mRNA_L-elsbetiae_contig1914.5649.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1914.5649.1
Unique NamemRNA_L-elsbetiae_contig1914.5649.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Match: D8LGX6_ECTSI (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGX6_ECTSI)

HSP 1 Score: 669 bits (1726), Expect = 4.120e-233
Identity = 359/507 (70.81%), Postives = 394/507 (77.71%), Query Frame = 1
Query:  262 FNMASVSDPVSAVAERCAAETTFQGEHRVVHIATPAPPPPWMEAEDEEDAEEQ-ATVAQLVSYFGAVSVERGEELVKFGSVYIGEVVDTSWKHPPSKEKQTTVAAARKKAAKSADQAPFRGTSFEHMKLRRLHPWEAGTLPPHGSYLRVHCDPRTFPLSESTDWSRRIVHANADYVILDKPAGVPTVPTIDNGVQNCVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARNKEAAKQLNELFRERRVKKRYLALLTPTPGPPVLIGPVAHCCRSKAFDGSRRPRIYANYDEELLAGDKWGGAWQDARSTVLLCAPATGAAAAAAVAADRAEMEAAATALEESAAGVATRLEAELAAGLGLGSGASPEEMEQATRGAVSGIEDGEEGSSENKTFDAEAAAVPGAGAEGGEDNHVPHLCAMELETGRTHQLRLQLAAMGAAIVGEKRYRGVVGRVHRGLREDDDTSGFGEEPEEIALQAARIEFEWGGSTVVYSAARPSWAL 1779
              +AS S  V+ +AE C+AETT+QGEHRVVHIATP  PPPW+E  DEE  EEQ AT+A+LVS+FGAVS ERG ELVKFGSVYIGEVVDT+W+HPPSKEKQ T+AAARKKA KSADQAPFRGTSFEHM+LRRLHPWE+G  PPHG+YLRVHCDPRTFP S+  DWS+RIVH N D+V++DKPAGVPTVPTIDNGVQNCVFQASLAVAG+P GSRSLPPPLHAVSRLDVCTSGIVVFAR+KEAAKQLNELFR RRVKKRYLALLTP  GP V  G +AHCCRSKAFDGSRRPRIYA++DEELLAGDKWGGAWQ+ARSTVLLCAPATG+A                                             PEE+E A RG      +G E    +   DAEA     A  E  E +H PHLCAMELETGRTHQLRLQLAAMG+AIVG+ RYRGVVGRVHRGLR DDDTS FG+EPE IALQAARIEFEW G TVV+S  RPSWAL
Sbjct:   10 ITIASSSAAVTGIAEGCSAETTYQGEHRVVHIATPGAPPPWLE--DEEQGEEQRATIAELVSHFGAVSRERGVELVKFGSVYIGEVVDTNWRHPPSKEKQMTIAAARKKALKSADQAPFRGTSFEHMRLRRLHPWESGNFPPHGAYLRVHCDPRTFPASQVMDWSKRIVHKNEDFVVVDKPAGVPTVPTIDNGVQNCVFQASLAVAGMPPGSRSLPPPLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRARRVKKRYLALLTP--GPAVPTGSMAHCCRSKAFDGSRRPRIYADFDEELLAGDKWGGAWQEARSTVLLCAPATGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEEIEAAARGG-----EGREEEDGSTAPDAEATTAAEAARE--EGDHAPHLCAMELETGRTHQLRLQLAAMGSAIVGDTRYRGVVGRVHRGLRVDDDTSRFGQEPEAIALQAARIEFEWQGRTVVFSTDRPSWAL 505          
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Match: A0A835YKX4_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKX4_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.390e-53
Identity = 134/363 (36.91%), Postives = 171/363 (47.11%), Query Frame = 1
Query:  688 GSYLRVHCDPRTFPLSESTDWSRRIVHANADYVILDKPAGVPTVPTIDNGVQNCVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARNKEAAKQLNELFRERRVKKRYLALLTPTPGPPVLIGPVAHCCRSKAFDGSRRPRIYANYDEELLAGDKWGGAWQDARSTVLLCAPATGAAAAAAVAADRAEMEAAATALEESAAGVATRLEAELAAGLGLGSGASPEEMEQATRGAVSGIEDGEEGSSENKTFDAEAAAVPGAGAEGGEDNHVPHLCAMELETGRTHQLRLQLAAMGAAIVGEKRYRGVVGRVHRGLREDDDTSGFGEEPEEIALQAARIEFEWGGSTVVYSAARPSWA 1776
            G+YLR+H  PR F  + + DW  R++HA ADYV++DKPAGVP+VPT DN   + +++A  A+ G  A       PLHAVSRLDVCTSG++VFAR+  AA  L+     R V+K Y  + T   G  V +G + HCC ++A  G  +PRIYA +D     GD  G  W+ A   VL                DR                               GSGAS                                                     + L TGRTHQ+RLQLAA+GA IVG+ RY  ++G+VH G    D T  FG EPEEI L AA +EF+WGG  V Y+A  P WA
Sbjct:  150 GTYLRLHAAPRRFARAAAADWRARVLHACADYVVIDKPAGVPSVPTTDNAADSALWRARAALGGDAAR------PLHAVSRLDVCTSGVLVFARSPAAAAALSGAISARAVRKVYRVVTT---GAEVPLGVLRHCCSTRARTGDAQPRIYAPFDAAKACGD--GSGWRLAELEVLSH--------------DR-------------------------------GSGAST----------------------------------------------------ISLMTGRTHQIRLQLAALGAGIVGDSRYADIIGKVHDGTAASDRTDWFGPEPEEIRLHAAALEFDWGGERVCYTA-EPPWA 403          
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Match: A0A5J4Z0G8_PORPP (RNA pseudouridine synthase 6, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0G8_PORPP)

HSP 1 Score: 154 bits (389), Expect = 8.160e-37
Identity = 134/440 (30.45%), Postives = 186/440 (42.27%), Query Frame = 1
Query:  475 EELVKFGSVYIGEVVDTSWKHPPSKEKQTTVAAARKKAAKSADQAPFRGTSFEHMKLRRLHPWEAGTL----PPHGSYLRVHCDPRTFPLSESTDWSRRIVH-ANADYVILDKPAGVPTVPTIDNGVQNCVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARNKEAAKQLNELFRERRVKKRYLALLTPTPGPPVLI---GPVAHCCRSKAFDGSRRPRIYANYDEEL---------------LAGDKWGGAWQDARSTVLLCAPATGAAAAAAVAADRAEMEAAATALEESAAGVATRLEAELAAGLGLGSGASPEEMEQATRGAVSGIEDGEEGSSENKTFDAEAAAVPGAGAEGGEDNHVPHLCAMELETGRTHQLRLQLAAMGAAIVGEKRYRGVVGRVHRGLREDDDTSGFGEEPEEIALQAARIEF 1725
            E+L++ G+VY+  V+                 +  K+ +  +   P         +++R+ P +  ++       G Y R+H +P  +P + +  W  RIV+  + D+V +DKP  +P+VPT+ N V+    Q   A+          P PLHAVSRLDVCTSG++VFAR+K AA  LNE  R R VKKRY  LL P P P  +I   G V H  R+   D   +PRIY   D E                L   K GGAW  A   +L                                                     +  EM +A               SE  T  A+ A +     E            +EL TGRTHQLRLQ A++G  + G+ RYR V GRVHRG+ EDD+   FG EP  ++L A+   F
Sbjct:   89 EDLIRIGAVYMASVI-----------------SGGKRGSSRSPSTP------NLSRVQRILPADVSSMLDAQSKKGMYFRLHANPARYPDAHAYVWKDRIVYNGDNDFVAVDKPPNLPSVPTLVNVVECARTQVECAL--------ECPAPLHAVSRLDVCTSGVLVFARHKRAAAHLNEQIRNRSVKKRY-TLLVPGPIPREIIQKDGRVLHAARTNLPDNIPKPRIYRLLDLEKDLDAALLQDESYSTPLEAPKIGGAWHVAAMRIL-----------------------------------------------------TEREMNRAEL-------------SEVVTMQADHAGIDVRYTE----------YEVELLTGRTHQLRLQFASLGLPLFGDSRYRPVSGRVHRGVPEDDNLDMFGPEPNRVSLCASVFHF 420          
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Match: D7G898_ECTSI (Ribosomal large subunit pseudouridine synthase D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G898_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 4.350e-28
Identity = 71/111 (63.96%), Postives = 79/111 (71.17%), Query Frame = 1
Query:  847 CVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARNKEAAKQLNELFRERRVKKRYLALLTPTPGPPVLIGPVAHCCRSKAF-DGSRRPRIYANYDEELLAGDKW 1176
            C  QASLAVAG+  GSRSLPPPLHAVSRLDVCTSG+VVFAR+K+A KQLNELFR RRVKKRYLALLTP  GPPV  G +    R+     G RR       +EE    D+W
Sbjct:   71 CFQQASLAVAGISPGSRSLPPPLHAVSRLDVCTSGVVVFARHKDATKQLNELFRARRVKKRYLALLTP--GPPVSTGSMVRWRRAWGLVRGLRRKNWRRRREEER---DEW 176          
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Match: K7PEZ7_9BACT (Pseudouridine synthase n=1 Tax=uncultured bacterium TaxID=77133 RepID=K7PEZ7_9BACT)

HSP 1 Score: 102 bits (255), Expect = 2.400e-20
Identity = 72/218 (33.03%), Postives = 105/218 (48.17%), Query Frame = 1
Query:  409 AEEQATVAQ-LVSYFGAVSVERGEELVKFGSVYIG-EVVDTSWKHPPSKEKQTTVAAARKKAAKSADQAPFRGTSFEHMKLRRLHPWEAGTLPPHGSYLRVHCDPRTFPLSESTDWSRRIVHANADYVILDKPAGVPTVPTIDNGVQNCVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARNKEAAKQLNELFRERRVKKRYLALLTPTP 1056
            A+E  T+ + LV +FG ++ E GE LV FGSVY   + VD+                                        R L P         G Y+RVH +P+ FP+ E  DW+  IVH +  +V+++KPAG+P   T+DN V+N + Q  +A+ G           L+   RLD   SG++V AR +E  +Q N L  +R++KKRY AL+T  P
Sbjct:   16 AKEATTLVECLVQHFG-LTTEEGERLVSFGSVYQDRQRVDSD---------------------------------------RALSP---------GQYIRVHLNPKRFPV-EGIDWATTIVHRDKAFVVVNKPAGIPVHATLDNQVENLLHQLRVALGGA----------LYVTQRLDTDVSGLIVVARTQEFQRQFNRLLADRKLKKRYRALVTTAP 173          
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Match: A0A1Y1HRB5_KLENI (PseudoU_synth_2 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HRB5_KLENI)

HSP 1 Score: 102 bits (255), Expect = 1.460e-19
Identity = 74/226 (32.74%), Postives = 111/226 (49.12%), Query Frame = 1
Query:  475 EELVKFGSVYIGEVVDTSWKHPPSKEKQTTVAAARKKAAKSADQAPFRGTSFE---HMKLRRLHPWEAGTLPPHGSYLRVHCDPRTFPLSESTDWSRRIVHANADYVILDKPAGVPTVPTIDNGVQNCVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARNKEAAKQLNELFRERRVKKRYLALLTPTPGPPVLIGPVAHCCRSKAFDGSRRPRIYAN 1143
            E+L+KFG+V+   ++      PP   + +  +   +  AK++D+     +S      M++ RL   +   L   G YLRVH  P+ FP     DW  R++    DYVILDKPAGVP   T+DN V+NC   A+  +  L      L  PL    RLDV T G +V A+     +  N+L  +R+V K Y AL    P     +G + H  + K++     PRI ++
Sbjct:   65 EDLIKFGAVHYAPLLPP----PPPNSRPSVHSQWSESTAKASDEFGLHPSSQALKLMMRVGRLQ--DPFRLLRQGGYLRVHVHPKRFPRCYEVDWRGRVLTETPDYVILDKPAGVPVQGTVDNLVENC---AACLLEAL-----GLEEPLKVTHRLDVGTEGCLVLAKTPAFLRSFNQLLADRKVHKTYRALAAARPP----LGRLLHWTQPKSY----APRILSD 268          
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Match: A0A7S0H4S4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0H4S4_9CRYP)

HSP 1 Score: 98.6 bits (244), Expect = 3.650e-19
Identity = 61/180 (33.89%), Postives = 93/180 (51.67%), Query Frame = 1
Query:  688 GSYLRVHCDPRTFPLSESTDWSRRIVHANADYVILDKPAGVPTVPTIDNGVQNCVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARNKEAAKQLNELFRERRVKKRYLALLTPTPGPPVLIGPVAHC-CRSKAFDGSRRPRIYANYDEELLAGDKWGGAWQDARSTVLLCAP 1224
            GSY+RVH  P+ F      DW+ R++  + D+++++KP GVP++ TIDN ++ CV      +  +     SL P     SRLDVCT+G+++FA+ +E     N+   ERR +K Y  L   + G  V  G V H  CR +    + RP +   + +     D     WQDA   +L C P
Sbjct:   90 GSYVRVHAQPKRFLTVYKMDWNARVICESEDFIVINKPPGVPSLTTIDNAIE-CVMSQVEKIKNI-----SLMP----TSRLDVCTAGVLIFAKTREFCMSTNKAMSERRSEKIYKLL---SEGE-VQTGTVRHLFCRKRKGHKNSRPTLLRAWQDLTSRKDLQEEGWQDAVLEILDCRP 255          
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Match: A0A7S0TTK8_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TTK8_HEMAN)

HSP 1 Score: 95.5 bits (236), Expect = 2.030e-18
Identity = 57/151 (37.75%), Postives = 82/151 (54.30%), Query Frame = 1
Query:  682 PHGSYLRVHCDPRTFPLSESTDWSRRIVHANADYVILDKPAGVPTVPTIDNGVQNCVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARNKEAAKQLNELFRERRVKKRYLALLTPTPGPPVLIGPVAHCCRSKAFDGSRRPRI 1134
            P GSYLRVH  PR FP++ + DW +R+VH N++YVI++KP G+P   ++DN  +     A  A++    GS      + A+ RLDV T G++   R    A   + L R RRV+K YLAL +  P     +G + H  R       R PR+
Sbjct:   93 PQGSYLRVHPSPRRFPVAWTADWQKRLVHVNSNYVIVNKPGGLPCHASLDNAKETTEACAERALSA-EVGS------ISALHRLDVPTHGLMCLGRTPFFAAHFSRLLRMRRVRKEYLALASAPPQ----LGSMVHYMRPS----ERSPRV 228          
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Match: A0A8J9RE80_9CHLO (Probable mitochondrial RNA pseudouridine synthase Rpusd4 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RE80_9CHLO)

HSP 1 Score: 99.0 bits (245), Expect = 4.090e-18
Identity = 51/124 (41.13%), Postives = 71/124 (57.26%), Query Frame = 1
Query:  691 SYLRVHCDPRTFPLSESTDWSRRIVHANADYVILDKPAGVPTVPTIDNGVQNCVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARNKEAAKQLNELFRERRVKKRYLALLTPTPGP 1062
            +Y+RVH  P+ FP +   DW  RIVHA  D+V+++KPAGVP VPT+DN +++C     LA      G  S   PL +  RLD CT G+VV  R ++     NEL R     +++   LT +P P
Sbjct:  127 AYVRVHVHPKRFPNAYKVDWKARIVHAAQDFVVINKPAGVPVVPTVDNILESC-----LACTAQALGESS---PLLSTHRLDTCTEGLVVLGRKRDFVAAFNELLRLPGAVQKFYRALTKSPPP 242          
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Match: L1JPX0_GUITC (PseudoU_synth_2 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JPX0_GUITC)

HSP 1 Score: 94.4 bits (233), Expect = 1.780e-17
Identity = 66/189 (34.92%), Postives = 96/189 (50.79%), Query Frame = 1
Query:  475 EELVKFGSVYIGEVVDTSWKHPPSKEKQTTVAAARKKAAKSADQAPFRGTSFEHMKLRRLHPWEAGTLPPHGSYLRVHCDPRTFPLSESTDWSRRIVHANADYVILDKPAGVPTVPTIDNGVQNCVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARNKEAAKQLNELFRERRVKKRYLAL 1041
            +ELVKFG+VY G   D   K      KQ+ V A R               + + ++L          LP  GSY+RVH  P+        DWS R++  + D++++DKP GVP++ TIDNGV+ CV      +  +     SL P     SRLDVCT+G+++FA+ ++   + N+   ERR  K YL L
Sbjct:   23 KELVKFGAVYTGPPQDAMDK------KQSPVKAVR---------------TMQDVEL----------LP--GSYVRVHAQPKRCLSVYKIDWSARVIRESQDFIVIDKPPGVPSLTTIDNGVE-CVMSQVEKMRNI-----SLMP----TSRLDVCTAGVLIFAKTRDFCLKTNKAMSERRCDKVYLLL 168          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1914.5649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGX6_ECTSI4.120e-23370.81PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A835YKX4_9STRA1.390e-5336.91Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A5J4Z0G8_PORPP8.160e-3730.45RNA pseudouridine synthase 6, chloroplastic n=1 Ta... [more]
D7G898_ECTSI4.350e-2863.96Ribosomal large subunit pseudouridine synthase D n... [more]
K7PEZ7_9BACT2.400e-2033.03Pseudouridine synthase n=1 Tax=uncultured bacteriu... [more]
A0A1Y1HRB5_KLENI1.460e-1932.74PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A7S0H4S4_9CRYP3.650e-1933.89Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S0TTK8_HEMAN2.030e-1837.75Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A8J9RE80_9CHLO4.090e-1841.13Probable mitochondrial RNA pseudouridine synthase ... [more]
L1JPX0_GUITC1.780e-1734.92PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1914contigL-elsbetiae_contig1914:19752..22071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score679.1
Seed ortholog evalue1.8e-192
Seed eggNOG ortholog2880.D8LGX6
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0003824,GO:0006139,GO:0006206,GO:0006213,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009119,GO:0009451,GO:0009982,GO:0009987,GO:0016070,GO:0016853,GO:0016866,GO:0018130,GO:0019438,GO:0019858,GO:0034641,GO:0034654,GO:0043094,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046087,GO:0046131,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090304,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0564@1,KOG1919@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPseudouridine synthase, catalytic domain
Ec32 orthologEc-14_001540.1
Exons1
Model size2320
Cds size1731
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1914.5649.1prot_L-elsbetiae_contig1914.5649.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1914 19824..21554 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.4230645-UTR-L-elsbetiae_contig1914:19751..198231622815795.4230645-UTR-L-elsbetiae_contig1914:19751..19823Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1914 19752..19823 +
1691683107.8604023-UTR-L-elsbetiae_contig1914:19751..198231691683107.8604023-UTR-L-elsbetiae_contig1914:19751..19823Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1914 19752..19823 +
1622815795.4418192-UTR-L-elsbetiae_contig1914:21554..220711622815795.4418192-UTR-L-elsbetiae_contig1914:21554..22071Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1914 21555..22071 +
1691683107.8794441-UTR-L-elsbetiae_contig1914:21554..220711691683107.8794441-UTR-L-elsbetiae_contig1914:21554..22071Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1914 21555..22071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.432836-CDS-L-elsbetiae_contig1914:19823..215541622815795.432836-CDS-L-elsbetiae_contig1914:19823..21554Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1914 19824..21554 +
1691683107.8710556-CDS-L-elsbetiae_contig1914:19823..215541691683107.8710556-CDS-L-elsbetiae_contig1914:19823..21554Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1914 19824..21554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1914.5649.1

>prot_L-elsbetiae_contig1914.5649.1 ID=prot_L-elsbetiae_contig1914.5649.1|Name=mRNA_L-elsbetiae_contig1914.5649.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=577bp
MAIRRGPLLASIAASFWCTGQAFVGVQLAATHRSATPVGNKYIGNSSSSS
RIRRRRRSLIKPPFNMASVSDPVSAVAERCAAETTFQGEHRVVHIATPAP
PPPWMEAEDEEDAEEQATVAQLVSYFGAVSVERGEELVKFGSVYIGEVVD
TSWKHPPSKEKQTTVAAARKKAAKSADQAPFRGTSFEHMKLRRLHPWEAG
TLPPHGSYLRVHCDPRTFPLSESTDWSRRIVHANADYVILDKPAGVPTVP
TIDNGVQNCVFQASLAVAGLPAGSRSLPPPLHAVSRLDVCTSGIVVFARN
KEAAKQLNELFRERRVKKRYLALLTPTPGPPVLIGPVAHCCRSKAFDGSR
RPRIYANYDEELLAGDKWGGAWQDARSTVLLCAPATGAAAAAAVAADRAE
MEAAATALEESAAGVATRLEAELAAGLGLGSGASPEEMEQATRGAVSGIE
DGEEGSSENKTFDAEAAAVPGAGAEGGEDNHVPHLCAMELETGRTHQLRL
QLAAMGAAIVGEKRYRGVVGRVHRGLREDDDTSGFGEEPEEIALQAARIE
FEWGGSTVVYSAARPSWALSDENASQ*
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mRNA from alignment at L-elsbetiae_contig1914:19752..22071+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1914.5649.1 ID=mRNA_L-elsbetiae_contig1914.5649.1|Name=mRNA_L-elsbetiae_contig1914.5649.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2320bp|location=Sequence derived from alignment at L-elsbetiae_contig1914:19752..22071+ (Laminarionema elsbetiae ELsaHSoW15)
CACGCTTCCGCAGCCCAGCGACCAACCGCAACCGCATGACCGGTACGTGG TACTTGCTGTGCTGAAGATTTCATGGCGATCCGGAGGGGACCGCTACTGG CGAGCATAGCTGCTTCTTTTTGGTGTACGGGTCAGGCTTTTGTTGGAGTT CAGCTTGCAGCTACCCATCGATCGGCAACGCCGGTGGGAAACAAGTATAT TGGCAATAGCAGCAGCAGCAGCAGAATCAGACGCAGGAGAAGAAGCCTAA TCAAGCCGCCATTCAACATGGCGAGTGTAAGCGACCCGGTGTCAGCAGTA GCTGAGAGGTGCGCCGCGGAGACAACGTTTCAGGGGGAACACCGCGTGGT GCACATCGCGACACCGGCGCCTCCCCCGCCGTGGATGGAGGCCGAAGACG AGGAAGACGCCGAGGAGCAGGCGACGGTGGCGCAGCTAGTGTCCTACTTC GGAGCTGTTAGTGTGGAGCGGGGGGAGGAGCTCGTCAAGTTTGGCAGCGT GTACATCGGTGAAGTCGTAGACACGAGCTGGAAGCACCCACCCAGCAAAG AGAAACAGACCACCGTCGCAGCAGCAAGGAAGAAGGCGGCAAAATCGGCC GACCAGGCTCCATTCCGCGGCACGAGCTTCGAGCACATGAAGCTACGGCG CCTGCACCCCTGGGAAGCCGGCACTCTCCCGCCCCACGGCTCGTACCTCC GGGTCCACTGCGACCCCCGAACGTTCCCGCTCTCGGAGAGCACGGACTGG AGCAGGCGAATCGTGCACGCCAACGCCGACTACGTCATTCTCGACAAACC GGCCGGCGTCCCGACGGTGCCGACCATCGATAACGGGGTGCAGAACTGCG TGTTTCAGGCGAGCCTGGCGGTGGCGGGCCTGCCCGCCGGGTCGCGCTCT CTGCCGCCGCCGCTGCACGCGGTTTCCCGGCTGGATGTCTGCACCTCGGG GATAGTGGTCTTCGCCAGGAACAAGGAGGCGGCCAAGCAGCTGAACGAGC TGTTCCGCGAGCGGAGGGTGAAGAAGCGATACCTCGCCCTCCTCACCCCG ACCCCCGGCCCACCCGTGCTGATCGGGCCGGTGGCGCATTGTTGCCGCTC GAAGGCATTCGACGGTTCGCGCCGCCCGAGGATCTACGCCAACTACGACG AGGAGCTGCTCGCGGGCGACAAGTGGGGCGGCGCCTGGCAGGACGCGCGA TCGACGGTTTTGCTGTGCGCGCCGGCGACCGGCGCCGCAGCTGCCGCAGC GGTGGCCGCCGATCGGGCGGAGATGGAGGCGGCGGCGACAGCCCTGGAAG AATCCGCGGCGGGCGTTGCAACGAGGCTGGAAGCAGAGCTGGCGGCGGGA CTGGGGCTGGGTTCCGGGGCTTCGCCGGAAGAAATGGAGCAGGCGACACG CGGAGCGGTGTCGGGGATCGAGGATGGGGAGGAGGGGTCCTCGGAGAATA AGACATTTGATGCGGAAGCAGCGGCTGTGCCAGGAGCGGGAGCGGAGGGC GGAGAAGACAACCACGTCCCGCACCTCTGCGCCATGGAGCTGGAGACGGG CCGGACCCATCAGCTGCGGCTGCAGTTGGCGGCGATGGGAGCGGCAATAG TGGGTGAAAAGCGCTACCGCGGCGTTGTGGGCCGGGTGCACCGCGGCTTG CGCGAGGACGACGACACGTCCGGATTTGGCGAAGAGCCGGAGGAGATCGC ATTGCAGGCGGCGCGGATAGAGTTCGAGTGGGGAGGCAGCACGGTCGTCT ACTCTGCCGCCAGGCCTTCGTGGGCGCTTTCGGACGAAAATGCATCGCAG TGACAAGAGTGAACGGGTGGGAGGAGGGGGCGAGCGGTGTGGTACTATGT AGTGCTGGGGATGTTTGAAGGAGCAACGAACGGTGTCCCAGCAAGTTGGA CTCGTGGGTTAGAATAACTGTTTGGTTGAAGAGGCACGCGATACATATTG TAGAGGAGGTTTTGTTTATTTTTTCTTTGCTGCTACGTTTTCATTGCGGA ATGAATTTTGTACTGTTGTAGCGGATGACGGTGAGGGCACGGACGCGTTC AGTAGTGAGTTTACAACAGTTACCCTAGAAAATACTGCTGTTCCTCCGTT GGGGGGCATGCGTCGGCCGATGGCGATTTTGTAAGTTCTAAACATGATGT GGTTTGTGTCCCATTTTCGTCAAAACGCAGCGCACTCTCTGAAAGTAGTG TCGTTTAGTCTGTAATTCGGATTCATGGCCGCCTACTTTTGTGTACGTTC GCCGGAAGTTAGTCTCTCGTGCGTCTTTTTTCTCTTTTTCTTACGGATAA TGTTTGCTTGCTGCGCTGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1914:19752..22071+

>mRNA_L-elsbetiae_contig1914.5649.1 ID=mRNA_L-elsbetiae_contig1914.5649.1|Name=mRNA_L-elsbetiae_contig1914.5649.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3462bp|location=Sequence derived from alignment at L-elsbetiae_contig1914:19752..22071+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGATCCGGAGGGGACCGCTACTGGCGAGCATAGCTGCTTCTTTTTG
GTGTACGGGTCAGGCTTTTGTTGGAGTTCAGCTTGCAGCTACCCATCGAT
CGGCAACGCCGGTGGGAAACAAGTATATTGGCAATAGCAGCAGCAGCAGC
AGAATCAGACGCAGGAGAAGAAGCCTAATCAAGCCGCCATTCAACATGGC
GAGTGTAAGCGACCCGGTGTCAGCAGTAGCTGAGAGGTGCGCCGCGGAGA
CAACGTTTCAGGGGGAACACCGCGTGGTGCACATCGCGACACCGGCGCCT
CCCCCGCCGTGGATGGAGGCCGAAGACGAGGAAGACGCCGAGGAGCAGGC
GACGGTGGCGCAGCTAGTGTCCTACTTCGGAGCTGTTAGTGTGGAGCGGG
GGGAGGAGCTCGTCAAGTTTGGCAGCGTGTACATCGGTGAAGTCGTAGAC
ACGAGCTGGAAGCACCCACCCAGCAAAGAGAAACAGACCACCGTCGCAGC
AGCAAGGAAGAAGGCGGCAAAATCGGCCGACCAGGCTCCATTCCGCGGCA
CGAGCTTCGAGCACATGAAGCTACGGCGCCTGCACCCCTGGGAAGCCGGC
ACTCTCCCGCCCCACGGCTCGTACCTCCGGGTCCACTGCGACCCCCGAAC
GTTCCCGCTCTCGGAGAGCACGGACTGGAGCAGGCGAATCGTGCACGCCA
ACGCCGACTACGTCATTCTCGACAAACCGGCCGGCGTCCCGACGGTGCCG
ACCATCGATAACGGGGTGCAGAACTGCGTGTTTCAGGCGAGCCTGGCGGT
GGCGGGCCTGCCCGCCGGGTCGCGCTCTCTGCCGCCGCCGCTGCACGCGG
TTTCCCGGCTGGATGTCTGCACCTCGGGGATAGTGGTCTTCGCCAGGAAC
AAGGAGGCGGCCAAGCAGCTGAACGAGCTGTTCCGCGAGCGGAGGGTGAA
GAAGCGATACCTCGCCCTCCTCACCCCGACCCCCGGCCCACCCGTGCTGA
TCGGGCCGGTGGCGCATTGTTGCCGCTCGAAGGCATTCGACGGTTCGCGC
CGCCCGAGGATCTACGCCAACTACGACGAGGAGCTGCTCGCGGGCGACAA
GTGGGGCGGCGCCTGGCAGGACGCGCGATCGACGGTTTTGCTGTGCGCGC
CGGCGACCGGCGCCGCAGCTGCCGCAGCGGTGGCCGCCGATCGGGCGGAG
ATGGAGGCGGCGGCGACAGCCCTGGAAGAATCCGCGGCGGGCGTTGCAAC
GAGGCTGGAAGCAGAGCTGGCGGCGGGACTGGGGCTGGGTTCCGGGGCTT
CGCCGGAAGAAATGGAGCAGGCGACACGCGGAGCGGTGTCGGGGATCGAG
GATGGGGAGGAGGGGTCCTCGGAGAATAAGACATTTGATGCGGAAGCAGC
GGCTGTGCCAGGAGCGGGAGCGGAGGGCGGAGAAGACAACCACGTCCCGC
ACCTCTGCGCCATGGAGCTGGAGACGGGCCGGACCCATCAGCTGCGGCTG
CAGTTGGCGGCGATGGGAGCGGCAATAGTGGGTGAAAAGCGCTACCGCGG
CGTTGTGGGCCGGGTGCACCGCGGCTTGCGCGAGGACGACGACACGTCCG
GATTTGGCGAAGAGCCGGAGGAGATCGCATTGCAGGCGGCGCGGATAGAG
TTCGAGTGGGGAGGCAGCACGGTCGTCTACTCTGCCGCCAGGCCTTCGTG
GGCGCTTTCGGACGAAAATGCATCGCAGTGAATGGCGATCCGGAGGGGAC
CGCTACTGGCGAGCATAGCTGCTTCTTTTTGGTGTACGGGTCAGGCTTTT
GTTGGAGTTCAGCTTGCAGCTACCCATCGATCGGCAACGCCGGTGGGAAA
CAAGTATATTGGCAATAGCAGCAGCAGCAGCAGAATCAGACGCAGGAGAA
GAAGCCTAATCAAGCCGCCATTCAACATGGCGAGTGTAAGCGACCCGGTG
TCAGCAGTAGCTGAGAGGTGCGCCGCGGAGACAACGTTTCAGGGGGAACA
CCGCGTGGTGCACATCGCGACACCGGCGCCTCCCCCGCCGTGGATGGAGG
CCGAAGACGAGGAAGACGCCGAGGAGCAGGCGACGGTGGCGCAGCTAGTG
TCCTACTTCGGAGCTGTTAGTGTGGAGCGGGGGGAGGAGCTCGTCAAGTT
TGGCAGCGTGTACATCGGTGAAGTCGTAGACACGAGCTGGAAGCACCCAC
CCAGCAAAGAGAAACAGACCACCGTCGCAGCAGCAAGGAAGAAGGCGGCA
AAATCGGCCGACCAGGCTCCATTCCGCGGCACGAGCTTCGAGCACATGAA
GCTACGGCGCCTGCACCCCTGGGAAGCCGGCACTCTCCCGCCCCACGGCT
CGTACCTCCGGGTCCACTGCGACCCCCGAACGTTCCCGCTCTCGGAGAGC
ACGGACTGGAGCAGGCGAATCGTGCACGCCAACGCCGACTACGTCATTCT
CGACAAACCGGCCGGCGTCCCGACGGTGCCGACCATCGATAACGGGGTGC
AGAACTGCGTGTTTCAGGCGAGCCTGGCGGTGGCGGGCCTGCCCGCCGGG
TCGCGCTCTCTGCCGCCGCCGCTGCACGCGGTTTCCCGGCTGGATGTCTG
CACCTCGGGGATAGTGGTCTTCGCCAGGAACAAGGAGGCGGCCAAGCAGC
TGAACGAGCTGTTCCGCGAGCGGAGGGTGAAGAAGCGATACCTCGCCCTC
CTCACCCCGACCCCCGGCCCACCCGTGCTGATCGGGCCGGTGGCGCATTG
TTGCCGCTCGAAGGCATTCGACGGTTCGCGCCGCCCGAGGATCTACGCCA
ACTACGACGAGGAGCTGCTCGCGGGCGACAAGTGGGGCGGCGCCTGGCAG
GACGCGCGATCGACGGTTTTGCTGTGCGCGCCGGCGACCGGCGCCGCAGC
TGCCGCAGCGGTGGCCGCCGATCGGGCGGAGATGGAGGCGGCGGCGACAG
CCCTGGAAGAATCCGCGGCGGGCGTTGCAACGAGGCTGGAAGCAGAGCTG
GCGGCGGGACTGGGGCTGGGTTCCGGGGCTTCGCCGGAAGAAATGGAGCA
GGCGACACGCGGAGCGGTGTCGGGGATCGAGGATGGGGAGGAGGGGTCCT
CGGAGAATAAGACATTTGATGCGGAAGCAGCGGCTGTGCCAGGAGCGGGA
GCGGAGGGCGGAGAAGACAACCACGTCCCGCACCTCTGCGCCATGGAGCT
GGAGACGGGCCGGACCCATCAGCTGCGGCTGCAGTTGGCGGCGATGGGAG
CGGCAATAGTGGGTGAAAAGCGCTACCGCGGCGTTGTGGGCCGGGTGCAC
CGCGGCTTGCGCGAGGACGACGACACGTCCGGATTTGGCGAAGAGCCGGA
GGAGATCGCATTGCAGGCGGCGCGGATAGAGTTCGAGTGGGGAGGCAGCA
CGGTCGTCTACTCTGCCGCCAGGCCTTCGTGGGCGCTTTCGGACGAAAAT
GCATCGCAGTGA
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