + K++ PRI ++ Sbjct: 65 EDLIKFGAVHYAPLLPP----PPPNSRPSVHSQWSESTAKASDEFGLHPSSQALKLMMRVGRLQ--DPFRLLRQGGYLRVHVHPKRFPRCYEVDWRGRVLTETPDYVILDKPAGVPVQGTVDNLVENC---AACLLEAL-----GLEEPLKVTHRLDVGTEGCLVLAKTPAFLRSFNQLLADRKVHKTYRALAAARPP----LGRLLHWTQPKSY----APRILSD 268
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Match: A0A7S0H4S4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0H4S4_9CRYP) HSP 1 Score: 98.6 bits (244), Expect = 3.650e-19 Identity = 61/180 (33.89%), Postives = 93/180 (51.67%), Query Frame = 1 Query: 688 GSYLRVHCDPRTFPLSESTDWSRRIVHANADYVILDKPAGVPTVPTIDNGVQNCVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARNKEAAKQLNELFRERRVKKRYLALLTPTPGPPVLIGPVAHC-CRSKAFDGSRRPRIYANYDEELLAGDKWGGAWQDARSTVLLCAP 1224 GSY+RVH P+ F DW+ R++ + D+++++KP GVP++ TIDN ++ CV + + SL P SRLDVCT+G+++FA+ +E N+ ERR +K Y L + G V G V H CR + + RP + + + D WQDA +L C P Sbjct: 90 GSYVRVHAQPKRFLTVYKMDWNARVICESEDFIVINKPPGVPSLTTIDNAIE-CVMSQVEKIKNI-----SLMP----TSRLDVCTAGVLIFAKTREFCMSTNKAMSERRSEKIYKLL---SEGE-VQTGTVRHLFCRKRKGHKNSRPTLLRAWQDLTSRKDLQEEGWQDAVLEILDCRP 255
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Match: A0A7S0TTK8_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TTK8_HEMAN) HSP 1 Score: 95.5 bits (236), Expect = 2.030e-18 Identity = 57/151 (37.75%), Postives = 82/151 (54.30%), Query Frame = 1 Query: 682 PHGSYLRVHCDPRTFPLSESTDWSRRIVHANADYVILDKPAGVPTVPTIDNGVQNCVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARNKEAAKQLNELFRERRVKKRYLALLTPTPGPPVLIGPVAHCCRSKAFDGSRRPRI 1134 P GSYLRVH PR FP++ + DW +R+VH N++YVI++KP G+P ++DN + A A++ GS + A+ RLDV T G++ R A + L R RRV+K YLAL + P +G + H R R PR+ Sbjct: 93 PQGSYLRVHPSPRRFPVAWTADWQKRLVHVNSNYVIVNKPGGLPCHASLDNAKETTEACAERALSA-EVGS------ISALHRLDVPTHGLMCLGRTPFFAAHFSRLLRMRRVRKEYLALASAPPQ----LGSMVHYMRPS----ERSPRV 228
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Match: A0A8J9RE80_9CHLO (Probable mitochondrial RNA pseudouridine synthase Rpusd4 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RE80_9CHLO) HSP 1 Score: 99.0 bits (245), Expect = 4.090e-18 Identity = 51/124 (41.13%), Postives = 71/124 (57.26%), Query Frame = 1 Query: 691 SYLRVHCDPRTFPLSESTDWSRRIVHANADYVILDKPAGVPTVPTIDNGVQNCVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARNKEAAKQLNELFRERRVKKRYLALLTPTPGP 1062 +Y+RVH P+ FP + DW RIVHA D+V+++KPAGVP VPT+DN +++C LA G S PL + RLD CT G+VV R ++ NEL R +++ LT +P P Sbjct: 127 AYVRVHVHPKRFPNAYKVDWKARIVHAAQDFVVINKPAGVPVVPTVDNILESC-----LACTAQALGESS---PLLSTHRLDTCTEGLVVLGRKRDFVAAFNELLRLPGAVQKFYRALTKSPPP 242
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Match: L1JPX0_GUITC (PseudoU_synth_2 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JPX0_GUITC) HSP 1 Score: 94.4 bits (233), Expect = 1.780e-17 Identity = 66/189 (34.92%), Postives = 96/189 (50.79%), Query Frame = 1 Query: 475 EELVKFGSVYIGEVVDTSWKHPPSKEKQTTVAAARKKAAKSADQAPFRGTSFEHMKLRRLHPWEAGTLPPHGSYLRVHCDPRTFPLSESTDWSRRIVHANADYVILDKPAGVPTVPTIDNGVQNCVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARNKEAAKQLNELFRERRVKKRYLAL 1041 +ELVKFG+VY G D K KQ+ V A R + + ++L LP GSY+RVH P+ DWS R++ + D++++DKP GVP++ TIDNGV+ CV + + SL P SRLDVCT+G+++FA+ ++ + N+ ERR K YL L Sbjct: 23 KELVKFGAVYTGPPQDAMDK------KQSPVKAVR---------------TMQDVEL----------LP--GSYVRVHAQPKRCLSVYKIDWSARVIRESQDFIVIDKPPGVPSLTTIDNGVE-CVMSQVEKMRNI-----SLMP----TSRLDVCTAGVLIFAKTRDFCLKTNKAMSERRCDKVYLLL 168 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1914.5649.1 >prot_L-elsbetiae_contig1914.5649.1 ID=prot_L-elsbetiae_contig1914.5649.1|Name=mRNA_L-elsbetiae_contig1914.5649.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=577bp MAIRRGPLLASIAASFWCTGQAFVGVQLAATHRSATPVGNKYIGNSSSSSback to top mRNA from alignment at L-elsbetiae_contig1914:19752..22071+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1914.5649.1 ID=mRNA_L-elsbetiae_contig1914.5649.1|Name=mRNA_L-elsbetiae_contig1914.5649.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2320bp|location=Sequence derived from alignment at L-elsbetiae_contig1914:19752..22071+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1914:19752..22071+ >mRNA_L-elsbetiae_contig1914.5649.1 ID=mRNA_L-elsbetiae_contig1914.5649.1|Name=mRNA_L-elsbetiae_contig1914.5649.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3462bp|location=Sequence derived from alignment at L-elsbetiae_contig1914:19752..22071+ (Laminarionema elsbetiae ELsaHSoW15)back to top |