mRNA_L-elsbetiae_contig1907.5615.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1907.5615.1
Unique NamemRNA_L-elsbetiae_contig1907.5615.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1907.5615.1 vs. uniprot
Match: D7G1V0_ECTSI (DRG1, developmenally regulated GTPase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1V0_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 7.200e-23
Identity = 54/60 (90.00%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 KRELLEADSGGKGAGXXXGRGFDVSKAGDTRVGFVGFPSVGKSTLLTKLTGTHSEAAAYE 180
            KRELL+ADSGG+   XXX RGFDVSKAGDTRVGFVGFPSVGKSTLLTKLTGTHSEAAAYE
Sbjct:   40 KRELLDADSGGRXXXXXXXRGFDVSKAGDTRVGFVGFPSVGKSTLLTKLTGTHSEAAAYE 99
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BLAST of mRNA_L-elsbetiae_contig1907.5615.1 vs. uniprot
Match: A0A7S2WTG8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTG8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.020e-18
Identity = 47/60 (78.33%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 KRELLEADSGGKGAGXXXGRGFDVSKAGDTRVGFVGFPSVGKSTLLTKLTGTHSEAAAYE 180
            +RELLE DS GKG G   G GFDV KAGDTRVG VGFPSVGKSTLLT LTGT SEAA+YE
Sbjct:   56 RRELLE-DSTGKGGGGGRGEGFDVRKAGDTRVGLVGFPSVGKSTLLTTLTGTFSEAASYE 114
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BLAST of mRNA_L-elsbetiae_contig1907.5615.1 vs. uniprot
Match: A0A0H5QJ66_9EUKA (Uncharacterized protein n=2 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QJ66_9EUKA)

HSP 1 Score: 85.1 bits (209), Expect = 4.940e-18
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 KRELLEADSGGKGAGXXXGRGFDVSKAGDTRVGFVGFPSVGKSTLLTKLTGTHSEAAAYE 180
            +RE+L++ S GKG G   G GFDV+KAGD RVG VGFPSVGKSTLLTKLTGTHSE A+YE
Sbjct:   41 RREVLDSGSAGKGGG---GEGFDVTKAGDARVGLVGFPSVGKSTLLTKLTGTHSEVASYE 97
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BLAST of mRNA_L-elsbetiae_contig1907.5615.1 vs. uniprot
Match: K8YZH3_NANGC (Developmentally regulated gtp binding protein 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YZH3_NANGC)

HSP 1 Score: 82.8 bits (203), Expect = 8.570e-18
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 KRELLEADSGGKGAGXXXGRGFDVSKAGDTRVGFVGFPSVGKSTLLTKLTGTHSEAAAYE 180
            +REL+E   GG G G   G GFDV+K+GDTRVG VGFPSVGKSTLLTKLTGT SEAA+YE
Sbjct:   38 RRELIEPSGGGGGKG---GEGFDVAKSGDTRVGLVGFPSVGKSTLLTKLTGTFSEAASYE 94
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BLAST of mRNA_L-elsbetiae_contig1907.5615.1 vs. uniprot
Match: A0A150H609_GONPE (DRG1 protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H609_GONPE)

HSP 1 Score: 82.4 bits (202), Expect = 4.240e-17
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 KRELLEADSGGKGAGXXXGRGFDVSKAGDTRVGFVGFPSVGKSTLLTKLTGTHSEAAAYE 180
            +R+LLE  +G KG     G GFDV+K GD RVGFVGFPSVGKSTLLTKLTGT+SEAA+YE
Sbjct:   15 RRDLLEPSTGAKGG--PGGEGFDVTKVGDARVGFVGFPSVGKSTLLTKLTGTYSEAASYE 72
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BLAST of mRNA_L-elsbetiae_contig1907.5615.1 vs. uniprot
Match: W7TBM7_9STRA (Developmentally regulated gtp binding protein 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBM7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 5.190e-17
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 KRELLEADSGGKGAGXXXGRGFDVSKAGDTRVGFVGFPSVGKSTLLTKLTGTHSEAAAYE 180
            +REL+E   GG G G   G GFDV+K+GDTRVG VGFPSVGKSTLLTKLTGT SEAA+YE
Sbjct:   38 RRELIEPSGGGGGKG---GEGFDVAKSGDTRVGLVGFPSVGKSTLLTKLTGTFSEAASYE 94
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BLAST of mRNA_L-elsbetiae_contig1907.5615.1 vs. uniprot
Match: A0A5D6XKX2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XKX2_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 7.430e-17
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 KRELLEADSGGKGAGXXXGRGFDVSKAGDTRVGFVGFPSVGKSTLLTKLTGTHSEAAAYE 180
            +RE+   D+G K AG   G GFDV+KAGDTRVG VGFPSVGKSTLLTKLTGT SEAA+YE
Sbjct:   39 RREIT--DAGSKSAGGGTGEGFDVNKAGDTRVGLVGFPSVGKSTLLTKLTGTFSEAASYE 96
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BLAST of mRNA_L-elsbetiae_contig1907.5615.1 vs. uniprot
Match: A0A812WBK9_SYMMI (DRG3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WBK9_SYMMI)

HSP 1 Score: 79.0 bits (193), Expect = 9.110e-17
Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 KRELLEADSGGKGAGXXXGRGFDVSKAGDTRVGFVGFPSVGKSTLLTKLTGTHSEAAAYE 180
            +REL E  + GK  G    RGF+VSK+GDTRVG VGFPSVGKSTLLTKLTGT S AA YE
Sbjct:   42 RRELAEVGNAGKKGGGSAERGFEVSKSGDTRVGLVGFPSVGKSTLLTKLTGTFSLAAGYE 101
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BLAST of mRNA_L-elsbetiae_contig1907.5615.1 vs. uniprot
Match: A0A7S3MC15_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MC15_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 9.450e-17
Identity = 44/60 (73.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 KRELLEADSGGKGAGXXXGRGFDVSKAGDTRVGFVGFPSVGKSTLLTKLTGTHSEAAAYE 180
            KRELLE  S  K  G    RGFDVSK+GDTRVG +GFPSVGKSTLLTKLTGT S AA YE
Sbjct:   43 KRELLETASASKKGGGAGERGFDVSKSGDTRVGLIGFPSVGKSTLLTKLTGTFSLAAGYE 102
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BLAST of mRNA_L-elsbetiae_contig1907.5615.1 vs. uniprot
Match: A0A7S2YFI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YFI1_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.040e-16
Identity = 40/60 (66.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 KRELLEADSGGKGAGXXXGRGFDVSKAGDTRVGFVGFPSVGKSTLLTKLTGTHSEAAAYE 180
            K EL+    G        GRGFDV+K+GDTR+G VGFPSVGKSTLLT LTGT SEAAAYE
Sbjct:   39 KSELVNGPGGKSAGSKDAGRGFDVTKSGDTRIGLVGFPSVGKSTLLTTLTGTRSEAAAYE 98
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1907.5615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1V0_ECTSI7.200e-2390.00DRG1, developmenally regulated GTPase 1 n=2 Tax=Ec... [more]
A0A7S2WTG8_9STRA4.020e-1878.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0H5QJ66_9EUKA4.940e-1873.33Uncharacterized protein n=2 Tax=Spongospora subter... [more]
K8YZH3_NANGC8.570e-1873.33Developmentally regulated gtp binding protein 1 n=... [more]
A0A150H609_GONPE4.240e-1771.67DRG1 protein n=1 Tax=Gonium pectorale TaxID=33097 ... [more]
W7TBM7_9STRA5.190e-1773.33Developmentally regulated gtp binding protein 1 n=... [more]
A0A5D6XKX2_9STRA7.430e-1773.33Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A812WBK9_SYMMI9.110e-1770.00DRG3 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A7S3MC15_9STRA9.450e-1773.33Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2YFI1_9STRA1.040e-1666.67Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1907contigL-elsbetiae_contig1907:5636..5827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue1.5e-18
Seed eggNOG ortholog2880.D7G1V0
Preferred nameDRG1
KEGG koko:K02156,ko:K06944
KEGG Pathwayko04320,map04320
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0002181,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005844,GO:0006139,GO:0006351,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0010646,GO:0010647,GO:0016070,GO:0016462,GO:0016604,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019001,GO:0019003,GO:0019438,GO:0019538,GO:0031974,GO:0031981,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0042802,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050789,GO:0050794,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903832,GO:1903833,GO:1990904
EggNOG free text desc.GTP binding
EggNOG OGsCOG1163@1,KOG1487@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.86881-CDS-L-elsbetiae_contig1907:5635..58271622815792.86881-CDS-L-elsbetiae_contig1907:5635..5827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1907 5636..5827 +
1691683106.2454166-CDS-L-elsbetiae_contig1907:5635..58271691683106.2454166-CDS-L-elsbetiae_contig1907:5635..5827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1907 5636..5827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1907.5615.1prot_L-elsbetiae_contig1907.5615.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1907 5636..5827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1907.5615.1

>prot_L-elsbetiae_contig1907.5615.1 ID=prot_L-elsbetiae_contig1907.5615.1|Name=mRNA_L-elsbetiae_contig1907.5615.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=64bp
KRELLEADSGGKGAGGGGGRGFDVSKAGDTRVGFVGFPSVGKSTLLTKLT
GTHSEAAAYEASA*
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mRNA from alignment at L-elsbetiae_contig1907:5636..5827+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1907.5615.1 ID=mRNA_L-elsbetiae_contig1907.5615.1|Name=mRNA_L-elsbetiae_contig1907.5615.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=192bp|location=Sequence derived from alignment at L-elsbetiae_contig1907:5636..5827+ (Laminarionema elsbetiae ELsaHSoW15)
AAAAGGGAACTCCTGGAGGCCGACTCGGGAGGCAAGGGGGCCGGAGGGGG
CGGGGGCAGGGGTTTCGACGTGAGCAAGGCAGGCGACACGAGGGTGGGCT
TTGTGGGCTTCCCGTCCGTGGGCAAGTCGACCCTGCTCACCAAGCTCACG
GGAACGCATTCCGAGGCCGCCGCGTACGAGGCGAGTGCATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1907:5636..5827+

>mRNA_L-elsbetiae_contig1907.5615.1 ID=mRNA_L-elsbetiae_contig1907.5615.1|Name=mRNA_L-elsbetiae_contig1907.5615.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig1907:5636..5827+ (Laminarionema elsbetiae ELsaHSoW15)
AAAAGGGAACTCCTGGAGGCCGACTCGGGAGGCAAGGGGGCCGGAGGGGG
CGGGGGCAGGGGTTTCGACGTGAGCAAGGCAGGCGACACGAGGGTGGGCT
TTGTGGGCTTCCCGTCCGTGGGCAAGTCGACCCTGCTCACCAAGCTCACG
GGAACGCATTCCGAGGCCGCCGCGTACGAGGCGAGTGCATGAAAAAGGGA
ACTCCTGGAGGCCGACTCGGGAGGCAAGGGGGCCGGAGGGGGCGGGGGCA
GGGGTTTCGACGTGAGCAAGGCAGGCGACACGAGGGTGGGCTTTGTGGGC
TTCCCGTCCGTGGGCAAGTCGACCCTGCTCACCAAGCTCACGGGAACGCA
TTCCGAGGCCGCCGCGTACGAGGCGAGTGCATGA
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