mRNA_L-elsbetiae_contig1912.5645.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1912.5645.1
Unique NamemRNA_L-elsbetiae_contig1912.5645.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1912.5645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1912contigL-elsbetiae_contig1912:16857..19643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_001820.1
Exons5
Model size453
Cds size453
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1912.5645.1prot_L-elsbetiae_contig1912.5645.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1912 16857..19643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.1224015-CDS-L-elsbetiae_contig1912:16856..169261622815795.1224015-CDS-L-elsbetiae_contig1912:16856..16926Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1912 16857..16926 +
1691683107.672171-CDS-L-elsbetiae_contig1912:16856..169261691683107.672171-CDS-L-elsbetiae_contig1912:16856..16926Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1912 16857..16926 +
1622815795.1363952-CDS-L-elsbetiae_contig1912:17285..174181622815795.1363952-CDS-L-elsbetiae_contig1912:17285..17418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1912 17286..17418 +
1691683107.680972-CDS-L-elsbetiae_contig1912:17285..174181691683107.680972-CDS-L-elsbetiae_contig1912:17285..17418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1912 17286..17418 +
1622815795.1492543-CDS-L-elsbetiae_contig1912:17729..178281622815795.1492543-CDS-L-elsbetiae_contig1912:17729..17828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1912 17730..17828 +
1691683107.6894774-CDS-L-elsbetiae_contig1912:17729..178281691683107.6894774-CDS-L-elsbetiae_contig1912:17729..17828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1912 17730..17828 +
1622815795.1603992-CDS-L-elsbetiae_contig1912:18444..185381622815795.1603992-CDS-L-elsbetiae_contig1912:18444..18538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1912 18445..18538 +
1691683107.7026136-CDS-L-elsbetiae_contig1912:18444..185381691683107.7026136-CDS-L-elsbetiae_contig1912:18444..18538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1912 18445..18538 +
1622815795.1737452-CDS-L-elsbetiae_contig1912:19586..196431622815795.1737452-CDS-L-elsbetiae_contig1912:19586..19643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1912 19587..19643 +
1691683107.715181-CDS-L-elsbetiae_contig1912:19586..196431691683107.715181-CDS-L-elsbetiae_contig1912:19586..19643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1912 19587..19643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1912.5645.1

>prot_L-elsbetiae_contig1912.5645.1 ID=prot_L-elsbetiae_contig1912.5645.1|Name=mRNA_L-elsbetiae_contig1912.5645.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
RVSTASPTLFNESLWGHLHLVRFGLPNIACLKGLPFARASRLQLQSDFPI
HHTRLLAIRYQHGRIRSMLASEGSCCPRLIFAAEALTREDQHLREEERAI
RLQRANSRRKQHTIRTSLLRDMAVAKRASTNESMAMVGMRSAVERHSYAP
G
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mRNA from alignment at L-elsbetiae_contig1912:16857..19643+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1912.5645.1 ID=mRNA_L-elsbetiae_contig1912.5645.1|Name=mRNA_L-elsbetiae_contig1912.5645.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2787bp|location=Sequence derived from alignment at L-elsbetiae_contig1912:16857..19643+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGTGTCTACAGCTTCTCCAACCCTATTCAACGAGAGTTTGTGGGGGCA
CCTACATCTAGTTCGCTTCGGTGAGACGATTCTAACGCGCGAGCCACAAG
CGCCCCCATGTTCCGGACATTTTTTGGCATTGTAATGTACATACGAGGCT
ACGCAGGGGATCCACAACTGGGACAGGAGAGTGCAAAGACGGTGCACATT
ACCAGAGTACCACGATTCCTTAAACGTGCCAACAGTAAGAGCAAACCTGG
GGGAAACATCACAGGACCATACGTATATGTACCACGCAGTGCTCTCAAAT
AGATAGGTTCGGTCTGCGACGTGTTCCATTCCAGGTGCAAAAGGTATTGA
TTGACGCTCATGAACAAATGAGGTGCTGCTTGTCTTCACGTCAAACGGCA
CACGACTGCTCTTTTCACCATCTCCGCAGGTCTGCCAAATATCGCCTGTC
TCAAGGGCCTTCCCTTTGCTCGCGCATCTAGACTTCAGCTTCAAAGTGAC
TTCCCGATACACCATACGAGATTGCTGGCTATTCGGTACCAGCATGGGCG
CATCCGTTCCATGTAAGGGTCACCTTTGCGAACACCAGCGGGTCAAACTT
GCTTGGTGTTGAGTCTTGCCGTACACACGCCACGGACGGGGCGCCAGGCG
ATCATTGACCCTATAAATCGCCCCAAGTTACAAATTTCTCGGCATGCCCA
CCCTTATCATGATTCTCGCTTTCTGTTTGTAGAGCTCTTTCACGTACACG
GGGAAACGTCTTGCGAATACAAGGTACATGGATCTGGGTGGTGTTCGTAA
GGCCTACTGTAACTTTCTTCGCTGCCGGCTCTTGATCGTTGCTGGCGCGC
CTATTGACTCCTGTGTCAACAAGGCTTGCGTCGGAAGGTAGCTGCTGCCC
TCGGTTGATATTCGCGGCCGAAGCTCTAACTCGGGAGGACCAACATCTGC
GGGAGGAGGAACGAGCAATTCGGTGAGAAGCGTTATGGCAGACCTGATCT
ATCTTGTTGCCGGCGGAGTTTCCGAAGTGAAATTTTGGTGCTATTCGTTG
CTGTGTATTTCCCGTGTGGTCAATAAACACAATATAAACCATTTGACTGC
ATAGGGCCTTAATAAACACAAGCAGCAACTGTTTGTAAAAACATAAACAT
CTCCAGGTATTCATTTCCATGCTCTTCGCTGAGCTCTGGTGGCCGTGCCA
GTTGCTGCTCCTCTCTTTCCCCCGAGACTCGGCTCTTACCTCAGCACAAT
AATCGATGCGGTTGGGTCTGGTGTAATTTGTTGTTGGATAAGCATGCCCC
GAAAGTCCCACAAGCGTGACTGCATTGTTTCCCAGAGGTAGGAGCATAAC
CGCTGCGACCATGCATACTAGCGCCTTGGAAGTAGTTCAGGGCACTGCTG
CGCAAAATGGGTGGGTGGATGTTTCCACATGCAACCTTAAATTTCACACC
TCTTGCTCTGCCAGGACGCAATTGTTTTGTACACCCACCTCCTCCCCCCT
CTAAGGTCGTTCCACCCCCCCAAGACGCCTGTCTGTGCTAACGTCTGCGG
AACGATGGACGACGCGCTTGGCTATTGACTGAAAACAGATTGCAGAGGGC
TAATAGTCGTCGAAAGCAGCACACCATCCGCACTTCCCTACTTCGAGACA
TGGCGGTCGCGAAGAGAGCCAGCACAAACGAGGTATTGTATTGCACGACC
TACCATATAGTTGCTTGCTCACACCTTGGGGCTAAGTGGCAGTTCATAAC
CTTACCCGGTGGGGGCCAGTGCTCTTACCTCTTGTCGGCAGCCTTTCATC
AACACGCGTTAGGGTGAAACAGTCGTCGTAATAATAAAATGGGGGCGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGCGGTGCACAGGTGCG
GAGGGGATGAAGAGAGAGGCAAGATGAACTGTAACATCGGACCCGGTACA
TAACGCATTACGCGTTGCCTGTTGCGTTTCCTTGTGGACCGTGGAATTGC
TGTCGTACAAAATTGATCGTTCAGATGTAAAATGTTCTTGGATGGCCAAG
TGAATTTTCGCGTATGCCTCGAAGTGTTCCCTGTATACACCCCCCGAGTG
GCGGATGTTTCTGGGAGCAGACGATAGGTTTTGGTTCTTTCGGGGCTATG
TAGGCACTGAAAGGCGATCTTGAGATAATATATAATGGGAAATGGGACGA
ATTGTTTTCGCAAAGGGTCCGATAAGTCAGTGGCTTGGCACCCCGAAGAC
GCACCCCTACCCACCGGACAGTACTGCAGCTGCGAGGCTACCAGGGAGCC
CCCTACGCCTAGGGCCCCTCTCTTTCGGCAGGACTGCGAACTAACAATAG
GGTTGGTCGAAATCCCCAGAGAGAGTGCCGCAGCGATTTTTCTGTGCTCT
CCTCGGGGGTGCTGACTTGAGACAATTGTTAACATCGACAATTTCAACGC
TAGACTAACCCAGTGAATGGTGGGAGATCTTACACGGCCAAGTGTAGGCC
GAGACGAACAAAACATTTGTTTGTACGAATTATCAGCGCCGGGAAGCGTT
GACAGTGTATACTTAGTGGCACCTGAAGTACCTGGGCTCGTGTCACCATC
GAAAGCACGGTCGGTTGTTGTGGAGCGACTCGCGTGGGTAGATGAAATAC
GATGCACAATGGTAGCTCTGCTTCTCGCGGTATTGCCCTGACCTATTTCT
TTACCTCTTCGACCATTCCGAACGTTCCAGAGCATGGCGATGGTTGGCAT
GAGATCTGCGGTCGAGCGGCACTCGTATGCACCCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1912:16857..19643+

>mRNA_L-elsbetiae_contig1912.5645.1 ID=mRNA_L-elsbetiae_contig1912.5645.1|Name=mRNA_L-elsbetiae_contig1912.5645.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig1912:16857..19643+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGTGTCTACAGCTTCTCCAACCCTATTCAACGAGAGTTTGTGGGGGCA
CCTACATCTAGTTCGCTTCGAGGGTGTCTACAGCTTCTCCAACCCTATTC
AACGAGAGTTTGTGGGGGCACCTACATCTAGTTCGCTTCGGTCTGCCAAA
TATCGCCTGTCTCAAGGGCCTTCCCTTTGCTCGCGCATCTAGACTTCAGC
TTCAAAGTGACTTCCCGATACACCATACGAGATTGCTGGCTATTCGGTAC
CAGCATGGGCGCATCCGTTCCATGTCTGCCAAATATCGCCTGTCTCAAGG
GCCTTCCCTTTGCTCGCGCATCTAGACTTCAGCTTCAAAGTGACTTCCCG
ATACACCATACGAGATTGCTGGCTATTCGGTACCAGCATGGGCGCATCCG
TTCCATGCTTGCGTCGGAAGGTAGCTGCTGCCCTCGGTTGATATTCGCGG
CCGAAGCTCTAACTCGGGAGGACCAACATCTGCGGGAGGAGGAACGAGCA
ATTCGGCTTGCGTCGGAAGGTAGCTGCTGCCCTCGGTTGATATTCGCGGC
CGAAGCTCTAACTCGGGAGGACCAACATCTGCGGGAGGAGGAACGAGCAA
TTCGATTGCAGAGGGCTAATAGTCGTCGAAAGCAGCACACCATCCGCACT
TCCCTACTTCGAGACATGGCGGTCGCGAAGAGAGCCAGCACAAACGAGAT
TGCAGAGGGCTAATAGTCGTCGAAAGCAGCACACCATCCGCACTTCCCTA
CTTCGAGACATGGCGGTCGCGAAGAGAGCCAGCACAAACGAGAGCATGGC
GATGGTTGGCATGAGATCTGCGGTCGAGCGGCACTCGTATGCACCCGGCA
GCATGGCGATGGTTGGCATGAGATCTGCGGTCGAGCGGCACTCGTATGCA
CCCGGC
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