mRNA_L-elsbetiae_contig191.5624.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig191.5624.1
Unique NamemRNA_L-elsbetiae_contig191.5624.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig191.5624.1 vs. uniprot
Match: Q8QNC6_ESV1K (EsV-1-156 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC6_ESV1K)

HSP 1 Score: 158 bits (400), Expect = 7.640e-44
Identity = 97/235 (41.28%), Postives = 125/235 (53.19%), Query Frame = 1 
Query:    1 ISRGDLPTAKNPNRLYETSTSMLKASCVRGWKVTKFISEGSFGHVFRALRNDGTGAVFKAQIGSAKESKGRSRCPKEFPQ*GSCPQDTRVL*FQAKKTTEKIGTRATERPRIR**RHRVSPPGPFGPHHRDGGDC*RYR*LATPL-----------KSKEQLG*LTFNIFDLLDSFRKHKLTHADLHLWNLGYVYTDVSKKHLKLMPIDFGRSSKGKPTRSWRLAASCASLAKYF 672
            I  GD+ TAKNPNRL ET T ML  SC+RGW+VTKF+S G++GHVFRA+  +GT A  K Q G AK  +G     + F + G  P+  R   F+ K    ++G  A ER      R       PF            +  +   +           KS +QL    F I  L+ +FR H LTH DLHL N+GYVYTD SK++++LMPIDFGRS  GK   S  + A   +LA  F
Sbjct:   38 IGPGDVATAKNPNRLCETLTKMLACSCMRGWRVTKFLSAGAYGHVFRAVHTNGTSAALKVQTGDAKRLRGELSAQRAFHKRGLAPKIIRYCSFKPKT---RLGMVAHERLN----RAVQDKSVPFQTEDESPAGNLVHVIIMEEIAGVLGQWLRREKSNQQLHKTAFEITKLMVAFRNHGLTHGDLHLNNIGYVYTDASKRYMRLMPIDFGRSYVGKAFTSLEVGALMRTLAPNF 265
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig191.5624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNC6_ESV1K7.640e-4441.28EsV-1-156 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig191contigL-elsbetiae_contig191:4325..4996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size672
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig191.5624.1prot_L-elsbetiae_contig191.5624.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig191 4561..4845 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.6609774-UTR-L-elsbetiae_contig191:4324..45601622815793.6609774-UTR-L-elsbetiae_contig191:4324..4560Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig191 4325..4560 -
1691683106.737562-UTR-L-elsbetiae_contig191:4324..45601691683106.737562-UTR-L-elsbetiae_contig191:4324..4560Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig191 4325..4560 -
1622815793.6919563-UTR-L-elsbetiae_contig191:4845..49961622815793.6919563-UTR-L-elsbetiae_contig191:4845..4996Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig191 4846..4996 -
1691683106.7589693-UTR-L-elsbetiae_contig191:4845..49961691683106.7589693-UTR-L-elsbetiae_contig191:4845..4996Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig191 4846..4996 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.6783292-CDS-L-elsbetiae_contig191:4560..48451622815793.6783292-CDS-L-elsbetiae_contig191:4560..4845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig191 4561..4845 -
1691683106.7495322-CDS-L-elsbetiae_contig191:4560..48451691683106.7495322-CDS-L-elsbetiae_contig191:4560..4845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig191 4561..4845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig191.5624.1

>prot_L-elsbetiae_contig191.5624.1 ID=prot_L-elsbetiae_contig191.5624.1|Name=mRNA_L-elsbetiae_contig191.5624.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
MMAPEQYSKRRLVPRRKVKGEAVAQKNFHSKGLAPKILGYCNFKPKKRLR
KSAHERLNDLEYDDDDIEYHPRGHLVHIIVMEEIADVIGDWLHP*
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mRNA from alignment at L-elsbetiae_contig191:4325..4996-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig191.5624.1 ID=mRNA_L-elsbetiae_contig191.5624.1|Name=mRNA_L-elsbetiae_contig191.5624.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig191:4325..4996- (Laminarionema elsbetiae ELsaHSoW15)
ATTTCCCGTGGAGACCTACCCACCGCGAAAAATCCCAACAGGCTGTATGA
AACGTCGACGAGCATGCTCAAAGCTTCATGTGTCAGAGGCTGGAAGGTTA
CGAAATTCATCTCCGAGGGATCGTTCGGCCACGTCTTCCGTGCACTGAGA
AATGATGGCACCGGAGCAGTATTCAAAGCGCAGATTGGTTCCGCGAAGGA
AAGTAAAGGGCGAAGCCGTTGCCCAAAAGAATTTCCACAGTAAGGGTCTT
GCCCCCAAGATACTAGGGTACTGTAATTTCAAGCCAAAAAAACGACTGAG
AAAATCGGCACACGAGCGACTGAACGACCTCGAATACGATGATGACGACA
TAGAGTATCACCCCCGGGGCCATTTGGTCCACATCATCGTGATGGAGGAG
ATTGCTGACGTTATCGGTGACTGGCTACACCCTTAAAGTCAAAAGAACAG
CTCGGATAGCTTACGTTCAATATTTTTGATCTATTGGATTCTTTCAGAAA
GCACAAACTGACACATGCCGATCTACACTTGTGGAACTTGGGGTACGTGT
ACACCGATGTGTCGAAGAAACATCTGAAGCTGATGCCGATTGATTTTGGG
AGGTCTAGCAAAGGAAAGCCTACACGGAGTTGGAGGTTGGCTGCCTCTTG
CGCATCCTTGGCAAAATATTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig191:4325..4996-

>mRNA_L-elsbetiae_contig191.5624.1 ID=mRNA_L-elsbetiae_contig191.5624.1|Name=mRNA_L-elsbetiae_contig191.5624.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig191:4325..4996- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGCACCGGAGCAGTATTCAAAGCGCAGATTGGTTCCGCGAAGGAA
AGTAAAGGGCGAAGCCGTTGCCCAAAAGAATTTCCACAGTAAGGGTCTTG
CCCCCAAGATACTAGGGTACTGTAATTTCAAGCCAAAAAAACGACTGAGA
AAATCGGCACACGAGCGACTGAACGACCTCGAATACGATGATGACGACAT
AGAGTATCACCCCCGGGGCCATTTGGTCCACATCATCGTGATGGAGGAGA
TTGCTGACGTTATCGGTGACTGGCTACACCCTTAAATGATGGCACCGGAG
CAGTATTCAAAGCGCAGATTGGTTCCGCGAAGGAAAGTAAAGGGCGAAGC
CGTTGCCCAAAAGAATTTCCACAGTAAGGGTCTTGCCCCCAAGATACTAG
GGTACTGTAATTTCAAGCCAAAAAAACGACTGAGAAAATCGGCACACGAG
CGACTGAACGACCTCGAATACGATGATGACGACATAGAGTATCACCCCCG
GGGCCATTTGGTCCACATCATCGTGATGGAGGAGATTGCTGACGTTATCG
GTGACTGGCTACACCCTTAA
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