mRNA_L-elsbetiae_contig19008.5595.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19008.5595.1
Unique NamemRNA_L-elsbetiae_contig19008.5595.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19008.5595.1 vs. uniprot
Match: D7FWF0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWF0_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 3.220e-66
Identity = 170/341 (49.85%), Postives = 197/341 (57.77%), Query Frame = 1 
Query:  493 IVAAAEAWCGAEASSLKRDAQMATKRSWDDFENDNSGXXXXXXXXXXXXXAGV------------TTTGLGGNGCGSSVQAGPGGESPPGXXXXXXXXXXXXXXXXXXXXXXXXADCC--RPRAPTTL--PVTRMPESV-------------------EAPEVAEARAALEEARELMGVNLPSLDKGP---EADCVLCHIPRGAFLRAETGKK-LGWCHVLCALSKGLVIEDRVVKTRGFLRGDGTSNCEFCKKSSGGLIACSFEGCGIRFHPPCGKAHGCTAARGPHVHPRDWSARCPKH-----ARAAAA---ASKGPVPGAATTGP-----MPVKEMY 1359
            IVAAAEAWCG EAS LKRDAQ A KRSWDDFEN  +G      XXXXXXX               T  G GG  C S+   G G ++P  XXXXXX                  A       R+P T   P  +   S                    + PEV+ ARAALEEA E +GV+LPSLDKGP   EADC+LCH+PRGA LRAE G K LGWCH LCA SKGL+IEDRVVKTRG ++GDG S C FCK++ GG+I CS + C + FHP CGK  G +A RGPH+HP  W+A CPKH     ARAAAA   A+KGP  G  ++       MPVKE+Y
Sbjct:  188 IVAAAEAWCGVEASRLKRDAQQAKKRSWDDFENGGNGSIGTAEXXXXXXXXXAVDIGTAEGARSSTARGSGGETCSSNGNLGGGLKAPXXXXXXXXNGWQRSAETPSPTPSSCAASASDLSARSPATCSPPGEQRIASXXXXXXXXXXXXXXXXXXXXDTPEVSAARAALEEAEECVGVDLPSLDKGPPDAEADCILCHVPRGALLRAERGTKGLGWCHCLCAFSKGLLIEDRVVKTRGRIKGDG-STCGFCKRTGGGIIECSEKDCKVTFHPLCGKPWGGSAVRGPHLHPDQWTAWCPKHSGGAAARAAAARGLAAKGPFMGGGSSSDGKAMVMPVKEVY 527
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BLAST of mRNA_L-elsbetiae_contig19008.5595.1 vs. uniprot
Match: A0A6H5JI95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI95_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 3.380e-63
Identity = 161/340 (47.35%), Postives = 187/340 (55.00%), Query Frame = 1 
Query:  493 IVAAAEAWCGAEASSLKRDAQMATKRSWDDFENDNSGXXXXXXXXXXXXXAGV---------------TTTGLGGNGCGSSVQAGPGGESPPGXXXXXXXXXXXXXXXXXXXXXXXXADCCRPRAPTTLPVTRMPESVEA-------------------PEVAEARAALEEARELMGVNLPSLDKGP---EADCVLCHIPRGAFLRAETGKK-LGWCHVLCALSKGLVIEDRVVKTRGFLRGDGTSNCEFCKKSSGGLIACSFEGCGIRFHPPCGKAHGCTAARGPHVHPRDWSARCPKH-----ARAAAA---ASKGPVPGAATTGP-----MPVKEMY 1359
            IVAAAEAWCG EAS LKRDAQ A KRSWDDFEN  +G       XXXXXX                  T  G GG  C S+   G   ++PP                             R  A  + P  +   S  A                   PEVA ARAALEEA E +GV+LPSLDKGP   EADC+LCH+PRGA LRAE G K L WCH LCA SKGL+IEDRVVKTRG ++GDG S C FCK++ GG+I CS + C + FHP CGK  G +A RGPH+HP  W+A CPKH     ARAAAA   ++KGP  G  ++       MPVKE+Y
Sbjct:  674 IVAAAEAWCGVEASRLKRDAQQAKKRSWDDFENGGNGSIGAAEAXXXXXXXXXXXXVDRGAAEGGRSSTAQGSGGETCSSNGNLGSRFKAPPPPPNGWQRATETPSPTPSSCAASASDLMARSPATCSPPGEQRIASAPAXXXXXXXXXXXXXXXXXXXPEVAAARAALEEAEECVGVDLPSLDKGPPDAEADCILCHVPRGALLRAERGTKGLAWCHCLCAFSKGLLIEDRVVKTRGRIKGDG-STCGFCKRTGGGIIECSEKECKVTFHPLCGKPWGGSAVRGPHLHPDQWTAWCPKHSGGAAARAAAARGLSAKGPFMGGGSSSDGQAMVMPVKEVY 1012
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19008.5595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWF0_ECTSI3.220e-6649.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI95_9PHAE3.380e-6347.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19008contigL-elsbetiae_contig19008:901..2786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPHD-type zinc finger protein
Ec32 ortholog descriptionZinc finger, FYVE/PHD-type
Ec32 orthologEc-09_003920.1
Exons2
Model size1365
Cds size1365
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.9119513-CDS-L-elsbetiae_contig19008:900..11821622815790.9119513-CDS-L-elsbetiae_contig19008:900..1182Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19008 901..1182 -
1691683104.956868-CDS-L-elsbetiae_contig19008:900..11821691683104.956868-CDS-L-elsbetiae_contig19008:900..1182Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19008 901..1182 -
1622815790.9258125-CDS-L-elsbetiae_contig19008:1703..27861622815790.9258125-CDS-L-elsbetiae_contig19008:1703..2786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19008 1704..2786 -
1691683104.9679246-CDS-L-elsbetiae_contig19008:1703..27861691683104.9679246-CDS-L-elsbetiae_contig19008:1703..2786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19008 1704..2786 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19008.5595.1prot_L-elsbetiae_contig19008.5595.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19008 901..2786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19008.5595.1

>prot_L-elsbetiae_contig19008.5595.1 ID=prot_L-elsbetiae_contig19008.5595.1|Name=mRNA_L-elsbetiae_contig19008.5595.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=455bp
AQKRLDAATAEAGASPSPSVKVEGAEATAHGAAVAPSSPSAATAAGAKMP
AGKRRKICPSNNPSTTEPPPHAVTASCGAAPTTAGRSFAVGAATTAKLPP
TPNGSRGSGAGGACAEKAVHPSPAEQAAASSKGESAAAAATGGSAAGSQA
LAARGREDRRGAAGIVAAAEAWCGAEASSLKRDAQMATKRSWDDFENDNS
GGGGAKAQAALADAAGVTTTGLGGNGCGSSVQAGPGGESPPGAGSGGGQQ
SQGKPPAAAAAAAASSADCCRPRAPTTLPVTRMPESVEAPEVAEARAALE
EARELMGVNLPSLDKGPEADCVLCHIPRGAFLRAETGKKLGWCHVLCALS
KGLVIEDRVVKTRGFLRGDGTSNCEFCKKSSGGLIACSFEGCGIRFHPPC
GKAHGCTAARGPHVHPRDWSARCPKHARAAAAASKGPVPGAATTGPMPVK
EMYT*
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mRNA from alignment at L-elsbetiae_contig19008:901..2786-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19008.5595.1 ID=mRNA_L-elsbetiae_contig19008.5595.1|Name=mRNA_L-elsbetiae_contig19008.5595.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1886bp|location=Sequence derived from alignment at L-elsbetiae_contig19008:901..2786- (Laminarionema elsbetiae ELsaHSoW15)
GCACAAAAGCGCCTGGACGCCGCCACTGCCGAAGCAGGGGCGTCACCGTC
GCCGTCGGTTAAGGTGGAGGGCGCGGAAGCTACGGCGCACGGCGCGGCCG
TTGCGCCTAGTTCCCCCTCCGCCGCCACCGCCGCCGGCGCCAAGATGCCG
GCAGGGAAGAGGCGAAAGATCTGCCCGAGCAACAACCCCTCGACGACGGA
GCCGCCGCCGCACGCCGTGACCGCATCCTGCGGGGCGGCTCCAACAACGG
CGGGGCGGTCTTTCGCGGTCGGAGCGGCGACAACGGCGAAGCTCCCGCCG
ACTCCGAACGGCTCGCGGGGCAGTGGTGCCGGTGGTGCGTGCGCCGAGAA
GGCCGTTCACCCGTCGCCGGCGGAGCAGGCCGCGGCATCGTCGAAGGGGG
AGTCGGCGGCGGCAGCAGCGACGGGCGGAAGCGCAGCAGGAAGCCAAGCC
CTCGCGGCGAGAGGACGAGAGGACAGAAGAGGAGCGGCCGGGATTGTGGC
GGCCGCGGAGGCTTGGTGCGGGGCCGAGGCGTCGAGCCTCAAGCGCGACG
CTCAGATGGCGACGAAGCGGAGCTGGGACGACTTCGAGAACGACAACAGC
GGCGGCGGCGGCGCCAAGGCGCAGGCAGCGCTGGCAGACGCGGCGGGAGT
AACAACAACCGGCCTCGGCGGTAACGGCTGCGGCAGTAGCGTCCAGGCCG
GCCCCGGGGGCGAGTCGCCACCTGGAGCTGGGAGCGGCGGCGGGCAACAA
AGCCAAGGCAAGCCACCGGCGGCAGCGGCGGCGGCGGCGGCGTCTTCTGC
TGATTGTTGCCGCCCGAGGGCACCGACCACCCTGCCGGTAACCCGCATGC
CCGAGAGCGTGGAGGCGCCGGAGGTGGCGGAAGCGAGGGCGGCGCTCGAG
GAGGCGCGGGAGCTGATGGGCGTGAACCTGCCGTCGCTGGACAAGGGACC
GGAGGCGGACTGCGTGCTGTGCCACATCCCCCGCGGAGCGTTCCTGCGGG
CGGAGACTGGCAAGAAGCTCGGGTGGTGCCACGTCTTGTGCGCGTTGTCG
AAGGGGCTCGTGATCGAAGACAGGGTGGTGAAGGTGGGTGGGTGCCGTTT
GGGGGAAGCGAGGAGGGTCGGTCGGCGGTCTTGGTTTGCGCTCGGGGGTT
TTCGAAAGAATAATTTATGTGTGTATGTACTTCGAAGTAGGTGCATACTG
CGTTGATATTTAAATATTTATAGGTTTGCCCAACGCGATCAATTTTATTC
TGGATTCGCTTTCACTTCGTATTTCCTTTTTTTTTTTTTGCGCGGGGGTA
TGTATGTACCGGGATGTATATGTTATATTCTGTTTTGCAGTCTCACAATG
GAGCACCAGCTAATTTTCCTTTGTGTGCGCGGCACTCGATCGGGCCACTA
CTGCTGTTGTTTCTGTAGGTCGCCCGTGATCGGAAAGTGGCAACAAGCTA
AACAACCAGCCCTCTTTGTTTCCGCTCGTCGGATGCACCCTCCTGCGCCC
TCGCTGCCATACGCCGCTCCGCCTCCTCCTGCTGCTGTCGCAACCCCGCA
ACCGAACGCCCCCTCTCTCTCGACCCGGACTCGGACACGGATACGACACG
CCAGACGAGGGGGTTCCTAAGGGGAGACGGCACTTCTAATTGCGAGTTCT
GCAAGAAGTCTAGCGGCGGGCTCATCGCCTGCTCTTTCGAAGGCTGCGGC
ATCCGCTTCCACCCGCCGTGCGGCAAGGCCCACGGGTGCACCGCCGCCCG
CGGCCCGCACGTCCACCCCCGAGACTGGTCGGCCCGGTGCCCGAAGCACG
CGCGAGCCGCCGCGGCGGCGTCGAAGGGGCCGGTACCGGGAGCGGCGACG
ACCGGCCCGATGCCTGTTAAGGAGATGTACACGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19008:901..2786-

>mRNA_L-elsbetiae_contig19008.5595.1 ID=mRNA_L-elsbetiae_contig19008.5595.1|Name=mRNA_L-elsbetiae_contig19008.5595.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2730bp|location=Sequence derived from alignment at L-elsbetiae_contig19008:901..2786- (Laminarionema elsbetiae ELsaHSoW15)
GCACAAAAGCGCCTGGACGCCGCCACTGCCGAAGCAGGGGCGTCACCGTC
GCCGTCGGTTAAGGTGGAGGGCGCGGAAGCTACGGCGCACGGCGCGGCCG
TTGCGCCTAGTTCCCCCTCCGCCGCCACCGCCGCCGGCGCCAAGATGCCG
GCAGGGAAGAGGCGAAAGATCTGCCCGAGCAACAACCCCTCGACGACGGA
GCCGCCGCCGCACGCCGTGACCGCATCCTGCGGGGCGGCTCCAACAACGG
CGGGGCGGTCTTTCGCGGTCGGAGCGGCGACAACGGCGAAGCTCCCGCCG
ACTCCGAACGGCTCGCGGGGCAGTGGTGCCGGTGGTGCGTGCGCCGAGAA
GGCCGTTCACCCGTCGCCGGCGGAGCAGGCCGCGGCATCGTCGAAGGGGG
AGTCGGCGGCGGCAGCAGCGACGGGCGGAAGCGCAGCAGGAAGCCAAGCC
CTCGCGGCGAGAGGACGAGAGGACAGAAGAGGAGCGGCCGGGATTGTGGC
GGCCGCGGAGGCTTGGTGCGGGGCCGAGGCGTCGAGCCTCAAGCGCGACG
CTCAGATGGCGACGAAGCGGAGCTGGGACGACTTCGAGAACGACAACAGC
GGCGGCGGCGGCGCCAAGGCGCAGGCAGCGCTGGCAGACGCGGCGGGAGT
AACAACAACCGGCCTCGGCGGTAACGGCTGCGGCAGTAGCGTCCAGGCCG
GCCCCGGGGGCGAGTCGCCACCTGGAGCTGGGAGCGGCGGCGGGCAACAA
AGCCAAGGCAAGCCACCGGCGGCAGCGGCGGCGGCGGCGGCGTCTTCTGC
TGATTGTTGCCGCCCGAGGGCACCGACCACCCTGCCGGTAACCCGCATGC
CCGAGAGCGTGGAGGCGCCGGAGGTGGCGGAAGCGAGGGCGGCGCTCGAG
GAGGCGCGGGAGCTGATGGGCGTGAACCTGCCGTCGCTGGACAAGGGACC
GGAGGCGGACTGCGTGCTGTGCCACATCCCCCGCGGAGCGTTCCTGCGGG
CGGAGACTGGCAAGAAGCTCGGGTGGTGCCACGTCTTGTGCGCGTTGTCG
AAGGGGCTCGTGATCGAAGACAGGGTGGTGAAGGCACAAAAGCGCCTGGA
CGCCGCCACTGCCGAAGCAGGGGCGTCACCGTCGCCGTCGGTTAAGGTGG
AGGGCGCGGAAGCTACGGCGCACGGCGCGGCCGTTGCGCCTAGTTCCCCC
TCCGCCGCCACCGCCGCCGGCGCCAAGATGCCGGCAGGGAAGAGGCGAAA
GATCTGCCCGAGCAACAACCCCTCGACGACGGAGCCGCCGCCGCACGCCG
TGACCGCATCCTGCGGGGCGGCTCCAACAACGGCGGGGCGGTCTTTCGCG
GTCGGAGCGGCGACAACGGCGAAGCTCCCGCCGACTCCGAACGGCTCGCG
GGGCAGTGGTGCCGGTGGTGCGTGCGCCGAGAAGGCCGTTCACCCGTCGC
CGGCGGAGCAGGCCGCGGCATCGTCGAAGGGGGAGTCGGCGGCGGCAGCA
GCGACGGGCGGAAGCGCAGCAGGAAGCCAAGCCCTCGCGGCGAGAGGACG
AGAGGACAGAAGAGGAGCGGCCGGGATTGTGGCGGCCGCGGAGGCTTGGT
GCGGGGCCGAGGCGTCGAGCCTCAAGCGCGACGCTCAGATGGCGACGAAG
CGGAGCTGGGACGACTTCGAGAACGACAACAGCGGCGGCGGCGGCGCCAA
GGCGCAGGCAGCGCTGGCAGACGCGGCGGGAGTAACAACAACCGGCCTCG
GCGGTAACGGCTGCGGCAGTAGCGTCCAGGCCGGCCCCGGGGGCGAGTCG
CCACCTGGAGCTGGGAGCGGCGGCGGGCAACAAAGCCAAGGCAAGCCACC
GGCGGCAGCGGCGGCGGCGGCGGCGTCTTCTGCTGATTGTTGCCGCCCGA
GGGCACCGACCACCCTGCCGGTAACCCGCATGCCCGAGAGCGTGGAGGCG
CCGGAGGTGGCGGAAGCGAGGGCGGCGCTCGAGGAGGCGCGGGAGCTGAT
GGGCGTGAACCTGCCGTCGCTGGACAAGGGACCGGAGGCGGACTGCGTGC
TGTGCCACATCCCCCGCGGAGCGTTCCTGCGGGCGGAGACTGGCAAGAAG
CTCGGGTGGTGCCACGTCTTGTGCGCGTTGTCGAAGGGGCTCGTGATCGA
AGACAGGGTGGTGAAGACGAGGGGGTTCCTAAGGGGAGACGGCACTTCTA
ATTGCGAGTTCTGCAAGAAGTCTAGCGGCGGGCTCATCGCCTGCTCTTTC
GAAGGCTGCGGCATCCGCTTCCACCCGCCGTGCGGCAAGGCCCACGGGTG
CACCGCCGCCCGCGGCCCGCACGTCCACCCCCGAGACTGGTCGGCCCGGT
GCCCGAAGCACGCGCGAGCCGCCGCGGCGGCGTCGAAGGGGCCGGTACCG
GGAGCGGCGACGACCGGCCCGATGCCTGTTAAGGAGATGTACACGTGAAC
GAGGGGGTTCCTAAGGGGAGACGGCACTTCTAATTGCGAGTTCTGCAAGA
AGTCTAGCGGCGGGCTCATCGCCTGCTCTTTCGAAGGCTGCGGCATCCGC
TTCCACCCGCCGTGCGGCAAGGCCCACGGGTGCACCGCCGCCCGCGGCCC
GCACGTCCACCCCCGAGACTGGTCGGCCCGGTGCCCGAAGCACGCGCGAG
CCGCCGCGGCGGCGTCGAAGGGGCCGGTACCGGGAGCGGCGACGACCGGC
CCGATGCCTGTTAAGGAGATGTACACGTGA
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