mRNA_L-elsbetiae_contig1900.5594.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1900.5594.1 vs. uniprot
Match: A0A6H5K7Y3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y3_9PHAE) HSP 1 Score: 635 bits (1638), Expect = 7.100e-195 Identity = 568/1484 (38.27%), Postives = 706/1484 (47.57%), Query Frame = 2
Query: 29 LVEPSIEQLAPGVARLMGHVSTVVRETSAHAVHTLLAAAPGAMALCTRCTVANSEEENSCWVRGLLHLCLDGAVKVREPALVAAERAVSMCNLRSGNAEVAAWVLKELRDGTLKEALRRVIMGSAASQSPPAPAVPAE-AEPVAEGSNERSSSPSXXXXPADSEPRYAKPRLVKQAIRAWAVYLSLADLDSLL-LKPEKGRKGLWDEGTALWSWLSSRGGDHRDGVRTQALESWAMFTKSMVAQFSLNPAKTQASKVAHIFLAGLAKRIPKEKVADVRGSAMSAIASVTASFPSPLLRHLWESRSIKQRQAQGLGDVLQAVAKGDKSVDARYYCARILANLLPCFPLGSAEPHPSLREARIDLTKTMPHVLITLESLMLGEGEESAAPDPEGAASTIDDMARPLL-----SSGGQSGGSSAAAQLEILPMDGLIASAWCGLAFWAMERAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPTA---GSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAAEEVGLAAPTPDASAEKLTRWKASLLGALIRGLSRRLALSKVSTAPGTEAGDSGAKGNLGTAEQALPEQAWLDARVDVSSLY-----SGGSSTCPECALAGCVIRDAILREWGKTKDGDGEKKGGTAAGGKRDGEKREANPPSPRFPLWLVLLEGALRGRCG--------------------------------------SNKHGGGDRRCH-SAALLPRVFLAEALTLSPRDWSGPFLVSLYKGVFGRTPGVLPTMRRQQEQCSALTVLGHAWRAEASRVLSGWKSRRLPCPNPSASGDRTTDVGLDGSVQNA---GLLHSG------------SAAGAPVPQ------------EPSSDQLRQDTGSTLLLLVRTXXXXXXXXXXXXXETACNRPSRGVETRAAALGGDACAPGGRATAHDGERGGAREGEGVAENQASNRNLEKGRGRGWSQDDGRLAAAKAALGAESAGLWSEVFEARRNSHTSTAGFTRLVKHLAEACGSCALSAE-APKEAAVGPGASGGDTE-NLTGAWGLGFSQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAR-----------------------NTLAPPPPLFSLPVLLAAALALLRAAPKETKARVRGQAWKAGLATLAWALTSTPSXXXXXXXXXXXXXXXRLAPASSSATTAAEEGATA-ADICRCFGAVRSTLAAAAAGTAADSSGV----NWSSGTT-FPLDQASLAPVSLLLADAVSRSYAVSAAPAASAAQV-ASPEKMVGAIISTPCAAADAHVASASVAAIPSVRREVRSLVLCVLSAVGSFRPEVLEMSPGLLSALSPLLEAVMDLPASSSDGSGLQSSLLGTWNDTFGSLNLKPPSAAPAGAGDRRIAWQKAFRPSLLRGLSKLSRRKEVKLPSGITLPALD 4141
LV PS+ QLAP VAR M STV R+ SA A+H+LL + PGAMA C EEE+S WVR LL LC D AVKVR AL AAERAVS+ LR GNA +AAWV++ LRDG L + + RV+ A+SQS A A A+P+ S SSSP+ + PR A P+ VK AIR WAV+LSLAD SLL + G+K L D GT L++WL + D RD V+ QA+ESW MF SM+AQ + +A KVAH+FL L++ + KEK VR AMS++ V ASFPS L+ LW + ++++GLG+VL+ VA G AR++ AR+LA LLPCF L AEPHP LR+A ++L + +P +L LE+LM E +P PE AAS +D A S G + A +LE+LP GLIA+AWCGLAFWAME+AA A GSG RG A ++PT D +L RWK +LL ALIRGLSRRL + D+ A+ A LP +AWLDA VD SS++ +G C EC AG VIR +I R+W K++ PLWLVLL G LRGRCG GGG+ C S LP+ FLA AL+LSP W L SL G R Q+E+ AL V G WRAEA+R L+ W +R LP S G G DG VQ G + G SAAG V + +PS + LR DT +TL + N S+ E + A G AC RA G G EG +A++ NL G GWS+ R A ++ GAE+A LW +FEARRNS GF++LVK L++ CG+CA A P G GG + GAWGL FSQT XXXXXXXXX + LAPP P +LPVL AAALALL AAP E A+ RG+AWKAG ATLAW LT+ + XXX +S++ A EEGAT A++C+C AV S L AA + SSGT FPLD SLAPV LLA AV SY+ + A PE G+++ +++ A VAA P+VR E+R LV C LSA + SPGLL+ALSPLLEAV+D+P+SS D LQSSLL WN TFG LNLK P A AW+ AF P+LLR LS LSRR EV++P GITLP LD
Sbjct: 67 LVAPSVAQLAPAVARTMRMESTVARQQSAMAIHSLLGSVPGAMARCDPGRADRPEEEDSFWVRCLLRLCFDDAVKVRADALKAAERAVSLGGLR-GNAGIAAWVVEALRDGRLSQGMNRVLFYDASSQSQAATTAAAGGADPLPHASG--SSSPAAASD--KTNPRQATPQRVKHAIRVWAVHLSLADPASLLRARDTAGKKRLLDVGTGLFTWLCGKSADGRDDVKVQAVESWEMFAVSMMAQIG----RDEAKKVAHMFLRALSRWVLKEKGV-VREVAMSSLMRVVASFPSISLKPLWTTTWKGDKKSKGLGEVLRDVAGGSSGEIARHHSARVLAALLPCFCLRPAEPHPLLRDAGLNLDEELPLLLSMLETLM----EAFPSPIPEDAASAVDAAAPXXXPXSXSSRGAEEENCCADVRLEVLPTTGLIANAWCGLAFWAMEQAAAAGLDVEGTGKGKSGAADAGEFASDNQDGSGKGHGNTAAAASDCRKEGSGPSSSSAAPPQENEASETSQPLQVLLEWLLGVRARPSTGTSAKVTTVTEKAVPGGSTAEG-RGKAAANSASSPTTD----RLARWKEALLAALIRGLSRRLDVQ-----------DNEAEAGADDANAKLPGRAWLDAPVDSSSVFDGRLCAGDCPACAECLPAGGVIRQSISRKWLKSET-----------------------------PLWLVLLTGVLRGRCGLEYRCLDGGXXXXXXXXSRVVREACHKGNPRHESGSATDGTRGGGESACQFSPVFLPQSFLAGALSLSPGGWPAQLLASLLTGARSAKG------RTQEEEDLALVVAGRVWRAEAARNLAEW-NRCLPLSTDSYVG--AAGAGFDGGVQGVTPGGDRYKGGPVAPHARTVGTSAAGVDVQKXXXXXXXXXXXXQPSKN-LRTDTANTLRFSLHAACSLFSHPPEG------NTRSQSKEPKGAT--GQACDLESRAA---GSTGVQNEGAAIADHDG---NLRGGASGGWSEGGKRSVAVESFFGAEAARLWLGLFEARRNSPAQPKGFSKLVKALSKDCGNCAFVASWGPLGGGKGGAGEGGSSAVPPPGAWGLDFSQTQPPXXXXXXXXXPRTGQRESGDFASSMQGDKTAGAAAMRYDKRSNTDHPEGKKQNGGGDALAPPXPFVALPVLAAAALALLTAAPAEADAKARGRAWKAGSATLAWTLTAAAAAPGTTAWPPPASXXXXQW-SSAAGLAAGEEGATVPAEVCQCLCAVHSCLKVAAXXXXXXXXXXXLNRSSSSGTAGFPLDGDSLAPVCRLLAVAVRTSYSTAXXXXXXXXXXDAGPESSSGSLVRASFSSSTASGTEVVVAADPAVRLEIRGLVACALSA-----SRKVAASPGLLTALSPLLEAVLDVPSSSCDADSLQSSLLDVWNATFGKLNLKQPPAP---------AWKAAFSPALLRRLSDLSRRAEVEMPPGITLPVLD 1452
BLAST of mRNA_L-elsbetiae_contig1900.5594.1 vs. uniprot
Match: D8LJ95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ95_ECTSI) HSP 1 Score: 565 bits (1455), Expect = 1.090e-168 Identity = 568/1421 (39.97%), Postives = 684/1421 (48.14%), Query Frame = 2
Query: 866 MSAIASVTASFPSPLLRHLWESRSIKQRQAQGLGDVLQAVAKGDKSVDARYYCARILANLLPCFPLGSAEPHPSLREARIDLTKTMPHVLITLESLMLGEGEESAAPDPEGAASTIDDMA------RPLLSSGGQSGGSSAAAQLEILPMDGLIASAWCGLAFWAMERAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPTAGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGA--AEEVGLAAPTPDAS--AEKLTRWKASLLGALIRGLSRRLALSKVSTAPGTEAGDSGAKGNLGTAEQALPEQAWLDARVDVSSLYSGGSST-----CPECALAGCVIRDAILREWGKTKDGDGEKKGGTAAGGKRDGEKREANPPSPRFPLWLVLLEGALRGRCG--------------------------------------SNKHGGGDRRCH-SAALLPRVFLAEALTLSPRDWSGPFLVSLYKGVFGRTPGVLPTMRRQQEQCSALTVLGHAWRAEASRVLSGWKSRRLPCPNPSASGDRTTDVGLDGSVQNA-------------------GLLHSGSAAGAPVPQEPSSDQLRQDTGSTLLLLVRTXXXXXXXXXXXXXETACNRPSRGVETRAAALGGDACAPGGRATAHDGERGGAREGEGVAENQASNRNLEKGRGRGWSQDDGRLAAAKAALGAESAGLWSEVFEARRNSHTSTAGFTRLVKHLAEACGSCALSAEAPKEAAVGPGASGGDTENLT----------GAWGLGFSQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAR---------------------NTLAPPPPLFSLPVLLAAALALLRAAPKETKARVRGQAWKAGLATLAWALTSTPSXXXXXXXXXXXXXXXRLAPASS-----SATTAAEEGATA-ADICRCFGAVRSTLAAAAAGTAADSSGV----NWSSGTT-FPLDQASLAPVSLLLADAVSRSYAVSAAPAASAAQVASPEKMVGAIISTPCAAADAHVASASVAAIPSVRREVRSLVLCVLSAVGSFRPEVLEMSPGLLSALSPLLEAVMDLPASSSDGSGLQSSLLGTWNDTFGSLNLKPPSAAPAGAGDRRIAWQKAFRPSLLRGLSKLSRRKEVKLPSGITLPALDGSGGTAXXXXXXXXXXXXXVAEPLGRQGRRLSDGGADGQKGPALGSGDAGEGKTSA------QLTAVGDLRGAAAGMG--RGRAPPGFAGGGGVAGVLSGEGARRSFLRTAASRRGLSPP-SRALGTPKKRPASPAGTGSGGSAEKFVRVVGSGRGSASK--TPIRRAAVTTHTSLDASQATSPWEEGGSQLPDTDPDSVPDVGLEEGLAVPPP 4750
MS++ V ASFPS L+ LW + ++++GLG+VL+ VA G A ++ ARILA LLPCF L AEPHP LR+A ++L + +P +L LE+LM E +P PE AAS +D A A +LE+LP GLIA+AWCGLAFWAME+AA A X XXXXXXXXXXXXXXXXXXX TA + G AE G AA P +S ++L RWK +LL ALIRGLSRRL + T G + D+ AK LPE+AWLDA VD SS++ G S C EC AG VIR +I R+W K++ PLWLVLL G LRGRCG GGG C S L + FL AL+LSP W L SL GV R Q+E+ AL V G WRAEA+R L+ W +R LP S G G DG Q G+ SG+ Q S+ LR T +TL L+ N S+ E+ AA G AC PG R G + ARE GVAE+ NL RGWSQ R AA ++ GAE+A LW +FEARRNS GF++LVK LA+ CG+CA V G GG WGL FSQT XXXX A +TLAPPPP +LPVL AAALALL AAP E A+ +G+AWKAG ATLAW LT+ XXXXXXXXXXXXXXX + A EEGAT A++C+C GAVRS L A A AADS+G + SSGT FPLD+ SLAPV LLA AV SYA A A+AA A PE G++I +++ A V VAA P+VR E+R LV C LSA + SPGLL+ALSPLLEAV+D+ +SS D LQSSLL WN TFG +NLK P A AW+ AF PSLLR LS LS+R EV++P GITLP LD G +G LS+G G +G + ++ G + A + AVGDLR AAAG G RGRA G A GGVAG L +G RRSF++ A+ R SP S + TPKKR SP GG + KF+RVVG+GRGS TP RRAAVTTHTSLD SQ+ +PWE+G SQLPDT+PDS PD+ LEE L PPP
Sbjct: 1 MSSLMRVVASFPSTSLKPLWTTTWKGDKKSKGLGEVLRDVAGGSSGEIAWHHSARILAALLPCFCLPPAEPHPLLRDAGLNLGEELPLLLSILETLM----EAFPSPIPEDAASAVDAAAPXXXXXXXXXXXXXXXXXCCADVRLEVLPTSGLIANAWCGLAFWAMEQAAAAGLDVQGTGKGXSGPXXXXXXXXXXXXXXXXXXXN------TAAAARDCRKEGSGPSSSSAAPPKENEASEAGRPLQVLLEWLLGVRARPSTGTGAKVTTVTEKAVPGGSTAEGRGKAAANPASSPTTDRLARWKVALLAALIRGLSRRLDVQNAETEAGAD--DADAK---------LPERAWLDAPVDSSSVFDGWSCAGDCPACAECLPAGGVIRQSISRKWLKSET-----------------------------PLWLVLLTGVLRGRCGLEYRCLDGSGGGGSGGESRVVREACHKGNPRHEPGVATDGTRGGGGSACQFSPVFLSQSFLGGALSLSPGGWPAQLLASLLTGVRSAKG------RTQEEEDLALVVAGRVWRAEAARNLAEW-NRCLPLSTDSYVG--AAGAGFDGGAQGVTLGGDRYRGGPVAPHARTVGISVSGADVQQKQQQRQPSENLRTATANTLRFLLHAACSLFSRPPER------NTRSQSKESEGAA--GQACDPGNRTVVSTGVQNEAREAVGVAEHDG---NLRGEDSRGWSQGGKRSAAVESVFGAETARLWLGLFEARRNSPAQPKGFSKLVKALAKDCGNCAF--------VVSGGPLGGXXXXXXXXXXXXXXXXAVWGLDFSQTQPPSQXXXXQPRTGQREPGDFASSTQGDKTAGAAATRYDKCSNTDHPEGKKQNGGGDTLAPPPPFVALPVLAAAALALLTAAPAEADAKAKGRAWKAGSATLAWTLTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGVAAGEEGATIPAEVCQCLGAVRSCLTVAVA-AAADSAGGGPNRSSSSGTAGFPLDRDSLAPVCRLLAVAVRTSYAT--AGGAAAAADAGPEPSPGSLIQAAPSSSTA-VGIEVVAADPAVRPEIRGLVACALSA-----SRKVAASPGLLTALSPLLEAVLDVSSSSCDADSLQSSLLDVWNATFGKINLKQPPAP---------AWKAAFSPSLLRRLSDLSQRAEVEMPRGITLPVLD------------TVAAPPTATTAQGLRGSGLSEGNK-GAEGGGIAVEESARGGSEARDYSQPESAAVGDLRAAAAGGGGARGRASSGCAWNGGVAGALPAKGGRRSFMKQAS--RSPSPSQSHPVATPKKRSPSPTSPDGGGFSGKFIRVVGNGRGSGGNRGTPKRRAAVTTHTSLDGSQSIAPWEDG-SQLPDTNPDSGPDLPLEEVLPPPPP 1309
BLAST of mRNA_L-elsbetiae_contig1900.5594.1 vs. uniprot
Match: D8LJ94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ94_ECTSI) HSP 1 Score: 221 bits (564), Expect = 1.080e-59 Identity = 142/284 (50.00%), Postives = 180/284 (63.38%), Query Frame = 2
Query: 2 VSKQTMEPRLVEPSIEQLAPGVARLMGHVSTVVRETSAHAVHTLLAAAPGAMALCTRCTVANSEEENSCWVRGLLHLCLDGAVKVREPALVAAERAVSMCNLRSGNAEVAAWVLKELRDGTLKEALRRVIMGSAASQSPPA-PAVPAEAEPV--AEGSNERSSSPSXXXXPADSEPRYAKPRLVKQAIRAWAVYLSLADLDSLL-LKPEKGRKGLWDEGTALWSWLSSRGGDHRDGVRTQALESWAMFTKSMVAQFSLNPAKTQASKVAHIFLAGLAKRIPKEK 841
++K TM P LV PS+ QLAP VA+ M STV R+ SA A+H+LL + PGAMA C EEE+S WVR LL LC D AVKVR AL AAERAVS+ LR GNA +AAWVL+ LRDG L + + RV+ A+SQS P EA+P+ A GS+ +++P + PR A P+ VK AIR WAV+LSLAD LL K G+K L D GT L++WLS + D RD V+ QA+ESW MF SM+AQ + +A KVAH+FL L++ + KEK
Sbjct: 126 IAKNTMAPDLVAPSVAQLAPAVAQTMRMESTVARQQSAMAIHSLLGSVPGAMARCDPGRADRPEEEDSFWVRCLLRLCFDDAVKVRADALKAAERAVSLGGLR-GNAGIAAWVLEALRDGRLSQGMSRVLFYDASSQSQATVPGAAGEADPLPHALGSSSTAAAPDR------TNPRQATPQRVKHAIRVWAVHLSLADPTRLLRAKDSAGKKRLLDVGTGLFTWLSGKSADGRDDVKVQAVESWEMFAVSMMAQIG----REEAKKVAHMFLRALSRWVLKEK 398
BLAST of mRNA_L-elsbetiae_contig1900.5594.1 vs. uniprot
Match: A0A6H5L7N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7N1_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 2.060e-7 Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 2
Query: 5285 APSSFRAPSTGQDAGVDALMQDVRSLAYRVDAVRSALSPEQLQEVGSLLQKMVQ 5446
AP S + G VDAL+QDVRSLA R++A RSA+SPEQL+EVG+LLQK V+
Sbjct: 91 APPSVQQRGRGGGVAVDALLQDVRSLARRLEAARSAMSPEQLEEVGALLQKAVE 144 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1900.5594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1900.5594.1 >prot_L-elsbetiae_contig1900.5594.1 ID=prot_L-elsbetiae_contig1900.5594.1|Name=mRNA_L-elsbetiae_contig1900.5594.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1812bp MEPRLVEPSIEQLAPGVARLMGHVSTVVRETSAHAVHTLLAAAPGAMALCback to top mRNA from alignment at L-elsbetiae_contig1900:4729..17830+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1900.5594.1 ID=mRNA_L-elsbetiae_contig1900.5594.1|Name=mRNA_L-elsbetiae_contig1900.5594.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=13102bp|location=Sequence derived from alignment at L-elsbetiae_contig1900:4729..17830+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1900:4729..17830+ >mRNA_L-elsbetiae_contig1900.5594.1 ID=mRNA_L-elsbetiae_contig1900.5594.1|Name=mRNA_L-elsbetiae_contig1900.5594.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=10872bp|location=Sequence derived from alignment at L-elsbetiae_contig1900:4729..17830+ (Laminarionema elsbetiae ELsaHSoW15)back to top |