mRNA_L-elsbetiae_contig19039.5603.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19039.5603.1
Unique NamemRNA_L-elsbetiae_contig19039.5603.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19039.5603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19039contigL-elsbetiae_contig19039:171..724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size554
Cds size552
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.7691045-CDS-L-elsbetiae_contig19039:170..7221622815791.7691045-CDS-L-elsbetiae_contig19039:170..722Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19039 171..722 +
1691683105.5625682-CDS-L-elsbetiae_contig19039:170..7221691683105.5625682-CDS-L-elsbetiae_contig19039:170..722Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19039 171..722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19039.5603.1prot_L-elsbetiae_contig19039.5603.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19039 171..722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19039.5603.1

>prot_L-elsbetiae_contig19039.5603.1 ID=prot_L-elsbetiae_contig19039.5603.1|Name=mRNA_L-elsbetiae_contig19039.5603.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=184bp
PSVVGASCACTVRRNSTCFMYSTRQYCAMLQPSGCCHFSFGNLELRRSYV
WEATSATFCVGEIRCIVLRVCGLSSSGGDKSSSCFVAWEIVVVGITDVVG
GCSKKSCSIREAFFEHGGSGAAPPFTRPKKVDGFFYVRFFNVPLRLVMAA
RCTTHPACFASPHIASFTERGSCGVGSRCILLLS
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mRNA from alignment at L-elsbetiae_contig19039:171..724+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19039.5603.1 ID=mRNA_L-elsbetiae_contig19039.5603.1|Name=mRNA_L-elsbetiae_contig19039.5603.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=554bp|location=Sequence derived from alignment at L-elsbetiae_contig19039:171..724+ (Laminarionema elsbetiae ELsaHSoW15)
CCGTCGGTGGTTGGGGCATCCTGCGCTTGCACGGTTAGGCGAAATAGTAC
ATGCTTTATGTACAGTACACGTCAATACTGTGCCATGCTCCAACCGAGTG
GATGCTGCCATTTTTCGTTTGGAAACCTGGAACTTCGTCGTTCATACGTT
TGGGAGGCAACAAGCGCTACTTTTTGTGTAGGAGAGATACGGTGTATTGT
ACTTCGAGTATGTGGTTTATCGAGCAGCGGAGGCGACAAGAGTTCGTCGT
GCTTTGTGGCCTGGGAAATAGTCGTGGTGGGCATCACGGATGTTGTTGGA
GGGTGTAGCAAAAAGTCTTGTTCTATTCGGGAGGCGTTTTTCGAGCACGG
TGGTAGTGGTGCTGCACCACCTTTTACTCGTCCGAAGAAGGTAGACGGCT
TTTTTTATGTTCGATTTTTTAATGTACCATTAAGACTAGTGATGGCTGCA
CGCTGCACGACTCACCCTGCTTGTTTTGCGTCCCCTCACATCGCTTCATT
TACTGAGAGAGGTAGCTGCGGCGTCGGTTCTCGGTGCATCCTCTTGCTTT
CGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19039:171..724+

>mRNA_L-elsbetiae_contig19039.5603.1 ID=mRNA_L-elsbetiae_contig19039.5603.1|Name=mRNA_L-elsbetiae_contig19039.5603.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1104bp|location=Sequence derived from alignment at L-elsbetiae_contig19039:171..724+ (Laminarionema elsbetiae ELsaHSoW15)
CCGTCGGTGGTTGGGGCATCCTGCGCTTGCACGGTTAGGCGAAATAGTAC
ATGCTTTATGTACAGTACACGTCAATACTGTGCCATGCTCCAACCGAGTG
GATGCTGCCATTTTTCGTTTGGAAACCTGGAACTTCGTCGTTCATACGTT
TGGGAGGCAACAAGCGCTACTTTTTGTGTAGGAGAGATACGGTGTATTGT
ACTTCGAGTATGTGGTTTATCGAGCAGCGGAGGCGACAAGAGTTCGTCGT
GCTTTGTGGCCTGGGAAATAGTCGTGGTGGGCATCACGGATGTTGTTGGA
GGGTGTAGCAAAAAGTCTTGTTCTATTCGGGAGGCGTTTTTCGAGCACGG
TGGTAGTGGTGCTGCACCACCTTTTACTCGTCCGAAGAAGGTAGACGGCT
TTTTTTATGTTCGATTTTTTAATGTACCATTAAGACTAGTGATGGCTGCA
CGCTGCACGACTCACCCTGCTTGTTTTGCGTCCCCTCACATCGCTTCATT
TACTGAGAGAGGTAGCTGCGGCGTCGGTTCTCGGTGCATCCTCTTGCTTT
CGCCGTCGGTGGTTGGGGCATCCTGCGCTTGCACGGTTAGGCGAAATAGT
ACATGCTTTATGTACAGTACACGTCAATACTGTGCCATGCTCCAACCGAG
TGGATGCTGCCATTTTTCGTTTGGAAACCTGGAACTTCGTCGTTCATACG
TTTGGGAGGCAACAAGCGCTACTTTTTGTGTAGGAGAGATACGGTGTATT
GTACTTCGAGTATGTGGTTTATCGAGCAGCGGAGGCGACAAGAGTTCGTC
GTGCTTTGTGGCCTGGGAAATAGTCGTGGTGGGCATCACGGATGTTGTTG
GAGGGTGTAGCAAAAAGTCTTGTTCTATTCGGGAGGCGTTTTTCGAGCAC
GGTGGTAGTGGTGCTGCACCACCTTTTACTCGTCCGAAGAAGGTAGACGG
CTTTTTTTATGTTCGATTTTTTAATGTACCATTAAGACTAGTGATGGCTG
CACGCTGCACGACTCACCCTGCTTGTTTTGCGTCCCCTCACATCGCTTCA
TTTACTGAGAGAGGTAGCTGCGGCGTCGGTTCTCGGTGCATCCTCTTGCT
TTCG
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