mRNA_L-elsbetiae_contig1905.5608.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1905.5608.1
Unique NamemRNA_L-elsbetiae_contig1905.5608.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1905.5608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1905contigL-elsbetiae_contig1905:4163..7309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1796
Cds size1041
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1905.5608.1prot_L-elsbetiae_contig1905.5608.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1905 4540..5580 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.0893354-UTR-L-elsbetiae_contig1905:4162..45391622815792.0893354-UTR-L-elsbetiae_contig1905:4162..4539Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1905 4163..4539 -
1691683105.7571373-UTR-L-elsbetiae_contig1905:4162..45391691683105.7571373-UTR-L-elsbetiae_contig1905:4162..4539Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1905 4163..4539 -
1622815792.1106331-UTR-L-elsbetiae_contig1905:5580..56411622815792.1106331-UTR-L-elsbetiae_contig1905:5580..5641Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1905 5581..5641 -
1691683105.7760189-UTR-L-elsbetiae_contig1905:5580..56411691683105.7760189-UTR-L-elsbetiae_contig1905:5580..5641Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1905 5581..5641 -
1622815792.1203663-UTR-L-elsbetiae_contig1905:6992..73091622815792.1203663-UTR-L-elsbetiae_contig1905:6992..7309Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1905 6993..7309 -
1691683105.7927852-UTR-L-elsbetiae_contig1905:6992..73091691683105.7927852-UTR-L-elsbetiae_contig1905:6992..7309Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1905 6993..7309 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.100717-CDS-L-elsbetiae_contig1905:4539..55801622815792.100717-CDS-L-elsbetiae_contig1905:4539..5580Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1905 4540..5580 -
1691683105.7673297-CDS-L-elsbetiae_contig1905:4539..55801691683105.7673297-CDS-L-elsbetiae_contig1905:4539..5580Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1905 4540..5580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1905.5608.1

>prot_L-elsbetiae_contig1905.5608.1 ID=prot_L-elsbetiae_contig1905.5608.1|Name=mRNA_L-elsbetiae_contig1905.5608.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=347bp
MKQEEKEALHRALQEATETLGDVHLKVAVALDELGLCVRRAGRLAEAEQF
FRQALQIKEEKLPHSDAEVVWTLEGLGRCVREQGRAREAEGLMKRALQIR
EAKLGPAGMSVAVTTHELARCVRQAGRPEEAEELFKQALQMKNALVGPDD
TSAAVTLHELGRCLRAAGRLEEAEGHLKRALLIKQAYLKIDDLEIATTLH
ELGLCVLQMGRLGEADKLFEDALQMKKAKLGADHPQVAVTLHELGRCARA
GHRLAEAEMIFKRALQIKETRLSPHHLEIPWTLIELGRCVREAGRTEEAK
SFLKRAFQIQEAKLGSDHESMAWTLHDLDLCVQTAGKSGEVIEVAE*
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mRNA from alignment at L-elsbetiae_contig1905:4163..7309-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1905.5608.1 ID=mRNA_L-elsbetiae_contig1905.5608.1|Name=mRNA_L-elsbetiae_contig1905.5608.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3147bp|location=Sequence derived from alignment at L-elsbetiae_contig1905:4163..7309- (Laminarionema elsbetiae ELsaHSoW15)
CTTTCCCGGAGAGACAGTACTCCGGAGAGATCTACACAAGGCGGAGGACA
TGAAGCGCCCTTTTAAACGTGCGTGCGCGCGTGCCGTGGATGACACAAGA
TACCACCCCTACTCTGCGTGATTTTGTTCACCTTATTGTGTGGGTGTGGG
TTCCGATGTTCCGACCGCGCTGCCTGCCCCAGTATAGGGGTCCCCTGCTG
TATCTATATAAATCGACCATGCATTCCAGTTCCTGAACACGACGTGATCG
CCTCGACTAAACCCTGACCCTTGGGGCCACCACTGGTCTACGCTACCGGC
AGAAACATCGAGCGCCGGTGAGAGTGCCCCCCTCGAAGTTTTCCCCCTAC
GTTGGCTTCGTGGGTTTACCGCGCGGTTTTAACCCATCGGCCAAGTTCAA
CTGCTGTCGTGTGCGATGTACATCAGTAGTTTTCGATGTGTTGGTGTGCC
TTCGTTGCGAACTCGGCGTGTTGCAGGTTTGGTAGTCTAGATAAGCGTCT
GAGTCCTCTTGTTGCTTGGCGCCCGATTGCGAGCAGAAGAGCCAGTTCAT
ACGAAGAAACAAGACGTCAGTCGTCGAGGCTGGATACTTTTGTGATGGGA
GAATAAATACCAGACCGAATTCGCCGGTCAACATGATTATGAACGGAACC
GTTGTTGCACAGGTTGGTACCATAGCATTTACCCCCAAAATATGACACCC
GGCATTTGTATCTCGGCACAAAGTCTCACGAGTAGCTATGTAGCACGGAT
CGTCCGCTACAACAGTGTACAACAATACGCGGTGTAAGACAAATATAGAG
TCTAACCCGTGCAAACTCGCTGTTGCCATTTGATACACTCAATCATATAA
CCTCCTGGGCCACTGCAAGTGCAGGACACAACTGCTGTTGGAATATACCT
TCAGGACAAACTGCTGTACGCTACATCTGACCAGCTGTTGAAAAGACGAG
CAGAGTTTGCAAGACGCGAGAGTAGAATACGCAATTCCAGGCGTGCTGTT
TGTATCTAATTTAAATTTATGATATTCAGGATCAACCTAGGGTCAGCAGA
GAAAGTTTGGAATATGGTCCGAGCGCAAAAGCATTTGCACGAACTCAACA
TCGTTTTCTCCAGCAGTATCAGCGATCGTGCCCCAAGTGAGCCTTGATAA
TAGTGAAGATGCTTGGCAAGCGAGAGAAAAGTGCTCGCGTGCAGCATATG
GCAAATAACACGCACCAGTTTTGTGGTTGAATATGAACTGTCCATTGTGT
AGATGCGGCGATATACTTCACAACTCAAGCAAGCAGGGAGCGCAGAACCA
ACGCTCGTTTTTCTGTTTGAATGTAGAACTCAATTTGCAGCCCATACACA
CGTGTAGTGTGTCGTGTTGTTGCTTCTGTCGTTCCTCTGTGTGCTCGTTT
GGTGCTGCGACGCGCTCTTGCTCATTTTTGCATTCCTTTTTACCCATCCG
ACAGAAACTCGGACATTCCAGCCAACCATCTTTGGGAGATAGCATTTGAC
CATAGAAACTTTCGAGTATTCTCCGTTATATCGTATCGTTCTTGTGTGTT
GCAAAGCCGATCCCGTGAGATTCCGCAGTCCCTCGTTTTCGGAGTACCAT
CGCGTCCGCTACCCTTGTCTGATGCGCTCTCTCCGGAAAATCTTACACTT
CTCTGCTTCCACAAACAGTATCTGGTAGACAATTCTGGTATCGGGTCCGC
AGCTGGAGCAAGAGCCAAAGATCCGTTCGATGAAGCAAGAAGAGAAGGAA
GCGCTTCATCGAGCCCTCCAGGAGGCCACCGAAACGCTGGGCGACGTCCA
CTTGAAGGTCGCCGTCGCTCTGGACGAGCTGGGCTTGTGTGTGCGAAGGG
CGGGGCGGCTGGCGGAAGCTGAACAATTCTTCAGGCAAGCTCTCCAGATA
AAGGAGGAAAAGCTGCCGCACAGCGACGCCGAAGTCGTCTGGACGCTAGA
AGGGCTAGGCCGGTGTGTGCGAGAGCAGGGACGGGCACGGGAGGCGGAAG
GGTTGATGAAGCGGGCCCTGCAAATCAGGGAGGCGAAGCTCGGACCCGCT
GGTATGAGCGTCGCGGTGACGACTCATGAGTTGGCTCGGTGCGTTCGACA
AGCGGGACGACCGGAGGAGGCTGAAGAGCTGTTTAAGCAAGCGCTTCAGA
TGAAGAATGCGCTCGTCGGACCTGACGATACTAGTGCCGCCGTAACCTTG
CACGAGCTCGGTCGGTGTTTGCGAGCAGCAGGTCGACTGGAGGAGGCGGA
AGGCCACCTAAAACGAGCGCTCCTGATAAAACAAGCTTACCTGAAGATCG
ACGATCTCGAGATCGCAACGACTCTGCACGAACTAGGCCTGTGCGTCCTG
CAGATGGGGCGGCTGGGCGAGGCCGACAAGCTTTTCGAAGACGCGCTCCA
GATGAAAAAGGCCAAGCTTGGGGCTGATCACCCCCAGGTTGCCGTGACTC
TTCACGAGCTAGGTCGGTGCGCACGTGCGGGGCACCGATTGGCAGAGGCT
GAAATGATTTTCAAGCGGGCGCTACAGATTAAGGAGACACGCTTGTCTCC
ACACCACCTTGAAATCCCCTGGACGCTCATCGAACTGGGTCGGTGTGTTC
GAGAGGCAGGGCGAACTGAAGAGGCTAAGTCCTTTCTCAAGCGAGCTTTC
CAAATCCAGGAGGCAAAGCTGGGATCCGACCACGAGAGCATGGCTTGGAC
TTTGCACGACCTGGATTTGTGTGTCCAAACAGCGGGAAAGTCGGGGGAGG
TTATTGAGGTCGCCGAGTAGAACGAAGCGCTCTCGCATTCAGAGCCTTGT
GGACTGTTCTAAACCAGTGGTGGTACAGCGGAAGTTGTACTCTAAAGGTT
GATGGGGAACTTGCAATTCACCTCGCGAGACTATGGTAGTCATGTAGAGA
GTGGTTGCAGGGAAGATTTGGCGTGCTTTGTTTCCTATTGCGCCTACGTT
TGACTCGCATATTGGCATACAACATTAATCTTCACGTACTAAGCTGCAGG
GAGAGCGAGAGTACGATTGCGTGCACCAGGCCATACTTCAGAGGTCCTGG
TTCCTTTTGGGGAATGATCATATCTTGTTTCTTGCTGTCTCTATCGGGTG
CGTCTTGCAGAGATGATCTGAGGTACAGGTGGCGGGACTTTGTCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1905:4163..7309-

>mRNA_L-elsbetiae_contig1905.5608.1 ID=mRNA_L-elsbetiae_contig1905.5608.1|Name=mRNA_L-elsbetiae_contig1905.5608.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2082bp|location=Sequence derived from alignment at L-elsbetiae_contig1905:4163..7309- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCAAGAAGAGAAGGAAGCGCTTCATCGAGCCCTCCAGGAGGCCAC
CGAAACGCTGGGCGACGTCCACTTGAAGGTCGCCGTCGCTCTGGACGAGC
TGGGCTTGTGTGTGCGAAGGGCGGGGCGGCTGGCGGAAGCTGAACAATTC
TTCAGGCAAGCTCTCCAGATAAAGGAGGAAAAGCTGCCGCACAGCGACGC
CGAAGTCGTCTGGACGCTAGAAGGGCTAGGCCGGTGTGTGCGAGAGCAGG
GACGGGCACGGGAGGCGGAAGGGTTGATGAAGCGGGCCCTGCAAATCAGG
GAGGCGAAGCTCGGACCCGCTGGTATGAGCGTCGCGGTGACGACTCATGA
GTTGGCTCGGTGCGTTCGACAAGCGGGACGACCGGAGGAGGCTGAAGAGC
TGTTTAAGCAAGCGCTTCAGATGAAGAATGCGCTCGTCGGACCTGACGAT
ACTAGTGCCGCCGTAACCTTGCACGAGCTCGGTCGGTGTTTGCGAGCAGC
AGGTCGACTGGAGGAGGCGGAAGGCCACCTAAAACGAGCGCTCCTGATAA
AACAAGCTTACCTGAAGATCGACGATCTCGAGATCGCAACGACTCTGCAC
GAACTAGGCCTGTGCGTCCTGCAGATGGGGCGGCTGGGCGAGGCCGACAA
GCTTTTCGAAGACGCGCTCCAGATGAAAAAGGCCAAGCTTGGGGCTGATC
ACCCCCAGGTTGCCGTGACTCTTCACGAGCTAGGTCGGTGCGCACGTGCG
GGGCACCGATTGGCAGAGGCTGAAATGATTTTCAAGCGGGCGCTACAGAT
TAAGGAGACACGCTTGTCTCCACACCACCTTGAAATCCCCTGGACGCTCA
TCGAACTGGGTCGGTGTGTTCGAGAGGCAGGGCGAACTGAAGAGGCTAAG
TCCTTTCTCAAGCGAGCTTTCCAAATCCAGGAGGCAAAGCTGGGATCCGA
CCACGAGAGCATGGCTTGGACTTTGCACGACCTGGATTTGTGTGTCCAAA
CAGCGGGAAAGTCGGGGGAGGTTATTGAGGTCGCCGAGTAGATGAAGCAA
GAAGAGAAGGAAGCGCTTCATCGAGCCCTCCAGGAGGCCACCGAAACGCT
GGGCGACGTCCACTTGAAGGTCGCCGTCGCTCTGGACGAGCTGGGCTTGT
GTGTGCGAAGGGCGGGGCGGCTGGCGGAAGCTGAACAATTCTTCAGGCAA
GCTCTCCAGATAAAGGAGGAAAAGCTGCCGCACAGCGACGCCGAAGTCGT
CTGGACGCTAGAAGGGCTAGGCCGGTGTGTGCGAGAGCAGGGACGGGCAC
GGGAGGCGGAAGGGTTGATGAAGCGGGCCCTGCAAATCAGGGAGGCGAAG
CTCGGACCCGCTGGTATGAGCGTCGCGGTGACGACTCATGAGTTGGCTCG
GTGCGTTCGACAAGCGGGACGACCGGAGGAGGCTGAAGAGCTGTTTAAGC
AAGCGCTTCAGATGAAGAATGCGCTCGTCGGACCTGACGATACTAGTGCC
GCCGTAACCTTGCACGAGCTCGGTCGGTGTTTGCGAGCAGCAGGTCGACT
GGAGGAGGCGGAAGGCCACCTAAAACGAGCGCTCCTGATAAAACAAGCTT
ACCTGAAGATCGACGATCTCGAGATCGCAACGACTCTGCACGAACTAGGC
CTGTGCGTCCTGCAGATGGGGCGGCTGGGCGAGGCCGACAAGCTTTTCGA
AGACGCGCTCCAGATGAAAAAGGCCAAGCTTGGGGCTGATCACCCCCAGG
TTGCCGTGACTCTTCACGAGCTAGGTCGGTGCGCACGTGCGGGGCACCGA
TTGGCAGAGGCTGAAATGATTTTCAAGCGGGCGCTACAGATTAAGGAGAC
ACGCTTGTCTCCACACCACCTTGAAATCCCCTGGACGCTCATCGAACTGG
GTCGGTGTGTTCGAGAGGCAGGGCGAACTGAAGAGGCTAAGTCCTTTCTC
AAGCGAGCTTTCCAAATCCAGGAGGCAAAGCTGGGATCCGACCACGAGAG
CATGGCTTGGACTTTGCACGACCTGGATTTGTGTGTCCAAACAGCGGGAA
AGTCGGGGGAGGTTATTGAGGTCGCCGAGTAG
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