mRNA_L-elsbetiae_contig1911.5637.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1911.5637.1
Unique NamemRNA_L-elsbetiae_contig1911.5637.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1911.5637.1 vs. uniprot
Match: D7FWE2_ECTSI (WD40 repeat protein flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWE2_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 6.190e-38
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 1 
Query:    1 RIRRRAEICSYFDRHDEAENMLREIDRRDLTISLRERLGDWFRVVQLMKQGGGDDEQLCAAWGQVGAYYTE 213
            RIRRRAE+ SYFDRHDEAENMLREIDRRDLTISLRERLGDWFRVVQLMKQGGGDDEQLCAAWG++GAYYTE
Sbjct:  823 RIRRRAEVYSYFDRHDEAENMLREIDRRDLTISLRERLGDWFRVVQLMKQGGGDDEQLCAAWGKIGAYYTE 893
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BLAST of mRNA_L-elsbetiae_contig1911.5637.1 vs. uniprot
Match: A0A6H5L041_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L041_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 2.150e-37
Identity = 66/71 (92.96%), Postives = 69/71 (97.18%), Query Frame = 1 
Query:    1 RIRRRAEICSYFDRHDEAENMLREIDRRDLTISLRERLGDWFRVVQLMKQGGGDDEQLCAAWGQVGAYYTE 213
            RIRRRAE+ SYFDRHDEAENMLREIDRRDLTISLRERLGDWFRVVQLMKQGGGDDEQLC AWG++GAYYTE
Sbjct:  690 RIRRRAEVYSYFDRHDEAENMLREIDRRDLTISLRERLGDWFRVVQLMKQGGGDDEQLCTAWGKIGAYYTE 760
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BLAST of mRNA_L-elsbetiae_contig1911.5637.1 vs. uniprot
Match: A0A835YIA3_9STRA (WD40 repeat protein flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIA3_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.870e-22
Identity = 44/72 (61.11%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    1 RIRRRAEICSYFDRHDEAENMLR-EIDRRDLTISLRERLGDWFRVVQLMKQGGGDDEQLCAAWGQVGAYYTE 213
            R+++RAE+ +YF R+DE+E + R E+DR+DL I LR+RLGDWFRVV L+KQGG DD+QL AAW ++G YY+E
Sbjct:  779 RVKQRAEVSAYFQRYDESEALYRNEMDRKDLAIDLRQRLGDWFRVVHLVKQGGADDQQLIAAWDRIGDYYSE 850
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BLAST of mRNA_L-elsbetiae_contig1911.5637.1 vs. uniprot
Match: A0A024URH8_9STRA (ANAPC4_WD40 domain-containing protein n=15 Tax=Aphanomyces TaxID=100860 RepID=A0A024URH8_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.190e-20
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 RIRRRAEICSYFDRHDEAENMLREIDRRDLTISLRERLGDWFRVVQLMKQGGGDDEQLCAAWGQVGAYYTE 213
            R++++AE+ +YF R D+AE + R+IDR+DL I LR+RLGDWFRVVQL++ GGGDD  L  AW  +G YY +
Sbjct:  745 RVKQKAEVAAYFQRFDDAEALYRKIDRKDLAIELRKRLGDWFRVVQLVQSGGGDDILLNHAWNMIGEYYAD 815
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BLAST of mRNA_L-elsbetiae_contig1911.5637.1 vs. uniprot
Match: A0A2P6N7W5_9EUKA (WD repeat domain 35-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N7W5_9EUKA)

HSP 1 Score: 92.0 bits (227), Expect = 4.200e-20
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 RIRRRAEICSYFDRHDEAENMLREIDRRDLTISLRERLGDWFRVVQLMKQGGGDDEQLCAAWGQVGAYYTE 213
            +++++AE+ +YF R DEAEN+  ++DRRDL I LR RLGDWFRVVQL++ GGGDD  L  AW ++G YY +
Sbjct:  737 KMKQKAEVAAYFKRFDEAENLYVDMDRRDLAIELRMRLGDWFRVVQLLQNGGGDDALLNRAWNEIGDYYAD 807
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BLAST of mRNA_L-elsbetiae_contig1911.5637.1 vs. uniprot
Match: A0A1V9ZMU6_9STRA (WD repeat protein 35 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZMU6_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.720e-20
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:    1 RIRRRAEICSYFDRHDEAENMLREIDRRDLTISLRERLGDWFRVVQLMKQGGGDDEQLCAAWGQVGAYYTE 213
            R +++AEI +YF R D+AE + R+IDR+DL I LR+RLGDWFRVVQL++ GGGDD  L  AW  +G YY +
Sbjct:  738 RTKQKAEIAAYFQRFDDAEALYRKIDRKDLAIDLRKRLGDWFRVVQLVQSGGGDDTLLMQAWTMIGDYYAD 808
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BLAST of mRNA_L-elsbetiae_contig1911.5637.1 vs. uniprot
Match: A0A6G0XFS0_9STRA (ANAPC4_WD40 domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0XFS0_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.720e-20
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 RIRRRAEICSYFDRHDEAENMLREIDRRDLTISLRERLGDWFRVVQLMKQGGGDDEQLCAAWGQVGAYYTE 213
            R++++AE+ +YF R D+AE + R+IDR+DL I LR+RLGDWFRVVQL++ GGGDD  L  +W  +G YY +
Sbjct:  752 RVKQKAEVAAYFQRFDDAEALYRKIDRKDLAIELRKRLGDWFRVVQLVQSGGGDDTLLNHSWNMIGEYYAD 822
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BLAST of mRNA_L-elsbetiae_contig1911.5637.1 vs. uniprot
Match: A0A2P4XSP1_9STRA (WD repeat protein 35 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XSP1_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 6.580e-20
Identity = 38/71 (53.52%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 RIRRRAEICSYFDRHDEAENMLREIDRRDLTISLRERLGDWFRVVQLMKQGGGDDEQLCAAWGQVGAYYTE 213
            R++++AE+ +YF   DEAE + R+IDR+DL I LR+RLGDWFRVVQL++ GGG+D+ L  AW  +G Y+++
Sbjct:   27 RVKQKAEVAAYFQNFDEAEALYRKIDRKDLAIDLRQRLGDWFRVVQLVQSGGGNDDLLTHAWNMIGEYFSD 97
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BLAST of mRNA_L-elsbetiae_contig1911.5637.1 vs. uniprot
Match: A0A0W8D0M6_PHYNI (Voltage-gated potassium channel subunit beta n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D0M6_PHYNI)

HSP 1 Score: 91.3 bits (225), Expect = 7.770e-20
Identity = 38/71 (53.52%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 RIRRRAEICSYFDRHDEAENMLREIDRRDLTISLRERLGDWFRVVQLMKQGGGDDEQLCAAWGQVGAYYTE 213
            R++++AE+ +YF   DEAE + R+IDR+DL I LR+RLGDWFRVVQL++ GGG+D+ L  AW  +G Y+++
Sbjct:  763 RVKQKAEVAAYFQNFDEAEALYRKIDRKDLAIDLRQRLGDWFRVVQLVQSGGGNDDLLTHAWNMIGEYFSD 833
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BLAST of mRNA_L-elsbetiae_contig1911.5637.1 vs. uniprot
Match: W2QIS0_PHYPN (ANAPC4_WD40 domain-containing protein n=12 Tax=Peronosporaceae TaxID=4777 RepID=W2QIS0_PHYPN)

HSP 1 Score: 91.3 bits (225), Expect = 7.810e-20
Identity = 38/71 (53.52%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 RIRRRAEICSYFDRHDEAENMLREIDRRDLTISLRERLGDWFRVVQLMKQGGGDDEQLCAAWGQVGAYYTE 213
            R++++AE+ +YF   DEAE + R+IDR+DL I LR+RLGDWFRVVQL++ GGG+D+ L  AW  +G Y+++
Sbjct:  763 RVKQKAEVAAYFQNFDEAEALYRKIDRKDLAIDLRQRLGDWFRVVQLVQSGGGNDDLLTHAWNMIGEYFSD 833
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1911.5637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWE2_ECTSI6.190e-3894.37WD40 repeat protein flagellar associated protein n... [more]
A0A6H5L041_9PHAE2.150e-3792.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YIA3_9STRA2.870e-2261.11WD40 repeat protein flagellar associated protein n... [more]
A0A024URH8_9STRA4.190e-2056.34ANAPC4_WD40 domain-containing protein n=15 Tax=Aph... [more]
A0A2P6N7W5_9EUKA4.200e-2056.34WD repeat domain 35-like n=1 Tax=Planoprotostelium... [more]
A0A1V9ZMU6_9STRA5.720e-2057.75WD repeat protein 35 n=1 Tax=Thraustotheca clavata... [more]
A0A6G0XFS0_9STRA5.720e-2054.93ANAPC4_WD40 domain-containing protein n=2 Tax=Apha... [more]
A0A2P4XSP1_9STRA6.580e-2053.52WD repeat protein 35 n=1 Tax=Phytophthora palmivor... [more]
A0A0W8D0M6_PHYNI7.770e-2053.52Voltage-gated potassium channel subunit beta n=1 T... [more]
W2QIS0_PHYPN7.810e-2053.52ANAPC4_WD40 domain-containing protein n=12 Tax=Per... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1911contigL-elsbetiae_contig1911:947..1897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue8.9e-17
Seed eggNOG ortholog157072.XP_008862252.1
KEGG koko:K19674
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006935,GO:0006996,GO:0007017,GO:0007018,GO:0008104,GO:0008150,GO:0008289,GO:0009605,GO:0009987,GO:0010970,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030705,GO:0030990,GO:0030991,GO:0031503,GO:0032838,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035091,GO:0035721,GO:0036064,GO:0040011,GO:0042073,GO:0042221,GO:0042330,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0046907,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060271,GO:0061512,GO:0070727,GO:0070925,GO:0071840,GO:0097014,GO:0097730,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1905515
EggNOG free text desc.cellular response to paclitaxel
EggNOG OGsKOG2041@1,KOG2041@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size216
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.49205-CDS-L-elsbetiae_contig1911:946..10841622815794.49205-CDS-L-elsbetiae_contig1911:946..1084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1911 947..1084 +
1691683107.2824616-CDS-L-elsbetiae_contig1911:946..10841691683107.2824616-CDS-L-elsbetiae_contig1911:946..1084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1911 947..1084 +
1622815794.5056698-CDS-L-elsbetiae_contig1911:1820..18951622815794.5056698-CDS-L-elsbetiae_contig1911:1820..1895Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1911 1821..1895 +
1691683107.293629-CDS-L-elsbetiae_contig1911:1820..18951691683107.293629-CDS-L-elsbetiae_contig1911:1820..1895Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1911 1821..1895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1911.5637.1prot_L-elsbetiae_contig1911.5637.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1911 947..1895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1911.5637.1

>prot_L-elsbetiae_contig1911.5637.1 ID=prot_L-elsbetiae_contig1911.5637.1|Name=mRNA_L-elsbetiae_contig1911.5637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=71bp
RIRRRAEICSYFDRHDEAENMLREIDRRDLTISLRERLGDWFRVVQLMKQ
GGGDDEQLCAAWGQVGAYYTE
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mRNA from alignment at L-elsbetiae_contig1911:947..1897+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1911.5637.1 ID=mRNA_L-elsbetiae_contig1911.5637.1|Name=mRNA_L-elsbetiae_contig1911.5637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=951bp|location=Sequence derived from alignment at L-elsbetiae_contig1911:947..1897+ (Laminarionema elsbetiae ELsaHSoW15)
AGGATACGACGACGAGCGGAGATTTGCAGCTACTTCGATCGCCACGATGA
GGCTGAGAACATGCTCCGAGAGATCGACCGGAGAGATCTTACGATCTCGT
TGAGGGAGAGGCTCGGGGATTGGTTCAGGGTCGTGCAGGTAGGTGCGGAC
AATGTCATACATATAGGTGATATATTCGTGTGTATGCACTGGCTTTGTTA
TATATATACTGAAGTAAGACCAGCCAACCGTTCGAAGTTGAAGCAACCCA
CCCACAAACATGCAGATTTTGCTTGTTCGAGACTGGCGCCTCAGTCCAAG
TGATGTTCCGCCCCCGCTTGCCCGATTGTCGACACAAGCCTTGGATAGTC
TTTTCGCCTACAGTACTGCATAAATTTCCTCTGGCGAAACCTTTGATGAC
ACTTCCCTTCGCTGGTGACGTGCACGAACCCGGCGATAGGAAGCTTACAA
ACATCCACTTGTTGGTGGCGGTGCGCGCCGACGCCCTGGTTGAAAACACG
ACACGACGAATAGCAGAAGAAACGAAATCACTCGCTGCGTACACGGGCTC
CACACAAATGTAGAAGTACCTCGTGTCAAGAGAGAGAGATCACGCCCTTC
CACTATCCTATCGTATCGCAGTGCTGTTACCTTTGTTTCTGAGCTACGAC
ATGAAAAACATTTCCTTACACAGATAGATAGATATGCCTGAAGCAAGGCA
ACTGCCTCAGGCAAATAAGCTGAACGAGAAGCTCGCGCTCTCATCGTGTC
ATCTCTGGTATAATGCTTTGATATTTACATACACATCGTGACACATAATG
TACTGCTGGACACGTCTCCTGTCCCGGCGTCCTGTACCGCGACCGTCATC
CCCAAACGTGACGCCACGAAGCAGCTGATGAAGCAGGGTGGGGGCGATGA
CGAGCAGCTCTGCGCCGCGTGGGGGCAGGTCGGCGCCTACTACACGGAGC
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1911:947..1897+

>mRNA_L-elsbetiae_contig1911.5637.1 ID=mRNA_L-elsbetiae_contig1911.5637.1|Name=mRNA_L-elsbetiae_contig1911.5637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig1911:947..1897+ (Laminarionema elsbetiae ELsaHSoW15)
AGGATACGACGACGAGCGGAGATTTGCAGCTACTTCGATCGCCACGATGA
GGCTGAGAACATGCTCCGAGAGATCGACCGGAGAGATCTTACGATCTCGT
TGAGGGAGAGGCTCGGGGATTGGTTCAGGGTCGTGCAGAGGATACGACGA
CGAGCGGAGATTTGCAGCTACTTCGATCGCCACGATGAGGCTGAGAACAT
GCTCCGAGAGATCGACCGGAGAGATCTTACGATCTCGTTGAGGGAGAGGC
TCGGGGATTGGTTCAGGGTCGTGCAGCTGATGAAGCAGGGTGGGGGCGAT
GACGAGCAGCTCTGCGCCGCGTGGGGGCAGGTCGGCGCCTACTACACGGA
GCTGATGAAGCAGGGTGGGGGCGATGACGAGCAGCTCTGCGCCGCGTGGG
GGCAGGTCGGCGCCTACTACACGGAG
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