mRNA_L-elsbetiae_contig19088.5620.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19088.5620.1
Unique NamemRNA_L-elsbetiae_contig19088.5620.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19088.5620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19088contigL-elsbetiae_contig19088:148..2200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size548
Cds size546
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19088.5620.1prot_L-elsbetiae_contig19088.5620.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19088 148..2200 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.2252653-CDS-L-elsbetiae_contig19088:147..1781622815793.2252653-CDS-L-elsbetiae_contig19088:147..178Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19088 148..178 -
1691683106.4777997-CDS-L-elsbetiae_contig19088:147..1781691683106.4777997-CDS-L-elsbetiae_contig19088:147..178Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19088 148..178 -
1622815793.2369127-CDS-L-elsbetiae_contig19088:989..11031622815793.2369127-CDS-L-elsbetiae_contig19088:989..1103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19088 990..1103 -
1691683106.487391-CDS-L-elsbetiae_contig19088:989..11031691683106.487391-CDS-L-elsbetiae_contig19088:989..1103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19088 990..1103 -
1622815793.2476623-CDS-L-elsbetiae_contig19088:1799..22001622815793.2476623-CDS-L-elsbetiae_contig19088:1799..2200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19088 1800..2200 -
1691683106.5013673-CDS-L-elsbetiae_contig19088:1799..22001691683106.5013673-CDS-L-elsbetiae_contig19088:1799..2200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19088 1800..2200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19088.5620.1

>prot_L-elsbetiae_contig19088.5620.1 ID=prot_L-elsbetiae_contig19088.5620.1|Name=mRNA_L-elsbetiae_contig19088.5620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
PASGVAGAVTGIPPPRLTRGTVVGGGGGSGNGGRRGSRCRFKTAGADEGH
IAGRYRGGEKPPQEPEQRLCGCCRWRRAIMTMATPAPVYRGGGGGDGDAL
FGRGRGCGDGDRAIFFGRVEDGLTTLGLTVGISRSHVSHRPVSPQPKDMA
IKIRTEDCGRIDVPTGAWADCSYPATVFRCRC
back to top

mRNA from alignment at L-elsbetiae_contig19088:148..2200-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19088.5620.1 ID=mRNA_L-elsbetiae_contig19088.5620.1|Name=mRNA_L-elsbetiae_contig19088.5620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2053bp|location=Sequence derived from alignment at L-elsbetiae_contig19088:148..2200- (Laminarionema elsbetiae ELsaHSoW15)
CCCGCCAGTGGAGTGGCGGGAGCGGTGACGGGGATACCGCCGCCGAGGCT
GACCAGAGGCACCGTGGTAGGCGGCGGCGGTGGCAGCGGCAACGGTGGCC
GGCGGGGCAGCCGGTGCCGATTCAAGACTGCTGGAGCTGATGAAGGCCAC
ATCGCTGGGCGTTACCGCGGAGGAGAAAAGCCTCCTCAAGAACCAGAGCA
GCGGCTCTGCGGATGTTGTCGGTGGCGGCGGGCTATCATGACGATGGCCA
CTCCGGCGCCTGTGTATCGCGGCGGCGGCGGTGGTGATGGGGATGCGCTG
TTCGGGCGAGGGCGCGGTTGCGGCGACGGGGATAGAGCTATATTTTTCGG
GAGAGTGGAGGACGGGCTCACGACCTTGGGGCTCACTGTTGGGATCTCGA
GGTACATTCATGCGCGTTTTTGTTTGTCGAGAAGATGTCGTAGCGCATGC
GTCGGGCTTTTTGGCGTTGCCTTGCCGAATCGATGTTTGTTGGGCCAGGC
TTACACCCAGTGGTTGCGCTCATATGGGTTGTAGTGATGAGTGTTCCACG
TTGCTGCAAACGCGACGGTCAAGCAGACACCCAGCACAGCAACTGCCGTG
AAGGAGGACCGGTGCCAGGGCGTTATAGATGTTGCAATCGATTTAAGAGT
TAAGTCGTCGCTTCCCTGCACGAGCCGCTGTGAAGAGGTCTTGTAGCATG
TTGCCCTGTCATCGACATACTTGTACATAGACATCTGTATCTAAGCTGGC
CTGGCTCACGGTAGGTGGTCAGGTACCTGTGTCCCCTCTACCGTGCCCAC
CACGCGCTTGTCTCTCTCGCTATGTACATGTCCGCTCGATTGGAATGGCG
TTTTCGATTAGTCACTCAGTTGGTGCTATAGGTATCGATCTTGATCTTCA
TGTCTGCAGCGAGACTGCAACAGTGAGAGAAACTTGTTTATCTGCCCCCC
CGCCCCCCCCTCCCTCTTCTATTCCTTTCTCTCTCCCTCTCTCTCTCTCT
CTTGCCCGTCTATCTCTTATACTCTCTCGCTATTGCACACACTTACAGGC
TGTCTCTCTTTCTCCTTTGCCCCCTGTGCTCCCATCTCCCATCCTAGATC
TCACGTATCACATAGGCCAGTGTCTCCCCAGCCGAAGGACATGGCCATTA
AGATTCGCACCGAGGACTGCGGGCGCATCGACGTGCCCACCGGGGCATGG
GCAGACTGCAGGTAAGCGTAGTGTAGGGTGGGGAAGTGAAGCATGCGGCA
CTCGCTTGACGCATCTCAGATGAGGTCGATGTCGAAGGGCGATCGGTTGT
TTGCGATTGCGGTCGATGTTGAAGGGCTCATCTCACCCGCAAGCCGCCCG
TGTGTCAGCATTTGGCGTTGCTCTGTTGCTCCTGTAACCCTCCCTCTGCT
TGCGGGGCCCGCCACAGCACAGCCCAGCACAGAACCGCTTGTCACACCGA
TATTGTATTGGCTCAGCAATGGTCTACGGTACCTCCCAGTGGCTACTTGG
TCGGTGCTTTAACCCTCCCATCTCGATGAATGCACCCCGCTGATATCCCT
GCCTCATCTCTGTCGTCGCACCGTAAGAAACGACATCAATGACATGCTAT
TGCTTTGCAACGACAGGCCTGAAAAAGTGTGGTACAGCAGTAGGTTTGTT
TTGATGCTCGAGTACGCGTTGTTGGTTGTTCGGCACGAGTTTTTACTGTC
TACGGAGTTTGTTGGCGGAGTTTCCTGGCAGCCTTAGAGGACCCCGCCTT
TCCAATTCAGCGGGCGCTGTTGAAAAACCTCTGTCCGAGGGTTTTGTCTA
CCGCTTTGCAGTAGACAGTACTTCTGTGTTCTTCAAAACAATATTTTTTA
TCGCGCCCCCGCCGCTACCCCGGGCCCTTTCGATCGCAGAACGAACACTC
TAGACCGCGATGGTTGTAGAAAATAACCTCCTTTGACCGGTCTTGATCAT
TCGGTTTCTTGTTGAGCCAGCACCTCCCGCTGTCGTTTCTTGCCGCTTGC
TTGCCTTCGCCGTGTAAGCTAGCTACCCTGCTACCGTCTTTCGGTGCCGC
TGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig19088:148..2200-

>mRNA_L-elsbetiae_contig19088.5620.1 ID=mRNA_L-elsbetiae_contig19088.5620.1|Name=mRNA_L-elsbetiae_contig19088.5620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig19088:148..2200- (Laminarionema elsbetiae ELsaHSoW15)
CCCGCCAGTGGAGTGGCGGGAGCGGTGACGGGGATACCGCCGCCGAGGCT
GACCAGAGGCACCGTGGTAGGCGGCGGCGGTGGCAGCGGCAACGGTGGCC
GGCGGGGCAGCCGGTGCCGATTCAAGACTGCTGGAGCTGATGAAGGCCAC
ATCGCTGGGCGTTACCGCGGAGGAGAAAAGCCTCCTCAAGAACCAGAGCA
GCGGCTCTGCGGATGTTGTCGGTGGCGGCGGGCTATCATGACGATGGCCA
CTCCGGCGCCTGTGTATCGCGGCGGCGGCGGTGGTGATGGGGATGCGCTG
TTCGGGCGAGGGCGCGGTTGCGGCGACGGGGATAGAGCTATATTTTTCGG
GAGAGTGGAGGACGGGCTCACGACCTTGGGGCTCACTGTTGGGATCTCGA
GCCCGCCAGTGGAGTGGCGGGAGCGGTGACGGGGATACCGCCGCCGAGGC
TGACCAGAGGCACCGTGGTAGGCGGCGGCGGTGGCAGCGGCAACGGTGGC
CGGCGGGGCAGCCGGTGCCGATTCAAGACTGCTGGAGCTGATGAAGGCCA
CATCGCTGGGCGTTACCGCGGAGGAGAAAAGCCTCCTCAAGAACCAGAGC
AGCGGCTCTGCGGATGTTGTCGGTGGCGGCGGGCTATCATGACGATGGCC
ACTCCGGCGCCTGTGTATCGCGGCGGCGGCGGTGGTGATGGGGATGCGCT
GTTCGGGCGAGGGCGCGGTTGCGGCGACGGGGATAGAGCTATATTTTTCG
GGAGAGTGGAGGACGGGCTCACGACCTTGGGGCTCACTGTTGGGATCTCG
AGATCTCACGTATCACATAGGCCAGTGTCTCCCCAGCCGAAGGACATGGC
CATTAAGATTCGCACCGAGGACTGCGGGCGCATCGACGTGCCCACCGGGG
CATGGGCAGACTGCAGATCTCACGTATCACATAGGCCAGTGTCTCCCCAG
CCGAAGGACATGGCCATTAAGATTCGCACCGAGGACTGCGGGCGCATCGA
CGTGCCCACCGGGGCATGGGCAGACTGCAGCTACCCTGCTACCGTCTTTC
GGTGCCGCTGCCTACCCTGCTACCGTCTTTCGGTGCCGCTGC
back to top