mRNA_L-elsbetiae_contig18996.5581.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18996.5581.1
Unique NamemRNA_L-elsbetiae_contig18996.5581.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18996.5581.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 1.810e-51
Identity = 79/102 (77.45%), Postives = 89/102 (87.25%), Query Frame = 2 
Query:    2 VCRV-------GKTEYPGESEGEVHCHGFVWSEDATDKYIHLLAQFVQHYDHKERRGYFGNLPNAPMCGCIEDMPEVSEADCTEYDDEPGREGKFSSCTDND 286
            VCRV         TEYPGESEGEVHCHGFVW EDATDKYIHLLAQFVQH+DH++RRGYFGN+  APMCGCIE+MP+VSEADCT YD+EPGREGKF++CT+ND
Sbjct:  359 VCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNND 460
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BLAST of mRNA_L-elsbetiae_contig18996.5581.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 1.170e-49
Identity = 79/102 (77.45%), Postives = 88/102 (86.27%), Query Frame = 2 
Query:    2 VCRV-------GKTEYPGESEGEVHCHGFVWSEDATDKYIHLLAQFVQHYDHKERRGYFGNLPNAPMCGCIEDMPEVSEADCTEYDDEPGREGKFSSCTDND 286
            VCRV         TEYPGESEGEVHCHGFVW EDATDKYIHLLAQFVQH+DH++RRGYFGN+  APMCGCIE+MP+VSEADCT YD+EPGREGKF++CT ND
Sbjct:  316 VCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTKND 417
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BLAST of mRNA_L-elsbetiae_contig18996.5581.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.070e-45
Identity = 73/102 (71.57%), Postives = 87/102 (85.29%), Query Frame = 2 
Query:    2 VCRV------GKT-EYPGESEGEVHCHGFVWSEDATDKYIHLLAQFVQHYDHKERRGYFGNLPNAPMCGCIEDMPEVSEADCTEYDDEPGREGKFSSCTDND 286
            VCRV      G+T E+PG+SEGEVHCHGFVW EDATDKYIHLL+QFVQ++DH++RRGY+GN+  APMCGCIE+MP VSEADCT YD +P REGKF++CT ND
Sbjct:  345 VCRVVDYPSMGETLEFPGDSEGEVHCHGFVWPEDATDKYIHLLSQFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCTTYDTDPEREGKFTACTKND 446
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BLAST of mRNA_L-elsbetiae_contig18996.5581.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.560e-35
Identity = 62/102 (60.78%), Postives = 73/102 (71.57%), Query Frame = 2 
Query:    2 VCRV------GKT-EYPGESEGEVHCHGFVWSEDATDKYIHLLAQFVQHYDHKERRGYFGNLPNAPMCGCIEDMPEVSEADCTEYDDEPGREGKFSSCTDND 286
            VCR+      G+T EYPG+SEG+VHCHG VW EDATDKYIHLLAQ+VQ +DH   +GY+GN+  APMCGC EDMPEVS+ADCT Y      E +   C  ND
Sbjct:  293 VCRIHDYPSAGETLEYPGDSEGDVHCHGIVWPEDATDKYIHLLAQYVQTFDHIGNKGYYGNIEGAPMCGCAEDMPEVSKADCTNYSPTEEDEDRIRGCDPND 394
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BLAST of mRNA_L-elsbetiae_contig18996.5581.1 vs. uniprot
Match: D8LHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS4_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.980e-29
Identity = 49/95 (51.58%), Postives = 65/95 (68.42%), Query Frame = 2 
Query:    2 VCRVGKTEYPGESEGEVHCHGFVWSEDATDKYIHLLAQFVQHYDHKERRGYFGNLPNAPMCGCIEDMPEVSEADCTEYDDEPGREGKFSSCTDND 286
            V R G TE+PGESEG+VHCHG VW E ++D+YI  LA  V +  H E +GYFG++P AP+C C+E MPEVS +DC++Y     +   F +C  ND
Sbjct:   19 VYRYGSTEFPGESEGDVHCHGLVWPEGSSDEYIIYLALDVAYNHHVEEKGYFGHIPGAPVCDCLERMPEVSRSDCSQYRPAHLKGSDFMACPKND 113
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BLAST of mRNA_L-elsbetiae_contig18996.5581.1 vs. uniprot
Match: A0A6H5L319_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.650e-29
Identity = 64/147 (43.54%), Postives = 79/147 (53.74%), Query Frame = 2 
Query:    2 VCRV-------GKTEYPGESEGEVHCHGFVWSEDATDKYIHLLAQFVQHYDHKERRGYFG---------------------------------------------NLPNAPMCGCIEDMPEVSEADCTEYDDEPGREGKFSSCTDND 286
            VCRV       G  E+ G+SE E H HGFVW+EDATDKYIHLL+QFVQ +DH++RRGY+G                                             ++  APM GC+E+MP VSEAD T YD +P REGKF++CT ND
Sbjct:  272 VCRVLDYPSVGGALEFAGDSEREAHRHGFVWTEDATDKYIHLLSQFVQKFDHRDRRGYYGKYITVGKAAHNVIMVNGRTTGPGEDNTNNPLSPPPNVSHVILVVTSIEGAPMYGCVEEMPVVSEADGTTYDTDPEREGKFTACTTND 418
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BLAST of mRNA_L-elsbetiae_contig18996.5581.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.450e-26
Identity = 47/95 (49.47%), Postives = 62/95 (65.26%), Query Frame = 2 
Query:    2 VCRVGKTEYPGESEGEVHCHGFVWSEDATDKYIHLLAQFVQHYDHKERRGYFGNLPNAPMCGCIEDMPEVSEADCTEYDDEPGREGKFSSCTDND 286
            VC     E+PG+SEG VHCHGFVW E+A+D +I  LA  V   +H + + Y GN+P AP+C C+E+MPEVS ADCT+Y         F +C+ ND
Sbjct:   82 VCSYRGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKND 176
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BLAST of mRNA_L-elsbetiae_contig18996.5581.1 vs. uniprot
Match: D7G8C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 6.060e-26
Identity = 47/95 (49.47%), Postives = 62/95 (65.26%), Query Frame = 2 
Query:    2 VCRVGKTEYPGESEGEVHCHGFVWSEDATDKYIHLLAQFVQHYDHKERRGYFGNLPNAPMCGCIEDMPEVSEADCTEYDDEPGREGKFSSCTDND 286
            VC     E+PG+SEG VHCHGFVW E+A+D +I  LA  V   +H + + Y GN+P AP+C C+E+MPEVS ADCT+Y         F +C+ ND
Sbjct:  146 VCSYRGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKND 240
[Close]
BLAST of mRNA_L-elsbetiae_contig18996.5581.1 vs. uniprot
Match: A0A7S3VDC8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VDC8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.480e-18
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 2 
Query:   26 YPGESEGEVHCHGFVWSEDATDKYIHLLAQ---FVQHYDHKERRGYFGNLPNAPMCGCIEDMPEVSEADCTEYD 238
            + GE E + HCHGF W+ED+TD           ++  YDH  +RGY  N+P APMCGC+E MP V+ ADCT+ D
Sbjct:  216 FEGEEEDDSHCHGFAWAEDSTDTSARFKGNNLFYISMYDHLTQRGYARNVPGAPMCGCVEKMPVVTRADCTQID 289
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BLAST of mRNA_L-elsbetiae_contig18996.5581.1 vs. uniprot
Match: A0A7S2P7R1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P7R1_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 6.000e-18
Identity = 38/77 (49.35%), Postives = 46/77 (59.74%), Query Frame = 2 
Query:   14 GKTEYPGESEGEVHCHGFVWSEDA--TDKYIHLLAQFVQHYDHKERRGYFGNLPNAPMCGCIEDMPEVSEADCTEYD 238
            G   +P ++EG++HCHG  W  D    D Y      +V  YDH  +RGY  N+P APMCGC E MP VS ADCTE D
Sbjct:   97 GYAIFPDDTEGDIHCHGLAWGNDVGLDDVYKGNNLFYVAMYDHLYQRGYVRNVPGAPMCGCAEQMPIVSRADCTEMD 173
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18996.5581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2N0_ECTSI1.810e-5177.45Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7G2N2_ECTSI1.170e-4977.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FT55_ECTSI1.070e-4571.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FT54_ECTSI1.560e-3560.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LHS4_ECTSI1.980e-2951.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L319_9PHAE2.650e-2943.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8D2_ECTSI1.450e-2649.47Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G8C5_ECTSI6.060e-2649.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3VDC8_9STRA4.480e-1848.65Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2P7R1_9STRA6.000e-1849.35Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18996contigL-elsbetiae_contig18996:2361..2901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue4.6e-08
Seed eggNOG ortholog2880.D7G2N2
Hectar predicted targeting categoryother localisation
EggNOG OGs2E0FN@1,2S7W7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size291
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815788.7933726-CDS-L-elsbetiae_contig18996:2361..24871622815788.7933726-CDS-L-elsbetiae_contig18996:2361..2487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18996 2362..2487 -
1691683103.4242003-CDS-L-elsbetiae_contig18996:2361..24871691683103.4242003-CDS-L-elsbetiae_contig18996:2361..2487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18996 2362..2487 -
1622815788.8088832-CDS-L-elsbetiae_contig18996:2739..29011622815788.8088832-CDS-L-elsbetiae_contig18996:2739..2901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18996 2740..2901 -
1691683103.4355948-CDS-L-elsbetiae_contig18996:2739..29011691683103.4355948-CDS-L-elsbetiae_contig18996:2739..2901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18996 2740..2901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18996.5581.1prot_L-elsbetiae_contig18996.5581.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18996 2362..2901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18996.5581.1

>prot_L-elsbetiae_contig18996.5581.1 ID=prot_L-elsbetiae_contig18996.5581.1|Name=mRNA_L-elsbetiae_contig18996.5581.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
CLPRRQDGVPRGERGRGALPRVRVVRGRHRQVHPPPRPVRAALRPQGEEG
LLRKPPQCSDVRLHRGHARGLGGRLHRVRRRARARGQVLLVHRQRP
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mRNA from alignment at L-elsbetiae_contig18996:2361..2901-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18996.5581.1 ID=mRNA_L-elsbetiae_contig18996.5581.1|Name=mRNA_L-elsbetiae_contig18996.5581.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=541bp|location=Sequence derived from alignment at L-elsbetiae_contig18996:2361..2901- (Laminarionema elsbetiae ELsaHSoW15)
TGTCTGCCGCGTAGGCAAGACGGAGTACCCCGGGGAGAGCGAGGGAGAGG
TGCACTGCCACGGGTTCGTGTGGTCCGAGGACGCCACCGACAAGTACATC
CACCTCCTCGCCCAGTTCGTGCAGCACTACGACCACAAGGAGAGGAGGGG
CTACTTCGGAAAGTGAGTCTTGGGTGCGGTTATACCTGTCGATGATGTCC
GACCCTATGTATGTCCATACTTGTGGGGTGTACAGGGCCACCTCTATCTG
CCACCGCCCCTTGCTGGCCTTGGAAATCGAATGCTACATACTGCAAATGT
TAATATTTCCCCTCCACTTGAACTCAAGGCATGTCGGTTCAACATCCTCA
ACTCGGCCATCCCCCCGCCTCCGCCCCCGCCCCCGCGCCGCTGCGTTTCG
CTTTGTTCGATCAGCCTCCCCAATGCTCCGATGTGCGGCTGCATCGAGGA
CATGCCCGAGGTCTCGGAGGCCGACTGCACCGAGTACGACGACGAGCCCG
GGCGCGAGGGCAAGTTCTCCTCGTGCACCGACAACGACCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18996:2361..2901-

>mRNA_L-elsbetiae_contig18996.5581.1 ID=mRNA_L-elsbetiae_contig18996.5581.1|Name=mRNA_L-elsbetiae_contig18996.5581.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig18996:2361..2901- (Laminarionema elsbetiae ELsaHSoW15)
TGTCTGCCGCGTAGGCAAGACGGAGTACCCCGGGGAGAGCGAGGGAGAGG
TGCACTGCCACGGGTTCGTGTGGTCCGAGGACGCCACCGACAAGTACATC
CACCTCCTCGCCCAGTTCGTGCAGCACTACGACCACAAGGAGAGGAGGGG
CTACTTCGGAAATGTCTGCCGCGTAGGCAAGACGGAGTACCCCGGGGAGA
GCGAGGGAGAGGTGCACTGCCACGGGTTCGTGTGGTCCGAGGACGCCACC
GACAAGTACATCCACCTCCTCGCCCAGTTCGTGCAGCACTACGACCACAA
GGAGAGGAGGGGCTACTTCGGAAACCTCCCCAATGCTCCGATGTGCGGCT
GCATCGAGGACATGCCCGAGGTCTCGGAGGCCGACTGCACCGAGTACGAC
GACGAGCCCGGGCGCGAGGGCAAGTTCTCCTCGTGCACCGACAACGACCT
CCTCCCCAATGCTCCGATGTGCGGCTGCATCGAGGACATGCCCGAGGTCT
CGGAGGCCGACTGCACCGAGTACGACGACGAGCCCGGGCGCGAGGGCAAG
TTCTCCTCGTGCACCGACAACGACCT
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