mRNA_L-elsbetiae_contig19064.5614.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19064.5614.1
Unique NamemRNA_L-elsbetiae_contig19064.5614.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig19064.5614.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 5.630e-5
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   28 CRR-RLKSTSLGRNHIDKNVLKTAECIFTKLLEVGASTFA 144
            CRR   K+ SLGR HID +VLKTAE +F +L +VGAST+A
Sbjct:  700 CRRLSTKAPSLGRQHIDDHVLKTAEHVFRQLTDVGASTYA 739
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19064.5614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJS4_9PHAE5.630e-562.50SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19064contigL-elsbetiae_contig19064:2699..2857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_007120.1
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.7937994-CDS-L-elsbetiae_contig19064:2698..28571622815792.7937994-CDS-L-elsbetiae_contig19064:2698..2857Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19064 2699..2857 +
1691683106.2251446-CDS-L-elsbetiae_contig19064:2698..28571691683106.2251446-CDS-L-elsbetiae_contig19064:2698..2857Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19064 2699..2857 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19064.5614.1prot_L-elsbetiae_contig19064.5614.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19064 2699..2857 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19064.5614.1

>prot_L-elsbetiae_contig19064.5614.1 ID=prot_L-elsbetiae_contig19064.5614.1|Name=mRNA_L-elsbetiae_contig19064.5614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=53bp
LPIISLQRQCRRRLKSTSLGRNHIDKNVLKTAECIFTKLLEVGASTFAQD
VS*
back to top

mRNA from alignment at L-elsbetiae_contig19064:2699..2857+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19064.5614.1 ID=mRNA_L-elsbetiae_contig19064.5614.1|Name=mRNA_L-elsbetiae_contig19064.5614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=159bp|location=Sequence derived from alignment at L-elsbetiae_contig19064:2699..2857+ (Laminarionema elsbetiae ELsaHSoW15)
TTGCCAATCATTTCGTTGCAACGGCAATGCAGGCGCAGGCTCAAGTCTAC
CAGCCTTGGGAGAAACCATATTGACAAGAACGTGCTCAAGACTGCCGAAT
GCATCTTTACCAAACTCCTTGAAGTTGGAGCCAGCACGTTCGCCCAAGAC
GTGAGTTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig19064:2699..2857+

>mRNA_L-elsbetiae_contig19064.5614.1 ID=mRNA_L-elsbetiae_contig19064.5614.1|Name=mRNA_L-elsbetiae_contig19064.5614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig19064:2699..2857+ (Laminarionema elsbetiae ELsaHSoW15)
TTGCCAATCATTTCGTTGCAACGGCAATGCAGGCGCAGGCTCAAGTCTAC
CAGCCTTGGGAGAAACCATATTGACAAGAACGTGCTCAAGACTGCCGAAT
GCATCTTTACCAAACTCCTTGAAGTTGGAGCCAGCACGTTCGCCCAAGAC
GTGAGTTGATTGCCAATCATTTCGTTGCAACGGCAATGCAGGCGCAGGCT
CAAGTCTACCAGCCTTGGGAGAAACCATATTGACAAGAACGTGCTCAAGA
CTGCCGAATGCATCTTTACCAAACTCCTTGAAGTTGGAGCCAGCACGTTC
GCCCAAGACGTGAGTTGA
back to top