mRNA_L-elsbetiae_contig1905.5609.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1905.5609.1 vs. uniprot
Match: D8LFU2_ECTSI (Sec23_helical domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFU2_ECTSI) HSP 1 Score: 913 bits (2360), Expect = 0.000e+0 Identity = 546/789 (69.20%), Postives = 600/789 (76.05%), Query Frame = 1
Query: 1 PPKFRQTVEFELPLDSKGAMMRNGEVLLESSYLAKEPAAARPVVYLAVVDESGGPEYHAAVAEVLDACVKSLPDDCRLGVVTMSDRVGLVDLTAPLPHVQFVDLGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNWSETAGAVALSEVTSLEELVCPLGGNRERMSANVRGLRGACRYGGAAPAEGQTGTRATGLAVKLLLDLLLRASPGGA-AGTSSTASSGAPQRGGR----GARVPAGGMPPAVQRG---GSFTFAGCRLMLFLGGAPDRGPGAVGVVAPALVGGG--DAEGDRFVHDHLFRGEPRALGFYRSQAYRAASCGVSVDVHCFANTACEHFGLSSIAPLALTTGGGVYRHSLLHQREGEDRMATLAGEVCGELLKPRVYDGLLRVRTSTEFNVNRDGVYGNLSADPRLESLWHVASCSSSQAFAMDFXXXXXXXXXXXXXXXXXXASCTIQSAFAYTAVVPDTELGNEEGG-HAGNGGKAGSAARMVTVRRLRVSTVRTDSSPSVEVVAKAADPATVAAVLAHKVVSEARRSGFAEARALLRDWLANFVFGLSQSLSPEGGGXXXXXXXXXXAGVER---LTTDPLVVGVARQVFGLLQSPVLHPTRGIADERVSLLSRLSSLDPESLSIALYPEMQGYATPDIRLANSLSLSRRVSHPVNEASPACRIFVVDTFWRVIVHYADSAVTLAAGEAAGEEPLPFPPSRDSAIGQYLELRRAVRPTAGQEVVYSRTGTQEAFFFEEALLEDQALPRSEREETFKTFFAEMIRDVVPPS 2325
P ++TVEFELPLDSKGAMMRNGEVLLE+ YLA+EPAAARP+VYLAVVDESGGPEYH +AEVLD CV+ LPDDCRLGVVT+SDRVGLVDL APLPHVQ VDLG G XXXXXXXXX XXXXX +W+E + AV LSEV SLEEL+CP+GGNRE +SANVRGLRGACR GGAA A G+ GTR TGLAVKLLL+LLL A+PG A AG +STA G R GR G + G A +RG G F F GCRLMLFLGGAPDRGPGA+GVV+P + GGG + E + FVH LF G+PRALGFYR QAYRAASCGVSVDVHCFAN C HFGLSS+APLA+TTGGGVYRHSLLHQREGE+R T+A EVC ELL+PRV L R S FAMDF XXXXXAS T+QSAFAYTAVVPD +E +A NGG+A +AARMVTVRRLRVSTVRTDSSPSVEVVA AADPATVAAVLAHKVVSEARRSGFAEAR LLRDWLANF+ GL++SL+ GG GVE+ L +PL+VGVARQVFGLLQSPVLHPT+GIADERVSLLSRLSSLDPESLSIALYPEMQGYATPDIRLANSLSLSR+ V EASPACRIFVVDTFWRV+VHYADS +LAAGEAAGE PLPFPPSRDSAIGQYLE+RRAVRP AGQEVVYSR GT EAFFFEE LLED+ LPR+E+ ETFK FFAE++RDV+ S
Sbjct: 21 PELTQETVEFELPLDSKGAMMRNGEVLLENGYLAQEPAAARPLVYLAVVDESGGPEYHDVMAEVLDTCVQRLPDDCRLGVVTVSDRVGLVDLAAPLPHVQLVDLGSGTXXXXXXXXXTAGQPXXXXX-----------SWTEPSSAVGLSEVMSLEELLCPIGGNRELISANVRGLRGACRDGGAA-AAGRAGTRVTGLAVKLLLNLLLGAAPGPAGAGATSTAGGGRDARDGRVGAPGRKTSTGAS--AAERGVGGGGFPFPGCRLMLFLGGAPDRGPGALGVVSPNVAGGGKRNVETEGFVHHQLFPGKPRALGFYRGQAYRAASCGVSVDVHCFANKTCGHFGLSSLAPLAMTTGGGVYRHSLLHQREGENRAVTVAREVCAELLQPRV---LRRPLAS----------------------------------FAMDFEFRGAGGGAELQWXXXXXASATVQSAFAYTAVVPDANASSEAASDNAINGGEATNAARMVTVRRLRVSTVRTDSSPSVEVVATAADPATVAAVLAHKVVSEARRSGFAEARGLLRDWLANFISGLAESLAASEGGRESAIPGG--GGVEQAQALMANPLIVGVARQVFGLLQSPVLHPTKGIADERVSLLSRLSSLDPESLSIALYPEMQGYATPDIRLANSLSLSRQA---VTEASPACRIFVVDTFWRVVVHYADSPASLAAGEAAGEAPLPFPPSRDSAIGQYLEMRRAVRPLAGQEVVYSRPGTPEAFFFEETLLEDRPLPRAEKAETFKGFFAEIVRDVLQTS 753
BLAST of mRNA_L-elsbetiae_contig1905.5609.1 vs. uniprot
Match: A0A061RZK4_9CHLO (Sec23 sec24 transport family protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZK4_9CHLO) HSP 1 Score: 150 bits (378), Expect = 2.330e-33 Identity = 209/815 (25.64%), Postives = 325/815 (39.88%), Query Frame = 1
Query: 4 PKFRQTVEFELPLDSKGAMMRNGEVLLESSYLAKEPAAARP--------VVYLAVVDESGGPEYHAAVAEVLDACVKSLPDDCRLGVVTMSDRVGLVDLTAPLPHVQFVDLGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNWSETAGAVALSEVTSLEELVCPLGGNRERMSANVRGLRGACRYGGAAPAEGQTGTRATGLAV-KLLLDLLLRASPGGAAGTSSTASSGAPQRGGRGARVPAGGMPPAVQRGGSFTFAGCRLMLFLGGAPDRGPGAVGVVA--------PALVGGGDAE------------------------------------------GDRFVHDHLFRGEPRALGFYRSQAYRAASCGVSVDVHCFANTACEHFGLSSIAPLALTTGGGVYRHSLLHQREGEDRMATLAGEVCGELLKPRVYDGLLRVRTSTEFNVNRDGVYGNLSADPRLESLWHVASCSSSQAFAMDFXXXXXXXXXXXXXXXXXXASCTIQSAFAYTAVVPDTELGNEEGGHAGNGGKAGSAARMVTVRRLRVSTVRTDSSPSVEVVAKAADPATVAAVLAHKVVSEARRSGFAEARALLRDWLANFVFGLSQSLSPEGGGXXXXXXXXXXAGVERLTTDPLVVGVARQVFGLLQSPVL---------HPTRGIADERVSLLSRLSSLDPESLSIALYPEMQGYATPDIRLANSLSLSRRVSHPVNEASPACRIFVVDTFWRVIVHYADSAVTLAAGEAAGEEPLPFPPSRDSAIGQYLELRRAVRPTAGQEVVYSRTGTQEAFFFEEALLED 2244
P+ + ++ E+ +KG ++ E + +E AAA P VY+AVVD + G E+ V L A +++LP G+++ D++GL D+ +P V++V L ++ + L + +LE+L+ P+G ++ M A + L G AA G+ G T AV + L L G AS P +G GG P+ G + G R+M FL GAP+ GPG V + P + DA G H +PR FY A AA+ G++VD++ +N E GL + PLA ++GG + + EG A L +V L + LR+RTS EF V R +G+L D + E+L+HV SC + A DF T+Q AF YTA++P ++ + +A RM RR+R+ TV+ + + + AD V ++L HKVV ++ G EAR LL+DWL + + +L P G A P + + R V+ +LQSP+L HP D R L + + L P L+ A+YP + +++P+ SLSR +E IF++D+F +IV+Y + +P PPS+ S + Q + R R A Q V R G +A F + L+E+
Sbjct: 100 PELQDSI-VEIKCSAKGMLLE-----AEEAGDPEEKAAAIPDNVELVGRPVYVAVVDLACGEEFLELVKSSLLAALEALPPVALFGIISFCDKIGLHDVQGKVPIVKYVPLVSAAE-------------------------------GQSPTRLELKDALALEDLLAPVGQFKDSMYAALEALEPMNADGAAAGGRGKRGFGGTIQAVLRYLSGLAAMERVGQLLDPEEAASLAGPTQG----SAENGGPEPSFMIG----YTGARVMCFLAGAPNHGPGRVERASIPSGSHGRPRKLSASDAATALGCDPSFPYNPATASSPSRPPXXXXXXXXXXXXXXXXXXXGGSEPHPADVVVDPRCALFYADAAAAAAALGIAVDLYAISN---EVIGLECLEPLASSSGGQLCWYP---GPEG----AALPQDVYRRLATHQARSCRLRLRTSPEFKVQRG--FGHLVEDQQYENLYHVVSCGAHDCVAFDFEFASSAGFLDHDDCPP-----TLQLAFQYTALLPHKPPAADQ-----DSPQAPKWLRME--RRMRIHTVQVAVARGPKDLYAYADTDAVLSLLMHKVVRASQEDGVEEARLLLQDWLVVLLAHYNANLYP---GRIDEADMVFEA-------CPALQPLPRLVYVMLQSPLLANDQSRRQHHP-----DLRCFLQNLWALLPPADLARAVYPVLSSWSSPEQPAYPKHSLSRAALLAASEP-----IFLLDSFTSLIVYYTEDCPA----------DIPCPPSQSSKLRQTINHLRQNRIVAPQVKVI-RAGVDDASPFTDHLIEE 814
BLAST of mRNA_L-elsbetiae_contig1905.5609.1 vs. uniprot
Match: A0A5A7Q7G6_STRAF (Sec23/sec24 transport family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7Q7G6_STRAF) HSP 1 Score: 131 bits (330), Expect = 9.220e-28 Identity = 122/417 (29.26%), Postives = 189/417 (45.32%), Query Frame = 1
Query: 1111 GEVCGELLKPRVYDGLLRVRTSTEFNVNRDGVYGNLSADPRLESLWHVASCSSSQAFAMDFXXXXXXXXXXXXXXXXXXASCTIQSAFAYTAVVPDTE---LGNEEGGHAGNGGKAGSAAR--MVTVRRLRVSTVRTDSSPSVEVVAKAADPATVAAVLAHKVVSEARRSGFAEARALLRDWLANFVFGLSQSLSPEG---GGXXXXXXXXXXAGVERLTTDPLVVGVARQVFGLLQSPVL--HPTRGIADERVSLLSRLSSLDPESLSIALYPEMQGYATPDIRLANSLSLSRRVSHPVNEASPACRIFVVDTFWRVIVHYADSAVTLAAGEAAGEEPLPFPPSRDSAIG---QYLELRRAVRPTAGQEVVYSRTGTQEAFFFEEALLEDQALPRSEREET--FKTFFAEMIRDVV 2316
G + L +P ++ +LRVRTS+EF + YG+ DP E++ H+ C S +A DF T+Q AF Y+ +VP E LG+ GS+ R RRLR+ TV+ D++ + + + DP V ++L H+V+ + +G E R LL +WL N + + GG T P + + R VF LL++P+L H D R+ L S+L+P SL++A+YP + Y TPD + SLSR + SP IF++D F +IV Y+ +A + LPFPP ++ + L+ R + P ++V+ R G +A FE L+E+Q + S F +F E+ RDVV
Sbjct: 320 GNMYRMLSRPYAFNCVLRVRTSSEFKLGHS--YGHFFPDPEYENVQHIICCDSFATYAYDFEFVNDAGFSRHSRERP-----TLQIAFQYSVIVPSDEPFPLGS------------GSSKRDKYSLKRRLRIRTVQLDTARHINEIYDSVDPEVVLSILVHEVILSSLENGVREGRILLHEWLVNLTAQYNDAFKTAEYTRGGLTTSQFDVA------FTQCPQLQQLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLTLAIYPLLASYETPDRQAFPRHSLSRAAL--LTSGSP---IFLLDAFTTLIVFYSSTA----------DSALPFPPPQNCLLRTTINKLKQGRIITP----KLVFIRGGQDDATMFENYLIEEQDVEGSGITSAMGFVSFLDEINRDVV 692
BLAST of mRNA_L-elsbetiae_contig1905.5609.1 vs. uniprot
Match: A0A5A7PKM6_STRAF (Sec23/sec24 transport family protein (Fragment) n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PKM6_STRAF) HSP 1 Score: 119 bits (297), Expect = 7.670e-25 Identity = 95/333 (28.53%), Postives = 149/333 (44.74%), Query Frame = 1
Query: 1129 LLKPRVYDGLLRVRTSTEFNVNRDGVYGNLSADPRLESLWHVASCSSSQAFAMDFXXXXXXXXXXXXXXXXXXASCTIQSAFAYTAVVPDTELGNEEGGHAGNGGKAGSAARMVTVRRLRVSTVRTDSSPSVEVVAKAADPATVAAVLAHKVVSEARRSGFAEARALLRDWLANFVFGLSQSLSPEGGGXXXXXXXXXXAGVERLTTDPLVVGVARQVFGLLQSPVL--HPTRGIADERVSLLSRLSSLDPESLSIALYPEMQGYATPDIRLANSLSLSRRVSHPVNEASPACRIFVVDTFWRVIVHYADSAVTLAAGEAAGEEPLPFPPSRD 2121
L + ++ +LR+RTS+EF + YG+ DP E++ H+ C S +A DF T+Q AF Y+ VVP G + G + A+ RRLR+ TV+ D++ + + + DP V ++L H+V+ + +G E R LL +WL N + + T P + + R VF LL++P+L H D R+ L S+L+P SL++A+YP + Y TPD + SLSR + SP IF +D F ++V Y+ +A + LPFPP +D
Sbjct: 7 LSRSHAFNCVLRIRTSSEFKLGHS--YGHFFPDPEYENVQHIICCDSFATYAYDFDFVNDAGFSRHSRERP-----TLQIAFQYSVVVPSD-------GPSLQGSGSSKRAKYSLKRRLRIRTVQLDTAHHISEIYDSVDPEVVLSILVHEVILSSMENGVREGRILLHEWLVNLTAQYNDAFKIAEYARGNLTTSQVDVA---FTQCPQLQSLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLTLAIYPLLVSYETPDKQAFPRHSLSRAAL--LTSGSP---IFFLDAFTTLVVFYSSTA----------DSALPFPPPQD 307
BLAST of mRNA_L-elsbetiae_contig1905.5609.1 vs. uniprot
Match: S8DN57_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8DN57_9LAMI) HSP 1 Score: 100 bits (250), Expect = 3.030e-18 Identity = 96/366 (26.23%), Postives = 160/366 (43.72%), Query Frame = 1
Query: 757 TFAGCRLMLFLGGAPDRGPGAVGVVAPALVGGGDAEGDRFVHDHLFRGE-------PRALGFYRSQAYRAASCGVSVDVHCFANTACEHFGLSSIAPLALTTGGGVYRHSLLHQREGEDRMATLAGEVCGELLKPRVYDGLLRVRTSTEFNVNRDGVYGNLSADPRLESLWHVASCSSSQAFAMDFXXXXXXXXXXXXXXXXXXASCTIQSAFAYTAVVPDTELGNEEGGHAGNGGKAGSAARMVTVRRLRVSTVRTDSSPSVEVVAKAADPATVAAVLAHKVVSEARRSGFAEARALLRDWLANFV------FGLSQSLSPEGGGXXXXXXXXXXAGVE-RLTTDPLVVGVARQVFGLLQSPVLH 1812
T+A R++ FL G PD GPG + + R+ + +GE P FY+ A A G+ V + FA T E+ L+S+ L++ +GG ++ +S +D +TL ++ L +P ++ +LRVRTS+EF + D YG+ DP E++ H+ C S +A DF T+Q AF Y+ +V E + A + RRLR+ T++ ++ ++ V D + +L H+V+ + +G EAR LL +WL N F +SQ+ S A ++ T P + + R +F LL++P+L
Sbjct: 241 TYALARVLTFLSGPPDYGPGQL-------------DTRRYGEQYASKGEDADRALLPEQTPFYKDLAAIAVQAGICVSI--FAVTD-EYTDLASLKFLSIESGGSLFLYS-----NTDD--STLPQDLFRMLNRPYAFNCVLRVRTSSEFKL--DHSYGHFFPDPEYENVQHIIVCDSFATYAYDFDFANEVGFSRHSKEPP-----TVQIAFQYSVIVKHDEPPSSNS-------SASKRTQYSVRRRLRIRTLQFAAARNINEVYDGVDSEVILCILVHEVILSSLENGVREARILLHEWLVNLTAQYNDAFNVSQAASHN-------------APIDVAFTQCPQLQSLPRLIFALLRNPLLR 556
BLAST of mRNA_L-elsbetiae_contig1905.5609.1 vs. uniprot
Match: A0A7S3BZ76_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BZ76_9VIRI) HSP 1 Score: 62.4 bits (150), Expect = 1.190e-7 Identity = 49/149 (32.89%), Postives = 68/149 (45.64%), Query Frame = 1
Query: 1207 YGNLSADPRLESLWHVASCSSSQAFAMDFXXXXXXXXXXXXXXXXXXASCTIQSAFAYTAVVPD--TELGNEEGGHAGNGGKAGSAARMVTVRRLRVSTVRTDSSPSVEVVAKAADPATVAAVLAHKVVSEARRSGFAEARALLRDWLA 1647
YG+L+AD +++L+H F DF T+Q A Y+ +VP G + NG A A R+ RRLRV T + + V + + VA +LAHKV++ +R G AEAR LLRDWLA
Sbjct: 2 YGHLAADADVDNLYHAVCLDECSTFMFDFEFESGDGFDYDVLP-------TVQLAIRYSLLVPTGGXXXXXXXGETSSNGAAARGAYRVE--RRLRVVTAQARVAKKVSTLHDSCRADVVAGLLAHKVIAASREEGAAEARLLLRDWLA 141 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1905.5609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1905.5609.1 >prot_L-elsbetiae_contig1905.5609.1 ID=prot_L-elsbetiae_contig1905.5609.1|Name=mRNA_L-elsbetiae_contig1905.5609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=757bp MMRNGEVLLESSYLAKEPAAARPVVYLAVVDESGGPEYHAAVAEVLDACVback to top mRNA from alignment at L-elsbetiae_contig1905:11925..22619- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1905.5609.1 ID=mRNA_L-elsbetiae_contig1905.5609.1|Name=mRNA_L-elsbetiae_contig1905.5609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10695bp|location=Sequence derived from alignment at L-elsbetiae_contig1905:11925..22619- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1905:11925..22619- >mRNA_L-elsbetiae_contig1905.5609.1 ID=mRNA_L-elsbetiae_contig1905.5609.1|Name=mRNA_L-elsbetiae_contig1905.5609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4542bp|location=Sequence derived from alignment at L-elsbetiae_contig1905:11925..22619- (Laminarionema elsbetiae ELsaHSoW15)back to top |