mRNA_L-elsbetiae_contig191.5629.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig191.5629.1
Unique NamemRNA_L-elsbetiae_contig191.5629.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig191.5629.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 7.210e-44
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = -3 
Query:  267 GHVLMVLAIVVEVVGICYGSRGERVAKGTAVLSERPRAGSDDGVTGFESVPASWTSSFRRQGSVSEKPGPNRIVAGEVVTVERP 518
            GHVLMVLAIVVEVVGICYGSRGERVAKGTAVLSERPRAGSDDGVTGFESVPASWTSSFRRQGSVSEKPGPNRIVAGEVVTVERP
Sbjct: 1004 GHVLMVLAIVVEVVGICYGSRGERVAKGTAVLSERPRAGSDDGVTGFESVPASWTSSFRRQGSVSEKPGPNRIVAGEVVTVERP 1087
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BLAST of mRNA_L-elsbetiae_contig191.5629.1 vs. uniprot
Match: D7G1E0_ECTSI (EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E0_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.180e-15
Identity = 54/89 (60.67%), Postives = 61/89 (68.54%), Query Frame = -3 
Query:  270 GHVLMVLAIVVEVVGICYGSRGERVAKGTAVLSE-----RPRAGSDDGVTGFESVPASWTSSFRRQGSVSEKPGPNRIVAG-EVVTVER 518
            GHVLM+L I+VEVVG+CY S  +RV  G A   E     RPRAGSDD V  FESVPASW S F RQ SVSE+PGP R +AG  VV + R
Sbjct: 1277 GHVLMILVIIVEVVGMCYASGKKRVV-GAASSPESSPGLRPRAGSDD-VPAFESVPASWPS-FMRQSSVSEEPGPTRRIAGIMVVNIHR 1362
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BLAST of mRNA_L-elsbetiae_contig191.5629.1 vs. uniprot
Match: A0A6H5K0D5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0D5_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.060e-15
Identity = 51/88 (57.95%), Postives = 59/88 (67.05%), Query Frame = -3 
Query:  270 GHVLMVLAIVVEVVGICYGSRGERVAKGTAVLSER-----PRAGSDDGVTGFESVPASWTSSFRRQGSVSEKPGPNRIVAGEVVTVER 518
            GHVLM+LAI+VEVVG+C  S  +RV  G A  +E      PRAGSDD V  FES PASW  S R + SVSE+PGP R VAG V+ V R
Sbjct:  211 GHVLMILAIIVEVVGVCCASGTKRVV-GAAASTENVPGLTPRAGSDD-VLAFESAPASWPPSMRER-SVSEEPGPTRRVAGTVIAVGR 295
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BLAST of mRNA_L-elsbetiae_contig191.5629.1 vs. uniprot
Match: A0A6H5L4F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4F7_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.860e-15
Identity = 51/84 (60.71%), Postives = 56/84 (66.67%), Query Frame = -3 
Query:  267 GHVLMVLAIVVEVVGICYGSRGERVAKGTAVLSERPRAGSDDGVTGFESVPASWTSSFRRQGSVSEKPGPNRIVAGEVVTVERP 518
            GHVLM+LAIVVEV  +CY SR +RVA+G    SERPR GSDD V   ES PA W S F R  SVSEK G  R V+G VVT   P
Sbjct:  899 GHVLMILAIVVEVAALCYASRRKRVAEGEEA-SERPRVGSDD-VPALESAPAPWRS-FLRLRSVSEKTGSTRSVSGTVVTTGGP 979
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BLAST of mRNA_L-elsbetiae_contig191.5629.1 vs. uniprot
Match: A0A6H5J7J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J9_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.940e-13
Identity = 51/86 (59.30%), Postives = 58/86 (67.44%), Query Frame = -3 
Query:  276 GHVLMVLAIVVEVVGICYGSRGERVAKGTAVLSE-----RPRAGSDDGVTGFESVPASWTSSFRRQGSVSEKPGPNRIVAGEVVTV 518
            GHVL++LAIVVEVVGIC  S G++     AV SE     RPR GSDD V  FES PASW + F  Q SVSEKPGP R  +G VVT+
Sbjct: 1017 GHVLLILAIVVEVVGICLAS-GKKRGVEEAVPSEGLPVLRPRGGSDD-VPVFESAPASWKT-FVGQASVSEKPGPRRSASGAVVTM 1099
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BLAST of mRNA_L-elsbetiae_contig191.5629.1 vs. uniprot
Match: D7G3S0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S0_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.940e-12
Identity = 49/74 (66.22%), Postives = 52/74 (70.27%), Query Frame = -3 
Query:  312 GHVLMVLAIVVEVVGICYGSRGERVAKGTAVLSE-----RPRAGSDDGVTGFESVPASWTSSFRRQGSVSEKPG 518
            GHVLM+L IVVEVVGICY S  +RV  G A  SE     RPRAGSDD V   ESVPASW S F RQGSVSE+ G
Sbjct: 1602 GHVLMILVIVVEVVGICYASGKKRVV-GAASSSESSPGLRPRAGSDD-VPALESVPASWAS-FMRQGSVSEEQG 1672
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BLAST of mRNA_L-elsbetiae_contig191.5629.1 vs. uniprot
Match: A0A6H5LAD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAD4_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 9.150e-5
Identity = 35/56 (62.50%), Postives = 37/56 (66.07%), Query Frame = -3 
Query:  366 GHVLMVLAIVVEVVGICYGSRGERVAKGTAVLSE-----RPRAGSDDGVTGFESVP 518
            GHVLM+L IVVEVVGICY S  +RV  G A  SE     RPR GSDD    FESVP
Sbjct:  691 GHVLMILVIVVEVVGICYASGMKRVV-GAASSSESSPGLRPRPGSDD--PAFESVP 743
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig191.5629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KX12_9PHAE7.210e-44100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1E0_ECTSI1.180e-1560.67EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5K0D5_9PHAE2.060e-1557.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4F7_9PHAE2.860e-1560.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7J9_9PHAE2.940e-1359.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3S0_ECTSI1.940e-1266.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LAD4_9PHAE9.150e-562.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig191contigL-elsbetiae_contig191:42736..43255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size521
Cds size468
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.6093464-CDS-L-elsbetiae_contig191:42735..432031622815793.6093464-CDS-L-elsbetiae_contig191:42735..43203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig191 42736..43203 +
1691683106.7181664-CDS-L-elsbetiae_contig191:42735..432031691683106.7181664-CDS-L-elsbetiae_contig191:42735..43203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig191 42736..43203 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.6213295-UTR-L-elsbetiae_contig191:43203..432551622815793.6213295-UTR-L-elsbetiae_contig191:43203..43255Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig191 43204..43255 +
1691683106.7291155-UTR-L-elsbetiae_contig191:43203..432551691683106.7291155-UTR-L-elsbetiae_contig191:43203..43255Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig191 43204..43255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig191.5629.1prot_L-elsbetiae_contig191.5629.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig191 42736..43203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig191.5629.1

>prot_L-elsbetiae_contig191.5629.1 ID=prot_L-elsbetiae_contig191.5629.1|Name=mRNA_L-elsbetiae_contig191.5629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp
RRHYIVVEARRTDAAETRRAYSPAIYCFEYHKQTLKENLSPQLLFFPLQT
AKPLLFRLATHSTYNNCQARENITRIPTPIKKAKLQLFYGLSTVTTSPAT
ILFGPGFSDTDPCRLKDDVHDAGTLSNPVTPSSDPARGLSDNTAVPLATR
SPLDP*
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mRNA from alignment at L-elsbetiae_contig191:42736..43255+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig191.5629.1 ID=mRNA_L-elsbetiae_contig191.5629.1|Name=mRNA_L-elsbetiae_contig191.5629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=520bp|location=Sequence derived from alignment at L-elsbetiae_contig191:42736..43255+ (Laminarionema elsbetiae ELsaHSoW15)
CGCAGACACTACATAGTTGTGGAGGCAAGGCGCACCGACGCAGCAGAAAC
GAGACGTGCTTACTCACCAGCAATATATTGCTTTGAATATCACAAACAAA
CGCTAAAAGAAAATCTTTCGCCGCAACTGCTCTTCTTCCCGTTGCAAACC
GCGAAGCCACTGTTGTTCCGGCTTGCGACACACAGTACATACAACAACTG
TCAAGCCAGAGAGAACATAACAAGAATACCCACACCAATAAAAAAGGCAA
AGTTGCAGCTCTTCTACGGCCTTTCCACCGTGACTACCTCCCCGGCGACG
ATTCTGTTCGGTCCGGGCTTTTCTGACACCGACCCTTGTCGCCTAAAGGA
CGACGTCCACGATGCAGGAACGCTTTCAAATCCAGTCACACCATCATCTG
ATCCTGCGCGCGGCCTCTCGGACAACACCGCCGTACCTTTGGCAACTCGC
TCCCCCCTGGACCCGTAGCAGATGCCAACCACCTCGACAACGATGGCGAG
AACCATCAGCACGTGACCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig191:42736..43255+

>mRNA_L-elsbetiae_contig191.5629.1 ID=mRNA_L-elsbetiae_contig191.5629.1|Name=mRNA_L-elsbetiae_contig191.5629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig191:42736..43255+ (Laminarionema elsbetiae ELsaHSoW15)
CGCAGACACTACATAGTTGTGGAGGCAAGGCGCACCGACGCAGCAGAAAC
GAGACGTGCTTACTCACCAGCAATATATTGCTTTGAATATCACAAACAAA
CGCTAAAAGAAAATCTTTCGCCGCAACTGCTCTTCTTCCCGTTGCAAACC
GCGAAGCCACTGTTGTTCCGGCTTGCGACACACAGTACATACAACAACTG
TCAAGCCAGAGAGAACATAACAAGAATACCCACACCAATAAAAAAGGCAA
AGTTGCAGCTCTTCTACGGCCTTTCCACCGTGACTACCTCCCCGGCGACG
ATTCTGTTCGGTCCGGGCTTTTCTGACACCGACCCTTGTCGCCTAAAGGA
CGACGTCCACGATGCAGGAACGCTTTCAAATCCAGTCACACCATCATCTG
ATCCTGCGCGCGGCCTCTCGGACAACACCGCCGTACCTTTGGCAACTCGC
TCCCCCCTGGACCCGTAGCGCAGACACTACATAGTTGTGGAGGCAAGGCG
CACCGACGCAGCAGAAACGAGACGTGCTTACTCACCAGCAATATATTGCT
TTGAATATCACAAACAAACGCTAAAAGAAAATCTTTCGCCGCAACTGCTC
TTCTTCCCGTTGCAAACCGCGAAGCCACTGTTGTTCCGGCTTGCGACACA
CAGTACATACAACAACTGTCAAGCCAGAGAGAACATAACAAGAATACCCA
CACCAATAAAAAAGGCAAAGTTGCAGCTCTTCTACGGCCTTTCCACCGTG
ACTACCTCCCCGGCGACGATTCTGTTCGGTCCGGGCTTTTCTGACACCGA
CCCTTGTCGCCTAAAGGACGACGTCCACGATGCAGGAACGCTTTCAAATC
CAGTCACACCATCATCTGATCCTGCGCGCGGCCTCTCGGACAACACCGCC
GTACCTTTGGCAACTCGCTCCCCCCTGGACCCGTAG
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