mRNA_L-elsbetiae_contig19080.5619.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19080.5619.1
Unique NamemRNA_L-elsbetiae_contig19080.5619.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19080.5619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19080contigL-elsbetiae_contig19080:1849..2769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size921
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19080.5619.1prot_L-elsbetiae_contig19080.5619.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19080 1893..2390 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.1553562-UTR-L-elsbetiae_contig19080:1848..18921622815793.1553562-UTR-L-elsbetiae_contig19080:1848..1892Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19080 1849..1892 +
1691683106.435671-UTR-L-elsbetiae_contig19080:1848..18921691683106.435671-UTR-L-elsbetiae_contig19080:1848..1892Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19080 1849..1892 +
1622815793.1828194-UTR-L-elsbetiae_contig19080:2390..27691622815793.1828194-UTR-L-elsbetiae_contig19080:2390..2769Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19080 2391..2769 +
1691683106.4668715-UTR-L-elsbetiae_contig19080:2390..27691691683106.4668715-UTR-L-elsbetiae_contig19080:2390..2769Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19080 2391..2769 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.1685495-CDS-L-elsbetiae_contig19080:1892..23901622815793.1685495-CDS-L-elsbetiae_contig19080:1892..2390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19080 1893..2390 +
1691683106.45507-CDS-L-elsbetiae_contig19080:1892..23901691683106.45507-CDS-L-elsbetiae_contig19080:1892..2390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19080 1893..2390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19080.5619.1

>prot_L-elsbetiae_contig19080.5619.1 ID=prot_L-elsbetiae_contig19080.5619.1|Name=mRNA_L-elsbetiae_contig19080.5619.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=166bp
MGWPNLHPDSRLSFQKIAKIASRLLPPRQQPQTLSPTAVVQLYSLIPPGK
DKKKHRKRRESKTKPRHLSATDCCSPPSPSAVRRLPLKCPCTPPHPSESA
CRATHPDYAPNTKPPFFSFSNTPSSADCCMCLLFLPAWTSITRKPVPCAG
RHLCHFSARYASSSN*
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mRNA from alignment at L-elsbetiae_contig19080:1849..2769+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19080.5619.1 ID=mRNA_L-elsbetiae_contig19080.5619.1|Name=mRNA_L-elsbetiae_contig19080.5619.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=921bp|location=Sequence derived from alignment at L-elsbetiae_contig19080:1849..2769+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAAAAACTTAGTAAATTTTCGTGTGTCCGTGCTTGATAAGACATGGGA
TGGCCCAATCTCCACCCCGACTCCCGCCTGTCCTTCCAAAAAATTGCAAA
AATTGCTTCCCGCCTGCTGCCCCCCAGACAACAGCCCCAAACGCTGTCAC
CAACTGCCGTTGTTCAGTTGTACAGCCTCATCCCCCCGGGCAAGGACAAA
AAAAAACACCGAAAAAGGCGCGAGAGCAAAACAAAACCACGGCATTTGTC
GGCAACTGACTGCTGTTCTCCACCCTCTCCCTCCGCTGTGCGGCGACTAC
CGCTTAAATGTCCCTGCACCCCCCCTCACCCCTCCGAGAGCGCCTGCCGT
GCAACACATCCAGACTACGCACCAAATACAAAACCCCCCTTTTTTTCCTT
CTCCAACACACCCTCATCAGCCGACTGCTGTATGTGCTTGCTTTTTCTGC
CCGCCTGGACGAGCATCACACGCAAGCCCGTTCCTTGCGCCGGCCGTCAC
CTGTGCCATTTTTCCGCCCGCTACGCCTCCTCCTCGAACTAATGTATTGT
AGCTAGTACAGCTTCTAGCAACGACCGACCAACGGCTCGATCAATGAGGG
CACACCGAGCCACCACTTGCTTTTGAGAAAAAAAAAACAGGTACATAGAT
CGCCCCGCCGCCCCGGCGGACGACCTACTCAAAAATAGTGCCCAGTACCC
AAAAAAAATGCCGCCTGCGCCACTCATCTATCGGAACAGAAAAAAGCCCC
GAAAACGGACAGCCTGCTTCACCGAATGGGAACTCGACGAAAGAGCCCCC
CCCCCCCCTTCCCCACTCTCTCTGATCGCCCTAGCTTCCTTTCGTCCTTC
GTCTGAAGGACCAATGTACCTCCCGTGCCGATTACGCGGCATCCAATCAA
CCTCCCTCCTACCCGTCTTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19080:1849..2769+

>mRNA_L-elsbetiae_contig19080.5619.1 ID=mRNA_L-elsbetiae_contig19080.5619.1|Name=mRNA_L-elsbetiae_contig19080.5619.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig19080:1849..2769+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGATGGCCCAATCTCCACCCCGACTCCCGCCTGTCCTTCCAAAAAAT
TGCAAAAATTGCTTCCCGCCTGCTGCCCCCCAGACAACAGCCCCAAACGC
TGTCACCAACTGCCGTTGTTCAGTTGTACAGCCTCATCCCCCCGGGCAAG
GACAAAAAAAAACACCGAAAAAGGCGCGAGAGCAAAACAAAACCACGGCA
TTTGTCGGCAACTGACTGCTGTTCTCCACCCTCTCCCTCCGCTGTGCGGC
GACTACCGCTTAAATGTCCCTGCACCCCCCCTCACCCCTCCGAGAGCGCC
TGCCGTGCAACACATCCAGACTACGCACCAAATACAAAACCCCCCTTTTT
TTCCTTCTCCAACACACCCTCATCAGCCGACTGCTGTATGTGCTTGCTTT
TTCTGCCCGCCTGGACGAGCATCACACGCAAGCCCGTTCCTTGCGCCGGC
CGTCACCTGTGCCATTTTTCCGCCCGCTACGCCTCCTCCTCGAACTAAAT
GGGATGGCCCAATCTCCACCCCGACTCCCGCCTGTCCTTCCAAAAAATTG
CAAAAATTGCTTCCCGCCTGCTGCCCCCCAGACAACAGCCCCAAACGCTG
TCACCAACTGCCGTTGTTCAGTTGTACAGCCTCATCCCCCCGGGCAAGGA
CAAAAAAAAACACCGAAAAAGGCGCGAGAGCAAAACAAAACCACGGCATT
TGTCGGCAACTGACTGCTGTTCTCCACCCTCTCCCTCCGCTGTGCGGCGA
CTACCGCTTAAATGTCCCTGCACCCCCCCTCACCCCTCCGAGAGCGCCTG
CCGTGCAACACATCCAGACTACGCACCAAATACAAAACCCCCCTTTTTTT
CCTTCTCCAACACACCCTCATCAGCCGACTGCTGTATGTGCTTGCTTTTT
CTGCCCGCCTGGACGAGCATCACACGCAAGCCCGTTCCTTGCGCCGGCCG
TCACCTGTGCCATTTTTCCGCCCGCTACGCCTCCTCCTCGAACTAA
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