Homology
BLAST of mRNA_L-elsbetiae_contig19018.5598.1 vs. uniprot
Match:
D7FS69_ECTSI (Vps16_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS69_ECTSI)
HSP 1 Score: 124 bits (312), Expect = 1.150e-32
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 2
Query: 233 QMSAKDPVVPTLRMCNCAGGAISETQLDRAAQAPGTASERGRLVTMGWTDGEMLVMVRERGGVEVRDIM 439
+MSAKD +VPTLR+CNCAGG ISET LD+A QAPGTASERGRL+TMGWTDGEMLVMVRERGGVEVRDIM
Sbjct: 57 KMSAKDSIVPTLRVCNCAGGTISETILDKAVQAPGTASERGRLLTMGWTDGEMLVMVRERGGVEVRDIM 125
BLAST of mRNA_L-elsbetiae_contig19018.5598.1 vs. uniprot
Match:
A0A6H5KVY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY1_9PHAE)
HSP 1 Score: 126 bits (316), Expect = 7.640e-31
Identity = 60/69 (86.96%), Postives = 66/69 (95.65%), Query Frame = 2
Query: 233 QMSAKDPVVPTLRMCNCAGGAISETQLDRAAQAPGTASERGRLVTMGWTDGEMLVMVRERGGVEVRDIM 439
+MSAKD +VPTLR+CNCAGG ISET+LD+A QAPGTASERGRL+TMGWTDGEMLVMVRERGGVEVRDIM
Sbjct: 10 KMSAKDSIVPTLRVCNCAGGTISETRLDKAVQAPGTASERGRLLTMGWTDGEMLVMVRERGGVEVRDIM 78
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19018.5598.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.15e-32 / Id = 86.96 Expect = 7.64e-31 / Id = 86.96 Sequence D7FS69_ECTSI A0A6H5KVY1_9PHAE
Match Name E-value Identity Description
D7FS69_ECTSI 1.150e-32 86.96 Vps16_N domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KVY1_9PHAE 7.640e-31 86.96 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota
Seed ortholog score 125.6
Seed ortholog evalue 9.1e-27
Seed eggNOG ortholog 2880.D7FS69
KEGG ko ko:K20180
KEGG Pathway ko04138,map04138
Hectar predicted targeting category other localisation
GOs GO:0000323,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0006810,GO:0006886,GO:0007275,GO:0008092,GO:0008104,GO:0008150,GO:0009790,GO:0009792,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0030897,GO:0031090,GO:0031338,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032879,GO:0032889,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0035295,GO:0035542,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048565,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055123,GO:0060627,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:0099023
EggNOG free text desc. regulation of vacuole fusion, non-autophagic
EggNOG OGs KOG2280@1,KOG2280@2759
Ec32 ortholog description Vacuolar protein sorting-associated protein 16
Ec32 ortholog Ec-01_000770.1
COG Functional cat. S
Best tax level Eukaryota
Best eggNOG OG NA|NA|NA
BRITE ko00000,ko00001,ko04131
Exons 1
Model size 439
Cds size 204
Stop 0
Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815791.2752428-UTR-L-elsbetiae_contig19018:2338..2573 1622815791.2752428-UTR-L-elsbetiae_contig19018:2338..2573 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig19018 2339..2573 +
1691683105.206559-UTR-L-elsbetiae_contig19018:2338..2573 1691683105.206559-UTR-L-elsbetiae_contig19018:2338..2573 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig19018 2339..2573 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815791.2886012-CDS-L-elsbetiae_contig19018:2573..2777 1622815791.2886012-CDS-L-elsbetiae_contig19018:2573..2777 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig19018 2574..2777 +
1691683105.2213001-CDS-L-elsbetiae_contig19018:2573..2777 1691683105.2213001-CDS-L-elsbetiae_contig19018:2573..2777 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig19018 2574..2777 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig19018.5598.1
>prot_L-elsbetiae_contig19018.5598.1 ID=prot_L-elsbetiae_contig19018.5598.1|Name=mRNA_L-elsbetiae_contig19018.5598.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
MSAKDPVVPTLRMCNCAGGAISETQLDRAAQAPGTASERGRLVTMGWTDG EMLVMVRERGGVEVRDIM back to top mRNA from alignment at L-elsbetiae_contig19018:2339..2777+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19018.5598.1 ID=mRNA_L-elsbetiae_contig19018.5598.1|Name=mRNA_L-elsbetiae_contig19018.5598.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=439bp|location=Sequence derived from alignment at L-elsbetiae_contig19018:2339..2777+ (Laminarionema elsbetiae ELsaHSoW15)GTCGGTGGTGCTGCAGTCAGCGCATGTTGTGGCATTTCCTTCAACGAAAA
GAGTGAGAACCACAGCACCACACACCGCCGTGGCTGTGTACGTATGTGAC
CACCAAAGATAACACAGAACGCCCGCTAACTCGCACAGCGAAATGCCTTG
CTTTCGCCTGGCTTTCGCCTTGCTTTCGCCTTGCTCTCGCCTTGCGCTTT
CGACCCCTCCCAAACCAAACCTAACCTAACCTCAG ATGTCCGCAAAGGAC
CCCGTCGTCCCGACCCTGCGGATGTGCAACTGCGCCGGCGGGGCTATCTC
GGAAACCCAGCTCGACAGGGCGGCCCAGGCGCCCGGCACGGCGTCCGAGC
GGGGGCGGCTTGTGACCATGGGATGGACGGACGGAGAGATGCTGGTCATG
GTCAGGGAGAGGGGTGGGGTCGAGGTTCGAGACATCATG back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig19018:2339..2777+
>mRNA_L-elsbetiae_contig19018.5598.1 ID=mRNA_L-elsbetiae_contig19018.5598.1|Name=mRNA_L-elsbetiae_contig19018.5598.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig19018:2339..2777+ (Laminarionema elsbetiae ELsaHSoW15) ATGTCCGCAAAGGACCCCGTCGTCCCGACCCTGCGGATGTGCAACTGCGC CGGCGGGGCTATCTCGGAAACCCAGCTCGACAGGGCGGCCCAGGCGCCCG GCACGGCGTCCGAGCGGGGGCGGCTTGTGACCATGGGATGGACGGACGGA GAGATGCTGGTCATGGTCAGGGAGAGGGGTGGGGTCGAGGTTCGAGACAT CATGATGTCCGCAAAGGACCCCGTCGTCCCGACCCTGCGGATGTGCAACT GCGCCGGCGGGGCTATCTCGGAAACCCAGCTCGACAGGGCGGCCCAGGCG CCCGGCACGGCGTCCGAGCGGGGGCGGCTTGTGACCATGGGATGGACGGA CGGAGAGATGCTGGTCATGGTCAGGGAGAGGGGTGGGGTCGAGGTTCGAG ACATCATG back to top