mRNA_L-elsbetiae_contig19052.5610.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19052.5610.1
Unique NamemRNA_L-elsbetiae_contig19052.5610.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19052.5610.1 vs. uniprot
Match: D7FTP0_ECTSI (Similar to E1a binding protein P400 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP0_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 3.590e-5
Identity = 30/50 (60.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:  124 GEVSSEPMDGXXXXXXXXXAFSDDSGAYMEDMMMLRADHGEQEASGSCGG 273
            G+VSS+PMD          AFSDDSGAYMED+MMLRAD  E E S   GG
Sbjct:  340 GDVSSDPMDSDED------AFSDDSGAYMEDIMMLRADQKESEVSQGLGG 383
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19052.5610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTP0_ECTSI3.590e-560.00Similar to E1a binding protein P400 (Partial) (Fra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19052contigL-elsbetiae_contig19052:1135..2010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.4664304-CDS-L-elsbetiae_contig19052:1134..13181622815792.4664304-CDS-L-elsbetiae_contig19052:1134..1318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19052 1135..1318 -
1691683106.0355747-CDS-L-elsbetiae_contig19052:1134..13181691683106.0355747-CDS-L-elsbetiae_contig19052:1134..1318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19052 1135..1318 -
1622815792.4829404-CDS-L-elsbetiae_contig19052:1906..20101622815792.4829404-CDS-L-elsbetiae_contig19052:1906..2010Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19052 1907..2010 -
1691683106.0468884-CDS-L-elsbetiae_contig19052:1906..20101691683106.0468884-CDS-L-elsbetiae_contig19052:1906..2010Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19052 1907..2010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19052.5610.1prot_L-elsbetiae_contig19052.5610.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19052 1135..2010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19052.5610.1

>prot_L-elsbetiae_contig19052.5610.1 ID=prot_L-elsbetiae_contig19052.5610.1|Name=mRNA_L-elsbetiae_contig19052.5610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
EESSSSSSGAGSSSDDGGGGAAREGSSSEEEEGQSSSGGQGGEVSSEPMD
GDGDEDEDEDAFSDDSGAYMEDMMMLRADHGEQEASGSCGGAGAGA
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mRNA from alignment at L-elsbetiae_contig19052:1135..2010-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19052.5610.1 ID=mRNA_L-elsbetiae_contig19052.5610.1|Name=mRNA_L-elsbetiae_contig19052.5610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig19052:1135..2010- (Laminarionema elsbetiae ELsaHSoW15)
GAGGAGAGCAGCAGCAGCAGCAGCGGCGCCGGCAGTAGCAGCGATGATGG
CGGTGGTGGCGCCGCTAGAGAAGGGTCGAGCTCTGAAGAAGAGGAGGGAC
AGAGGTGTGTTCATGCGTGAGGAGTGCTGGCTCGCGTCGTCTTGGCCGGG
GGGGCACCGTCGGCGACACTGTTTTTGTGCGGACGTGATGCCGATGCCCC
CCCCCCCTATGTATGTACCCTTGCAGATGCCCCTGTTTTGGTCCCTCTCG
GAGACGCGCGTGGACGTTGCCGTTGCCGTTTTTCGTGTGCCTGTCGCTGT
TTGTGTGTGCTGTTTGCATTGCTGCTATTTGCATTGCTGCTATTTGCATT
GCTGCTGCTGCTGCTGCTGTTGCTTCTCCCCAGTGATACTCTTGTTACGC
CGTTTCCAGTTCTATCTACACTGCAGCCCTCTCGTCGTGCTTCGTGCCCC
ACGCACTATCCGCCCCCCCCCCCCCCCCCCCCCCTTTCTCCCCCCCCCCC
GGCGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGCGGGCGCGGGGGG
GGGGGGGGGGGGGGNNNNNNNNNNTTTGTTTCCCCCCTGTTTTACCTTTT
TTCCCCCTTTTCCTTTTTTTTCTCCCCCCCACCCCCCTCCTTGTCTTTTT
GGCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCAATTTTAGCTCATCCG
GCGGCCAGGGCGGAGAGGTTAGCAGTGAGCCGATGGACGGCGACGGCGAC
GAGGACGAGGACGAGGACGCCTTCAGCGACGACTCCGGGGCGTACATGGA
GGACATGATGATGCTGCGAGCCGACCACGGGGAACAGGAGGCGTCGGGGA
GCTGCGGCGGAGCTGGAGCCGGTGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19052:1135..2010-

>mRNA_L-elsbetiae_contig19052.5610.1 ID=mRNA_L-elsbetiae_contig19052.5610.1|Name=mRNA_L-elsbetiae_contig19052.5610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig19052:1135..2010- (Laminarionema elsbetiae ELsaHSoW15)
GAGGAGAGCAGCAGCAGCAGCAGCGGCGCCGGCAGTAGCAGCGATGATGG
CGGTGGTGGCGCCGCTAGAGAAGGGTCGAGCTCTGAAGAAGAGGAGGGAC
AGAGGAGGAGAGCAGCAGCAGCAGCAGCGGCGCCGGCAGTAGCAGCGATG
ATGGCGGTGGTGGCGCCGCTAGAGAAGGGTCGAGCTCTGAAGAAGAGGAG
GGACAGAGCTCATCCGGCGGCCAGGGCGGAGAGGTTAGCAGTGAGCCGAT
GGACGGCGACGGCGACGAGGACGAGGACGAGGACGCCTTCAGCGACGACT
CCGGGGCGTACATGGAGGACATGATGATGCTGCGAGCCGACCACGGGGAA
CAGGAGGCGTCGGGGAGCTGCGGCGGAGCTGGAGCCGGTGCGCTCATCCG
GCGGCCAGGGCGGAGAGGTTAGCAGTGAGCCGATGGACGGCGACGGCGAC
GAGGACGAGGACGAGGACGCCTTCAGCGACGACTCCGGGGCGTACATGGA
GGACATGATGATGCTGCGAGCCGACCACGGGGAACAGGAGGCGTCGGGGA
GCTGCGGCGGAGCTGGAGCCGGTGCG
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