mRNA_L-elsbetiae_contig1901.5597.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1901.5597.1
Unique NamemRNA_L-elsbetiae_contig1901.5597.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1901.5597.1 vs. uniprot
Match: D7FLL8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL8_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 2.400e-53
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 1
Query:   10 GASMIGGLLFTSLASANFGVNIKTWRLFADASNDIGLALEMLAPLPAFREGGRFLRLICVASVFKAACGVAGGATGAAITEHWAVDNNIADIGAK 294
            GASMIGGLLFTS+ASANFGVNIKTWRLFAD SNDIGLALEMLAPLPAFREGGRFLRLIC+ASVFKAACGVAGGATGAAITEHWA+DNNIADIGAK
Sbjct:  267 GASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAK 361          
BLAST of mRNA_L-elsbetiae_contig1901.5597.1 vs. uniprot
Match: A0A813KE75_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KE75_POLGL)

HSP 1 Score: 107 bits (268), Expect = 3.630e-25
Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 1
Query:   10 GASMIGGLLFTSLASANFGVNIKTWRLFADASNDIGLALEMLAPLPAFREGGRFLRLICVASVFKAACGVAGGATGAAITEHWAVDNNIADIGAK 294
            G+ M+GGL F +  S  F VN+KTWRLFAD +N++GL L++LAP+     G  FL +ICVA+VFKA CGV+ GAT AA+T H+A+ +N+AD+ AK
Sbjct:  144 GSGMVGGLGFATFCSVGFDVNVKTWRLFADVANNVGLTLDLLAPM----AGDYFLLVICVANVFKAMCGVSAGATKAALTAHFALRDNMADVQAK 234          
BLAST of mRNA_L-elsbetiae_contig1901.5597.1 vs. uniprot
Match: A0A813HLD8_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HLD8_POLGL)

HSP 1 Score: 107 bits (268), Expect = 7.030e-25
Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 1
Query:   10 GASMIGGLLFTSLASANFGVNIKTWRLFADASNDIGLALEMLAPLPAFREGGRFLRLICVASVFKAACGVAGGATGAAITEHWAVDNNIADIGAK 294
            G+ M+GGL F +  S  F VN+KTWRLFAD +N++GL L++LAP+     G  FL +ICVA+VFKA CGV+ GAT AA+T H+A+ +N+AD+ AK
Sbjct:   79 GSGMVGGLGFATFCSVGFDVNVKTWRLFADVANNVGLTLDLLAPM----AGDYFLLVICVANVFKAMCGVSAGATKAALTAHFALRDNMADVQAK 169          
BLAST of mRNA_L-elsbetiae_contig1901.5597.1 vs. uniprot
Match: A0A482SIE4_9ARCH (RUS1 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SIE4_9ARCH)

HSP 1 Score: 101 bits (252), Expect = 7.550e-23
Identity = 59/113 (52.21%), Postives = 73/113 (64.60%), Query Frame = 1
Query:   10 GASMIGGLLFTSLASANFGVNIKTWRLFADASNDIGLALEMLAPLPAFREGGRFLRLICVASVFKAACGVAGGATGAAITEHWAVD-NNIADIGAKVSFLVLLVKFGGYSSAL 345
            GAS+IGGLLFTSL+S NF  NIK WRLFAD+ N++G+ L+ML P         FL L+CV S  KA CGVA GAT AAI+ HW     N+ADI AK +    +V   G + +L
Sbjct:  165 GASLIGGLLFTSLSSYNFVQNIKFWRLFADSINNVGITLDMLTPYFPLH----FLPLVCVGSTCKALCGVAAGATNAAISMHWGEKYGNVADILAKNNAQHTVVSLCGLAVSL 273          
BLAST of mRNA_L-elsbetiae_contig1901.5597.1 vs. uniprot
Match: A0A7S2TJN0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TJN0_9EUKA)

HSP 1 Score: 96.7 bits (239), Expect = 7.690e-23
Identity = 52/107 (48.60%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   10 GASMIGGLLFTSLASANFGVNIKTWRLFADASNDIGLALEMLAPLPAFREGGRFLRLICVASVFKAACGVAGGATGAAITEHWAVDNNIADIGAKVSFLVLLVKFGG 330
            G  M+G LLF SL    F  N+K+WRLFAD  N++GL L+M+APL        FL ++C A++ KA CGVA GAT AA+T H+A++ N AD+ AK S   L V   G
Sbjct:   79 GFGMVGSLLFASLCGPYFDTNVKSWRLFADLINNVGLFLDMIAPLTQ----EYFLLVVCFATICKAMCGVAAGATKAALTAHFALNGNNADVQAKESSQELAVTLMG 181          
BLAST of mRNA_L-elsbetiae_contig1901.5597.1 vs. uniprot
Match: W7U3D2_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3D2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 4.230e-22
Identity = 54/95 (56.84%), Postives = 67/95 (70.53%), Query Frame = 1
Query:   10 GASMIGGLLFTSLASANFGVNIKTWRLFADASNDIGLALEMLAPLPAFREGGRFLRLICVASVFKAACGVAGGATGAAITEHWAVDNNIADIGAK 294
            GASM+ GL+FTS  S NFGVN K+WRLFAD   DIG+ L+MLAPL  F +   FL  IC+ASV K+ CG+A GA+   I EH A  NN+A++ AK
Sbjct:  203 GASMMSGLVFTSFLSTNFGVNAKSWRLFADFMVDIGITLDMLAPL--FPKN--FLLCICLASVCKSLCGIAAGASNGNIVEHMARTNNLAEVLAK 293          
BLAST of mRNA_L-elsbetiae_contig1901.5597.1 vs. uniprot
Match: D7FQ06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ06_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 9.050e-21
Identity = 56/119 (47.06%), Postives = 74/119 (62.18%), Query Frame = 1
Query:   10 GASMIGGLLFTSLASANFGVNIKTWRLFADASNDIGLALEMLAPLPAFREGGRFLRLICVASVFKAACGVAGGATGAAITEHWAVDNNIADIGAK---------VSFLVLLVKFGGYSS 339
            G  MIG LLF+  AS++   NIK WRLFAD +ND+GL L+++AP+  FR  G F  +  +A+VFKA CGVA G T  +IT H+A+  N+ADI AK         V  ++L VK   Y S
Sbjct:  134 GFGMIGSLLFSYAASSHMDSNIKEWRLFADIANDVGLTLDLVAPV--FR--GNFAVVSSLATVFKALCGVAAGCTKTSITSHFALKQNMADISAKENAQETAVNVCGMLLGVKVASYLS 248          
BLAST of mRNA_L-elsbetiae_contig1901.5597.1 vs. uniprot
Match: A0A7S2JJT8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JJT8_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 1.470e-19
Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = 1
Query:   10 GASMIGGLLFTSLASANFGVNIKTWRLFADASNDIGLALEMLAPLPAFREGGRFLRLICVASVFKAACGVAGGATGAAITEHWAVDNNIADIGAK 294
            G  M G L+F+ L    F  N+K WRLFAD  ND+GL L+MLAPL     G  F+ +  + +  K  CG+  GAT A+IT H+A+ NN+AD+ AK
Sbjct:  140 GVGMFGSLVFSYLVGTGFDRNVKEWRLFADIINDLGLTLDMLAPLAGPAGGTNFMVVAALGACCKTICGMTAGATRASITNHFALRNNLADVSAK 234          
BLAST of mRNA_L-elsbetiae_contig1901.5597.1 vs. uniprot
Match: R1DHG9_EMIHU (Uncharacterized protein (Fragment) n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DHG9_EMIHU)

HSP 1 Score: 88.6 bits (218), Expect = 6.740e-19
Identity = 45/95 (47.37%), Postives = 57/95 (60.00%), Query Frame = 1
Query:   10 GASMIGGLLFTSLASANFGVNIKTWRLFADASNDIGLALEMLAPLPAFREGGRFLRLICVASVFKAACGVAGGATGAAITEHWAVDNNIADIGAK 294
            G  M G LLF SL    F  N+K WRLFAD  ND+GL L MLAP+     G RF  +  + S   + CG+  GAT A+IT H+A+  N+AD+ AK
Sbjct:  122 GFGMCGSLLFASLVGVGFDENVKEWRLFADLINDVGLTLNMLAPM----AGERFFLVAALGSTCTSICGMVAGATRASITAHFALSGNLADVSAK 212          
BLAST of mRNA_L-elsbetiae_contig1901.5597.1 vs. uniprot
Match: A0A0G4IXP7_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IXP7_PLABS)

HSP 1 Score: 89.7 bits (221), Expect = 1.080e-18
Identity = 50/114 (43.86%), Postives = 66/114 (57.89%), Query Frame = 1
Query:    1 YLKGASMIGGLLFTSLASANFGVNIKTWRLFADASNDIGLALEMLAPLPAFREGGRFLRLICVASVFKAACGVAGGATGAAITEHWAVDNN----IADIGAKVSFLVLLVKFGG 330
            +L G SM+GG+LF    S +FG + KTWRLFAD  ND+GL L M AP      G  FL + C+ S+  A CGVA GAT AAIT+H+    +    ++DI +K      +V   G
Sbjct:  119 FLHGMSMLGGVLFAFRTSTDFGADPKTWRLFADCVNDVGLTLTMAAPA----TGRLFLLVACLGSICSAVCGVAAGATKAAITQHFCRQRSNSALVSDIYSKEGIQETIVSITG 228          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1901.5597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLL8_ECTSI2.400e-5395.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A813KE75_POLGL3.630e-2554.74Hypothetical protein n=3 Tax=Polarella glacialis T... [more]
A0A813HLD8_POLGL7.030e-2554.74Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A482SIE4_9ARCH7.550e-2352.21RUS1 family protein n=1 Tax=archaeon TaxID=1906665... [more]
A0A7S2TJN0_9EUKA7.690e-2348.60Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
W7U3D2_9STRA4.230e-2256.84Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
D7FQ06_ECTSI9.050e-2147.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2JJT8_9EUKA1.470e-1946.32Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
R1DHG9_EMIHU6.740e-1947.37Uncharacterized protein (Fragment) n=3 Tax=Emilian... [more]
A0A0G4IXP7_PLABS1.080e-1843.86Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1901contigL-elsbetiae_contig1901:21969..22720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.0
Seed ortholog evalue2.9e-43
Seed eggNOG ortholog2880.D7FLL8
Preferred nameC16orf58
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to UV-B
EggNOG OGsKOG4249@1,KOG4249@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size345
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1901.5597.1prot_L-elsbetiae_contig1901.5597.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1901 21987..22720 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.2118652-UTR-L-elsbetiae_contig1901:21968..219861622815791.2118652-UTR-L-elsbetiae_contig1901:21968..21986Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1901 21969..21986 +
1691683105.1764252-UTR-L-elsbetiae_contig1901:21968..219861691683105.1764252-UTR-L-elsbetiae_contig1901:21968..21986Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1901 21969..21986 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.222885-CDS-L-elsbetiae_contig1901:21986..220461622815791.222885-CDS-L-elsbetiae_contig1901:21986..22046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1901 21987..22046 +
1691683105.187314-CDS-L-elsbetiae_contig1901:21986..220461691683105.187314-CDS-L-elsbetiae_contig1901:21986..22046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1901 21987..22046 +
1622815791.2374878-CDS-L-elsbetiae_contig1901:22453..227201622815791.2374878-CDS-L-elsbetiae_contig1901:22453..22720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1901 22454..22720 +
1691683105.1961064-CDS-L-elsbetiae_contig1901:22453..227201691683105.1961064-CDS-L-elsbetiae_contig1901:22453..22720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1901 22454..22720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1901.5597.1

>prot_L-elsbetiae_contig1901.5597.1 ID=prot_L-elsbetiae_contig1901.5597.1|Name=mRNA_L-elsbetiae_contig1901.5597.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MIGGLLFTSLASANFGVNIKTWRLFADASNDIGLALEMLAPLPAFREGGR
FLRLICVASVFKAACGVAGGATGAAITEHWAVDNNIADIGAKVSFLVLLV
KFGGYSSAL
back to top

mRNA from alignment at L-elsbetiae_contig1901:21969..22720+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1901.5597.1 ID=mRNA_L-elsbetiae_contig1901.5597.1|Name=mRNA_L-elsbetiae_contig1901.5597.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=752bp|location=Sequence derived from alignment at L-elsbetiae_contig1901:21969..22720+ (Laminarionema elsbetiae ELsaHSoW15)
TATTTAAAAGGTGCGAGTATGATCGGTGGGCTCCTGTTCACCTCCTTGGC GTCAGCCAACTTCGGCGTCAACATCAAAGTGAGTACAACTCCGTTCGATC ACGCCTGATACGGGTGACAGCGTGACAGTACCCTCGATGGTAGGCACTAG CTTCCTCCGATCGAGCTCACTGCGTACAACGACGGGCGAGGTAGATTTTT TCGTCTGCGTGCCTTGGGCGGGCTGGTTGATCTCCGAACGGCGTGAGGAC GATAACGCCTTCTGACTCGTCGTTTAAGATGCCGCTCCGTTTGTTTGGCG GTAAAGTTGGGGTCACCGATGTTTCAATCATTGCACAAGAATAAACGAAA TGAACATCAGAATACTCCCACCACGTGCGCGGCAAGCTGTGAAAACCAAC GCTCACGACACCGCTCACGACACCGCTCACGCTGCCGATTTCTCCCTCCT CGCGTACGCTGCCTACTCTGTTTTTTGTTTTGCAGACTTGGCGGCTGTTC GCAGACGCCTCGAACGACATCGGCCTCGCCCTCGAGATGCTCGCGCCTCT GCCGGCTTTCCGGGAGGGGGGTCGCTTCTTGCGTCTCATCTGCGTGGCCT CTGTCTTCAAGGCTGCGTGTGGGGTCGCCGGCGGGGCGACCGGGGCAGCG ATAACTGAGCACTGGGCGGTGGACAATAACATTGCTGACATCGGCGCAAA GGTATCATTTTTGGTACTGTTGGTAAAATTCGGGGGTTATAGTTCTGCGT TG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1901:21969..22720+

>mRNA_L-elsbetiae_contig1901.5597.1 ID=mRNA_L-elsbetiae_contig1901.5597.1|Name=mRNA_L-elsbetiae_contig1901.5597.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig1901:21969..22720+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCGGTGGGCTCCTGTTCACCTCCTTGGCGTCAGCCAACTTCGGCGT
CAACATCAAAATGATCGGTGGGCTCCTGTTCACCTCCTTGGCGTCAGCCA
ACTTCGGCGTCAACATCAAAACTTGGCGGCTGTTCGCAGACGCCTCGAAC
GACATCGGCCTCGCCCTCGAGATGCTCGCGCCTCTGCCGGCTTTCCGGGA
GGGGGGTCGCTTCTTGCGTCTCATCTGCGTGGCCTCTGTCTTCAAGGCTG
CGTGTGGGGTCGCCGGCGGGGCGACCGGGGCAGCGATAACTGAGCACTGG
GCGGTGGACAATAACATTGCTGACATCGGCGCAAAGGTATCATTTTTGGT
ACTGTTGGTAAAATTCGGGGGTTATAGTTCTGCGTTGACTTGGCGGCTGT
TCGCAGACGCCTCGAACGACATCGGCCTCGCCCTCGAGATGCTCGCGCCT
CTGCCGGCTTTCCGGGAGGGGGGTCGCTTCTTGCGTCTCATCTGCGTGGC
CTCTGTCTTCAAGGCTGCGTGTGGGGTCGCCGGCGGGGCGACCGGGGCAG
CGATAACTGAGCACTGGGCGGTGGACAATAACATTGCTGACATCGGCGCA
AAGGTATCATTTTTGGTACTGTTGGTAAAATTCGGGGGTTATAGTTCTGC
GTTG
back to top