Homology
BLAST of mRNA_L-elsbetiae_contig190.5589.1 vs. uniprot
Match:
A0A6H5KLB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLB3_9PHAE)
HSP 1 Score: 177 bits (450), Expect = 2.980e-48
Identity = 108/188 (57.45%), Postives = 119/188 (63.30%), Query Frame = 2
Query: 23 FMAWSSVHGGRLMLVKDLVYACLAEFGMRPAKATQEREVIQEIFRRHEASLKDSDG--FPFGPEGTAWAVVNARWWAQWKDYSRIGSEVTVPRGSLSRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------PXXXXXXXXXXXSSMGPTMAARSRASSRVFGSTPVLGGRGN 547
FMAWSSVHGGRLMLVKDLVYACLAEFGM+PAKA QEREVI EIFRRH+ +L D +G P+GP GT WAV+NARW A W+DY RIG + T+PRGSLSR S XXXXXXXXX SS+GPTM RSRASSRVFGS PVLGGRG+
Sbjct: 565 FMAWSSVHGGRLMLVKDLVYACLAEFGMQPAKAVQEREVIHEIFRRHDVALDDGEGEGLPYGPVGTTWAVINARWLAGWRDYVRIGFDATMPRGSLSRVSSNSSIASXXXXXXXXXRQGPPATVAGAGVRSGTVANGRASGGGVGGDSSGLNRPSPPPPSSIGPTMTPRSRASSRVFGSAPVLGGRGH 752
BLAST of mRNA_L-elsbetiae_contig190.5589.1 vs. uniprot
Match:
D8LR49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR49_ECTSI)
HSP 1 Score: 160 bits (406), Expect = 2.440e-42
Identity = 131/177 (74.01%), Postives = 142/177 (80.23%), Query Frame = 2
Query: 56 LMLVKDLVYACLAEFGMRPAKATQEREVIQEIFRRHEASLKDSDG--FPFGPEGTAWAVVNARWWAQWKDYSRIGSEVTVPRGSLSRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXX-----------SSMGPTMAARSRASSRVFGSTPVLGGRGN 547
LMLVKDLVYACLAEFGMRPAKA QEREVI EIFRRH+ +L D +G P+GP GT WAV+NA+WWAQW+DY RIG + T+PRGSLSR S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXX SS+GPTM RSRASSRVFGS PVLGGRG+
Sbjct: 514 LMLVKDLVYACLAEFGMRPAKAVQEREVIHEIFRRHDVALDDGEGEGLPYGPVGTTWAVINAQWWAQWRDYVRIGFDATMPRGSLSRVSSNSSIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSIGPTMTPRSRASSRVFGSAPVLGGRGH 690
BLAST of mRNA_L-elsbetiae_contig190.5589.1 vs. uniprot
Match:
A0A835YVN1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN1_9STRA)
HSP 1 Score: 90.5 bits (223), Expect = 8.790e-18
Identity = 41/90 (45.56%), Postives = 60/90 (66.67%), Query Frame = 2
Query: 5 GLTFAGFMAWSSVHGGRLMLVKDLVYACLAEFGMRPAKATQEREVIQEIFRRHEASL-KDSDGFPFGPEGTAWAVVNARWWAQWKDYSRI 271
GLTFAG+MAWS+ H GR+ L+ DL + +AE GMRPA A QER+V+ E R+++A ++ F +G GT W +++ WW +W Y+R
Sbjct: 524 GLTFAGYMAWSAAHPGRMQLLHDLAFIAIAECGMRPATAAQERDVVSEHMRQYDALHGREVPLFRYGAVGTPWNLIDQVWWNRWCAYARF 613
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig190.5589.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 2.98e-48 / Id = 57.45 Expect = 2.44e-42 / Id = 74.01 Expect = 8.79e-18 / Id = 45.56 Sequence A0A6H5KLB3_9PHAE D8LR49_ECTSI A0A835YVN1_9STRA
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota
Seed ortholog score 161.4
Seed ortholog evalue 3.8e-37
Seed eggNOG ortholog 2880.D8LR49
KEGG ko ko:K11837
Hectar predicted targeting category other localisation
EggNOG free text desc. ubiquitinyl hydrolase activity
EggNOG OGs COG5560@1,KOG1870@2759
EC 3.4.19.12
COG Functional cat. O
Best tax level Eukaryota
Best eggNOG OG NA|NA|NA
BRITE ko00000,ko01000,ko01002,ko04121
Exons 3
Model size 548
Cds size 522
Stop 0
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815790.0648823-CDS-L-elsbetiae_contig190:7780..8038 1622815790.0648823-CDS-L-elsbetiae_contig190:7780..8038 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig190 7781..8038 -
1691683104.3457627-CDS-L-elsbetiae_contig190:7780..8038 1691683104.3457627-CDS-L-elsbetiae_contig190:7780..8038 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig190 7781..8038 -
1622815790.0789492-CDS-L-elsbetiae_contig190:8720..8850 1622815790.0789492-CDS-L-elsbetiae_contig190:8720..8850 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig190 8721..8850 -
1691683104.3594465-CDS-L-elsbetiae_contig190:8720..8850 1691683104.3594465-CDS-L-elsbetiae_contig190:8720..8850 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig190 8721..8850 -
1622815790.0898523-CDS-L-elsbetiae_contig190:9839..9973 1622815790.0898523-CDS-L-elsbetiae_contig190:9839..9973 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig190 9840..9973 -
1691683104.3679385-CDS-L-elsbetiae_contig190:9839..9973 1691683104.3679385-CDS-L-elsbetiae_contig190:9839..9973 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig190 9840..9973 -
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815790.0995986-UTR-L-elsbetiae_contig190:9973..9998 1622815790.0995986-UTR-L-elsbetiae_contig190:9973..9998 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig190 9974..9998 -
1691683104.378-UTR-L-elsbetiae_contig190:9973..9998 1691683104.378-UTR-L-elsbetiae_contig190:9973..9998 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig190 9974..9998 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig190.5589.1
>prot_L-elsbetiae_contig190.5589.1 ID=prot_L-elsbetiae_contig190.5589.1|Name=mRNA_L-elsbetiae_contig190.5589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=174bp
MAWSSVHGGRLMLVKDLVYACLAEFGMRPAKATQEREVIQEIFRRHEASL KDSDGFPFGPEGTAWAVVNARWWAQWKDYSRIGSEVTVPRGSLSRASSSS SITSNGGGGSGSSHQQPASALTGATAAAAAAGTPAITPPSPTPPPSSMGP TMAARSRASSRVFGSTPVLGGRGN back to top mRNA from alignment at L-elsbetiae_contig190:7781..9998-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig190.5589.1 ID=mRNA_L-elsbetiae_contig190.5589.1|Name=mRNA_L-elsbetiae_contig190.5589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2218bp|location=Sequence derived from alignment at L-elsbetiae_contig190:7781..9998- (Laminarionema elsbetiae ELsaHSoW15)CGGCGGGCTGACGTTTGCCGGGTTC ATGGCGTGGTCGAGCGTGCACGGGG
GCAGGCTCATGCTGGTGAAGGACCTCGTGTACGCGTGCCTTGCCGAGTTC
GGCATGCGGCCCGCCAAGGCGACGCAGGAGAGAGAGGTCATCCAGGAGAT
ATTCAGAAG GTGTGCGCGCGCGCTTGGGGGGGCAGCGGGCAGGCGGCGGC
GGTGGCGGCGGGGGTGGCTATTTTTATCCGCCACAAATCTGTGGTTTTGT
GTTGTTGTGCTTGGTGTGAGTTGGTGCGTTTTTTCTCCCGTACCGGGATA
CAGCAGTGTGGTGGTGCGTTTGGTGTGGTGGTTCTGGCCAATATTTTCGC
AGACACTCACCTGCCCTGACTTCCGCAGGTGAAGGCTTTTCACGTAAGGT
CTTGCACAGTGAGAGGGGAGGAAGGTGGTGCCCCCTAAAGTGGTGTGGGG
GAGGAAGGGAGGGGAGGGGTTGGTGTGGTTGTGGTGAATGCTGGGTGGCG
TTGTCGGGCGTGGCGCCGGGGCCCTTACCAGGGTTTTGGGTGTTATTTAC
GTAGCCGTCTTGTTATTCTGTTGTGTTTTTGCTGCTGCTCGACGACGGCC
AACCCAACGCGCGATAGAGCTTCCCGCCTCTCGGCCCTTCTTCCATACAA
CCCGGTTCGGTTTGACCAACGCGTAGTACCACAGCGAAGTACATCTACGA
AGACGAAACCCCTACGAAGTTCTTCGCGCTGCCCGCTTGTGGCATGGCTT
GGGGAGGGAACAACACGCACAATTTGCCCGGGCAGCCATTAGATTCTCGC
GCTTTTTTCCGCCTTATACCTTGCGTAGGTACGATACGACGCTTCCTACG
TCTCTTTCGTCCTCTTCTCTCTTCTTGGTCCGGAAACCCATCCTCCCCCC
CTGCCAGCACGTGTCTTTTTCTTGCTCTCTGTGTGCCCCCCCGCCACCCC
CCCCCCCCCCCCCCCCCCCCCCCCCTTTTTTTCCCCTCCTGGTCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCGCGAACGCGGTTCGCTTGCCCCA
CGATTTTATCCTCACTGCTGTTTTGTGATTTGCGGCTTGCGCGCTTGTGT
GTTTCAACGCCCACACCTACGTGTGTATGGATGGCTGCCGTTCTGAAGGC
ACGAGGCCTCTCTGAAGGACTCGGACGGCTTTCCGTTCGGGCCCGAGGGT
ACCGCCTGGGCGGTGGTCAACGCGCGCTGGTGGGCGCAGTGGAAGGACTA
CTCCCGCATCGGCTCCGAGGTTACCGTG GTGAGACGAGGGAAGGGGGGGG
AGGGGGGGGGGCCGCGAGGATTCCGACGGAGGAGAGCAGGTAGTGCACGA
CACTTGTGATGTTTTTCAGGATCTACTTTCATGTGCGTAGGTCGGCGTGT
TGTAGAGACTGTTTTGTTCCCCGAGAAATGTCATCGAGGGTTGTGGTGCG
CTCCTTCCTTCCTGGCTGTGTTTGCTCCACCGCTCTCTTTTGTGGGGTGC
TTGTGCATGTGTGGGTGTGGTGTGTGTGTGGGGGAGGGAGGTTACCAAGT
TGTGGTGTTGATCCGATCTTTCGACGAATGTCTACAAATATCAGCGGTCT
ACGGTCCAACTTGTATCTGTTTTTGGAGGCCGTTGGTCAAATAATCTGAA
GAGAGTTGTCGTGCGCATGCATGCAGGTGTGATGCAGGAAAACGATGTGC
GTGTTTATCTACGCCGATGGGGGCAAGGCTATCAAGCGCGACCACAGCTA
GTAGAGCGTGCTCCCCTGGCTGGCCTTAAGTCGCTGACGAGAGAGCGTCT
GGGCGCGCCGGGATTGTCTAGGAAAATGACGGGAAAACGGTGTTGCTAAA
AGACGACAGGACACCAGGAACAAAATCATAACGCCTCCCCCGTTTTCCTT
TCGGGCCCCTTCTTATCGTCGTATGTCTACCGTCAACGCTCATTTTATTG
GAACGCCTAGCCCCGAGGAAGCCTGAGCCGTGCCAGCAGCAGCAGCAGTA
TCACGTCCAACGGGGGCGGCGGCAGCGGTAGCAGCCACCAGCAGCCCGCC
TCCGCCCTCACCGGGGCTACCGCCGCCGCCGCCGCCGCCGGGACCCCCGC
TATCACCCCGCCCTCGCCCACTCCACCGCCTTCTTCGATGGGGCCGACGA
TGGCGGCAAGGTCGAGAGCGAGCTCGCGGGTCTTTGGATCCACCCCCGTG
CTAGGCGGCAGGGGCAAT back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig190:7781..9998-
>mRNA_L-elsbetiae_contig190.5589.1 ID=mRNA_L-elsbetiae_contig190.5589.1|Name=mRNA_L-elsbetiae_contig190.5589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1044bp|location=Sequence derived from alignment at L-elsbetiae_contig190:7781..9998- (Laminarionema elsbetiae ELsaHSoW15) ATGGCGTGGTCGAGCGTGCACGGGGGCAGGCTCATGCTGGTGAAGGACCT CGTGTACGCGTGCCTTGCCGAGTTCGGCATGCGGCCCGCCAAGGCGACGC AGGAGAGAGAGGTCATCCAGGAGATATTCAGAAGATGGCGTGGTCGAGCG TGCACGGGGGCAGGCTCATGCTGGTGAAGGACCTCGTGTACGCGTGCCTT GCCGAGTTCGGCATGCGGCCCGCCAAGGCGACGCAGGAGAGAGAGGTCAT CCAGGAGATATTCAGAAGGCACGAGGCCTCTCTGAAGGACTCGGACGGCT TTCCGTTCGGGCCCGAGGGTACCGCCTGGGCGGTGGTCAACGCGCGCTGG TGGGCGCAGTGGAAGGACTACTCCCGCATCGGCTCCGAGGTTACCGTGGC ACGAGGCCTCTCTGAAGGACTCGGACGGCTTTCCGTTCGGGCCCGAGGGT ACCGCCTGGGCGGTGGTCAACGCGCGCTGGTGGGCGCAGTGGAAGGACTA CTCCCGCATCGGCTCCGAGGTTACCGTGCCCCGAGGAAGCCTGAGCCGTG CCAGCAGCAGCAGCAGTATCACGTCCAACGGGGGCGGCGGCAGCGGTAGC AGCCACCAGCAGCCCGCCTCCGCCCTCACCGGGGCTACCGCCGCCGCCGC CGCCGCCGGGACCCCCGCTATCACCCCGCCCTCGCCCACTCCACCGCCTT CTTCGATGGGGCCGACGATGGCGGCAAGGTCGAGAGCGAGCTCGCGGGTC TTTGGATCCACCCCCGTGCTAGGCGGCAGGGGCAATCCCCGAGGAAGCCT GAGCCGTGCCAGCAGCAGCAGCAGTATCACGTCCAACGGGGGCGGCGGCA GCGGTAGCAGCCACCAGCAGCCCGCCTCCGCCCTCACCGGGGCTACCGCC GCCGCCGCCGCCGCCGGGACCCCCGCTATCACCCCGCCCTCGCCCACTCC ACCGCCTTCTTCGATGGGGCCGACGATGGCGGCAAGGTCGAGAGCGAGCT CGCGGGTCTTTGGATCCACCCCCGTGCTAGGCGGCAGGGGCAAT back to top