mRNA_L-elsbetiae_contig191.5626.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig191.5626.1
Unique NamemRNA_L-elsbetiae_contig191.5626.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig191.5626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig191contigL-elsbetiae_contig191:31632..32557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size724
Cds size723
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.5217638-CDS-L-elsbetiae_contig191:31631..320701622815793.5217638-CDS-L-elsbetiae_contig191:31631..32070Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig191 31632..32070 -
1691683106.6687362-CDS-L-elsbetiae_contig191:31631..320701691683106.6687362-CDS-L-elsbetiae_contig191:31631..32070Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig191 31632..32070 -
1622815793.5339978-CDS-L-elsbetiae_contig191:32273..325571622815793.5339978-CDS-L-elsbetiae_contig191:32273..32557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig191 32274..32557 -
1691683106.6835365-CDS-L-elsbetiae_contig191:32273..325571691683106.6835365-CDS-L-elsbetiae_contig191:32273..32557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig191 32274..32557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig191.5626.1prot_L-elsbetiae_contig191.5626.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig191 31632..32557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig191.5626.1

>prot_L-elsbetiae_contig191.5626.1 ID=prot_L-elsbetiae_contig191.5626.1|Name=mRNA_L-elsbetiae_contig191.5626.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=241bp
GYVRRRHAQRRADGTSTRVFAKPVGSWSRVWPWVSRPGGSRYGLPHAASR
RFFVFFGVRQQWRRALIGLFVWPGRPRLRTLWGGTRCIWFQSPFWFGDVG
GNAQQTVPMQTTHNRPQHDAMRMPSATAPPPPSWGPSPGLVANSAAGFAG
GVWVPMGWHGGGVAVFGGGGGVQQSGGGQHQQHGFGMTPIMGALPKLPPV
LPSFDKWTDAPLPRDDHGNGGSSGGGEKKENEVAGELSVL*
back to top

mRNA from alignment at L-elsbetiae_contig191:31632..32557-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig191.5626.1 ID=mRNA_L-elsbetiae_contig191.5626.1|Name=mRNA_L-elsbetiae_contig191.5626.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=926bp|location=Sequence derived from alignment at L-elsbetiae_contig191:31632..32557- (Laminarionema elsbetiae ELsaHSoW15)
GGGTATGTACGACGCCGCCATGCCCAACGTCGTGCCGATGGGACAAGCAC
TCGCGTCTTCGCAAAGCCAGTCGGGTCGTGGAGTCGAGTCTGGCCGTGGG
TATCCCGCCCCGGCGGCAGCCGGTACGGGCTTCCTCATGCTGCCTCCCGT
CGGTTCTTCGTCTTCTTTGGCGTACGGCAGCAGTGGCGGAGGGCACTCAT
CGGGCTCTTCGTTTGGCCCGGCCGTCCACGGCTACGGACACTCTGGGGCG
GCACCCGTTGCATTTGGTTCCAGTCCCCTTTTTGGTGAGAGCGCGATGCG
TGTAGTTTACTCCCACACTGTAATTATTGTGTGTGCCAGGTTCCGACTTT
GGCTGTGCTCGGGGAGTTTTTTCCCCCGTAACCATGAATGGTGGTTGGTA
TTGTGCGGGGTGGACAACGTCAACTCCGCGCAAGGGAAGACGCCCAAATG
CCGAACACCGCTTTTACCACTCTCACTCTATCGACAGGTTCGGCGACGTC
GGAGGAAACGCCCAACAAACCGTGCCGATGCAGACGACACACAACCGGCC
GCAGCATGACGCCATGAGGATGCCATCAGCAACGGCGCCCCCGCCACCTT
CGTGGGGACCCTCTCCCGGCTTGGTTGCCAACTCGGCCGCGGGTTTCGCC
GGGGGCGTCTGGGTCCCGATGGGGTGGCACGGCGGCGGTGTGGCCGTTTT
TGGCGGTGGAGGGGGGGTCCAGCAGAGCGGAGGAGGTCAGCATCAGCAGC
ATGGCTTCGGCATGACGCCGATCATGGGCGCGCTCCCGAAGCTCCCTCCG
GTGCTTCCATCGTTCGACAAGTGGACGGACGCGCCCTTGCCCCGCGACGA
TCACGGTAACGGCGGCAGCAGCGGGGGCGGCGAGAAGAAAGAGAACGAGG
TTGCCGGCGAACTGAGTGTCCTGTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig191:31632..32557-

>mRNA_L-elsbetiae_contig191.5626.1 ID=mRNA_L-elsbetiae_contig191.5626.1|Name=mRNA_L-elsbetiae_contig191.5626.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig191:31632..32557- (Laminarionema elsbetiae ELsaHSoW15)
GGGTATGTACGACGCCGCCATGCCCAACGTCGTGCCGATGGGACAAGCAC
TCGCGTCTTCGCAAAGCCAGTCGGGTCGTGGAGTCGAGTCTGGCCGTGGG
TATCCCGCCCCGGCGGCAGCCGGTACGGGCTTCCTCATGCTGCCTCCCGT
CGGTTCTTCGTCTTCTTTGGCGTACGGCAGCAGTGGCGGAGGGCACTCAT
CGGGCTCTTCGTTTGGCCCGGCCGTCCACGGCTACGGACACTCTGGGGCG
GCACCCGTTGCATTTGGTTCCAGTCCCCTTTTTGGGGTATGTACGACGCC
GCCATGCCCAACGTCGTGCCGATGGGACAAGCACTCGCGTCTTCGCAAAG
CCAGTCGGGTCGTGGAGTCGAGTCTGGCCGTGGGTATCCCGCCCCGGCGG
CAGCCGGTACGGGCTTCCTCATGCTGCCTCCCGTCGGTTCTTCGTCTTCT
TTGGCGTACGGCAGCAGTGGCGGAGGGCACTCATCGGGCTCTTCGTTTGG
CCCGGCCGTCCACGGCTACGGACACTCTGGGGCGGCACCCGTTGCATTTG
GTTCCAGTCCCCTTTTTGGTTCGGCGACGTCGGAGGAAACGCCCAACAAA
CCGTGCCGATGCAGACGACACACAACCGGCCGCAGCATGACGCCATGAGG
ATGCCATCAGCAACGGCGCCCCCGCCACCTTCGTGGGGACCCTCTCCCGG
CTTGGTTGCCAACTCGGCCGCGGGTTTCGCCGGGGGCGTCTGGGTCCCGA
TGGGGTGGCACGGCGGCGGTGTGGCCGTTTTTGGCGGTGGAGGGGGGGTC
CAGCAGAGCGGAGGAGGTCAGCATCAGCAGCATGGCTTCGGCATGACGCC
GATCATGGGCGCGCTCCCGAAGCTCCCTCCGGTGCTTCCATCGTTCGACA
AGTGGACGGACGCGCCCTTGCCCCGCGACGATCACGGTAACGGCGGCAGC
AGCGGGGGCGGCGAGAAGAAAGAGAACGAGGTTGCCGGCGAACTGAGTGT
CCTGTAGGTTCGGCGACGTCGGAGGAAACGCCCAACAAACCGTGCCGATG
CAGACGACACACAACCGGCCGCAGCATGACGCCATGAGGATGCCATCAGC
AACGGCGCCCCCGCCACCTTCGTGGGGACCCTCTCCCGGCTTGGTTGCCA
ACTCGGCCGCGGGTTTCGCCGGGGGCGTCTGGGTCCCGATGGGGTGGCAC
GGCGGCGGTGTGGCCGTTTTTGGCGGTGGAGGGGGGGTCCAGCAGAGCGG
AGGAGGTCAGCATCAGCAGCATGGCTTCGGCATGACGCCGATCATGGGCG
CGCTCCCGAAGCTCCCTCCGGTGCTTCCATCGTTCGACAAGTGGACGGAC
GCGCCCTTGCCCCGCGACGATCACGGTAACGGCGGCAGCAGCGGGGGCGG
CGAGAAGAAAGAGAACGAGGTTGCCGGCGAACTGAGTGTCCTGTAG
back to top