mRNA_L-elsbetiae_contig19109.5636.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19109.5636.1
Unique NamemRNA_L-elsbetiae_contig19109.5636.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19109.5636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19109contigL-elsbetiae_contig19109:1177..1809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size358
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19109.5636.1prot_L-elsbetiae_contig19109.5636.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19109 1177..1809 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.323079-CDS-L-elsbetiae_contig19109:1176..12331622815794.323079-CDS-L-elsbetiae_contig19109:1176..1233Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19109 1177..1233 +
1691683107.1886382-CDS-L-elsbetiae_contig19109:1176..12331691683107.1886382-CDS-L-elsbetiae_contig19109:1176..1233Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19109 1177..1233 +
1622815794.3368857-CDS-L-elsbetiae_contig19109:1430..14651622815794.3368857-CDS-L-elsbetiae_contig19109:1430..1465Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19109 1431..1465 +
1691683107.198066-CDS-L-elsbetiae_contig19109:1430..14651691683107.198066-CDS-L-elsbetiae_contig19109:1430..1465Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19109 1431..1465 +
1622815794.3472645-CDS-L-elsbetiae_contig19109:1531..17041622815794.3472645-CDS-L-elsbetiae_contig19109:1531..1704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19109 1532..1704 +
1691683107.2072775-CDS-L-elsbetiae_contig19109:1531..17041691683107.2072775-CDS-L-elsbetiae_contig19109:1531..1704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19109 1532..1704 +
1622815794.3588042-CDS-L-elsbetiae_contig19109:1717..18091622815794.3588042-CDS-L-elsbetiae_contig19109:1717..1809Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19109 1718..1809 +
1691683107.2188866-CDS-L-elsbetiae_contig19109:1717..18091691683107.2188866-CDS-L-elsbetiae_contig19109:1717..1809Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19109 1718..1809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19109.5636.1

>prot_L-elsbetiae_contig19109.5636.1 ID=prot_L-elsbetiae_contig19109.5636.1|Name=mRNA_L-elsbetiae_contig19109.5636.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
PIHFEQVLSQPWTRSNRLEAQRTSRRQPLKDGIGKCSSWFTAAEVGGAVA
EAGGHGITTGPTTSAVAAAVRGRPKRRERAGGGGGGGGATPTAGARAACV
SRWVGPRRDTGRGPAGGGG
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mRNA from alignment at L-elsbetiae_contig19109:1177..1809+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19109.5636.1 ID=mRNA_L-elsbetiae_contig19109.5636.1|Name=mRNA_L-elsbetiae_contig19109.5636.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=633bp|location=Sequence derived from alignment at L-elsbetiae_contig19109:1177..1809+ (Laminarionema elsbetiae ELsaHSoW15)
CCGATACATTTTGAACAAGTACTTTCACAGCCTTGGACGAGAAGCAATCG
CCTAGAGGTGCGTTTTGGCTCCCACAACTGCTGGTGTCGATGATGTATCG
TTCATTTTAGCAGACAAATGTTGCTGACTTCGCCGTTCTCTTCTAAGATA
GGGTTTCTGGTATGTGCTTCTGCTTCTTGTTCGGGCCATCTTTGAAACTG
AAATTTCCACCTGTCCCCACTTCCACACATTTTTTGTTCCTCAACGACAA
GCAGGCGCAAAGAACGTCGAGACGACAGCCGCTGAAGGAGTGCATCAGGG
ACGGCAGCAGCAACGGGGAGCAGCGGGCTGGCGCGCAGCAGCACCTGAGA
TCAAGCGGCATCGGGAAGTGCTCGTCGTGGTTTACGGCCGCTGAGGTCGG
CGGGGCGGTCGCCGAGGCGGGGGGGCACGGGATCACGACGGGGCCCACAA
CATCGGCGGTGGCAGCGGCGGTCCGCGGCCGTCCGAAAAGACGAGAGAGA
GCTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCAGCCACCCCCA
CGGCGGGAGCAAGGGCGGCATGTGTTTCCAGATGGGTCGGGCCTCGCCGC
GACACCGGGAGGGGACCGGCGGGCGGCGGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19109:1177..1809+

>mRNA_L-elsbetiae_contig19109.5636.1 ID=mRNA_L-elsbetiae_contig19109.5636.1|Name=mRNA_L-elsbetiae_contig19109.5636.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig19109:1177..1809+ (Laminarionema elsbetiae ELsaHSoW15)
CCGATACATTTTGAACAAGTACTTTCACAGCCTTGGACGAGAAGCAATCG
CCTAGAGCCGATACATTTTGAACAAGTACTTTCACAGCCTTGGACGAGAA
GCAATCGCCTAGAGGCGCAAAGAACGTCGAGACGACAGCCGCTGAAGGAG
CGCAAAGAACGTCGAGACGACAGCCGCTGAAGGACGGCATCGGGAAGTGC
TCGTCGTGGTTTACGGCCGCTGAGGTCGGCGGGGCGGTCGCCGAGGCGGG
GGGGCACGGGATCACGACGGGGCCCACAACATCGGCGGTGGCAGCGGCGG
TCCGCGGCCGTCCGAAAAGACGAGAGAGAGCTGGCGGCGGCGGCGGCGGC
GGCGGCGCGGCATCGGGAAGTGCTCGTCGTGGTTTACGGCCGCTGAGGTC
GGCGGGGCGGTCGCCGAGGCGGGGGGGCACGGGATCACGACGGGGCCCAC
AACATCGGCGGTGGCAGCGGCGGTCCGCGGCCGTCCGAAAAGACGAGAGA
GAGCTGGCGGCGGCGGCGGCGGCGGCGGCGCCACCCCCACGGCGGGAGCA
AGGGCGGCATGTGTTTCCAGATGGGTCGGGCCTCGCCGCGACACCGGGAG
GGGACCGGCGGGCGGCGGCGGGCCACCCCCACGGCGGGAGCAAGGGCGGC
ATGTGTTTCCAGATGGGTCGGGCCTCGCCGCGACACCGGGAGGGGACCGG
CGGGCGGCGGCGGG
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