mRNA_L-elsbetiae_contig18991.5580.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18991.5580.1
Unique NamemRNA_L-elsbetiae_contig18991.5580.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18991.5580.1 vs. uniprot
Match: D8LEF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF4_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 6.210e-5
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    1 ELTSARDGGSGGLSGGDTTPAESSVLDRTGNSNGRLSLRELRSADEARRFYADERSRARADTA 189
            EL  AR G SG  + GDT     SVL+RT  S+GRLSLRELRSAD++R  Y+DER+R R D A
Sbjct:  107 ELLPARAGVSGIFAEGDT-----SVLERTRYSDGRLSLRELRSADKSRTHYSDERARPRPDDA 164
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18991.5580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEF4_ECTSI6.210e-558.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18991contigL-elsbetiae_contig18991:1143..2137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size498
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815788.712311-CDS-L-elsbetiae_contig18991:1143..15541622815788.712311-CDS-L-elsbetiae_contig18991:1143..1554Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18991 1144..1554 -
1691683103.3934171-CDS-L-elsbetiae_contig18991:1143..15541691683103.3934171-CDS-L-elsbetiae_contig18991:1143..1554Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18991 1144..1554 -
1622815788.7227015-CDS-L-elsbetiae_contig18991:2053..21371622815788.7227015-CDS-L-elsbetiae_contig18991:2053..2137Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18991 2054..2137 -
1691683103.4056726-CDS-L-elsbetiae_contig18991:2053..21371691683103.4056726-CDS-L-elsbetiae_contig18991:2053..2137Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18991 2054..2137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18991.5580.1prot_L-elsbetiae_contig18991.5580.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18991 1144..2137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18991.5580.1

>prot_L-elsbetiae_contig18991.5580.1 ID=prot_L-elsbetiae_contig18991.5580.1|Name=mRNA_L-elsbetiae_contig18991.5580.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
ELTSARDGGSGGLSGGDTTPAESSVLDRTGNSNGRLSLRELRSADEARRF
YADERSRARADTAVAPSDHHDAASAAAAAAAGGTRASNERAPASTRSSKS
RSGGNSSSSSSSSKSRSGSGNRRGHRRARNGGRAASSDERWVARVAAAGG
GASAGRRGGDAPRGA
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mRNA from alignment at L-elsbetiae_contig18991:1143..2137-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18991.5580.1 ID=mRNA_L-elsbetiae_contig18991.5580.1|Name=mRNA_L-elsbetiae_contig18991.5580.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=995bp|location=Sequence derived from alignment at L-elsbetiae_contig18991:1143..2137- (Laminarionema elsbetiae ELsaHSoW15)
GAGCTAACATCGGCGAGAGATGGCGGGAGTGGAGGCCTCTCCGGGGGAGA
CACAACGCCGGCGGAATCTTCTGTATTGGACCGGGTGCGCGCCGTGATGG
GGCTTTACTTTAGTGCGTTGGCTGCTTGGGTTGCTGGCTCACTCTCCTGG
TTGATTTTTTGTGGGTCACCTGCAGCATATGTAGCGGCATATTTGTTTTG
TGTTGTTTTGAGTCGAGCAAGTAGTCCCTTGATCATCCAATCAAGTGATC
AAACAGCGATCGGAGCAAGCGACAGACCGCCTTCGCATCCGAAGGCGCGA
TTCGCGAGCGGTTTACGGGTGTGCATCGACGCGTATGTTCGACTTGCGCG
ACATGTCTTGGGCTGTATAATGCGCCACGATATGATACACTCGTCTTGGC
GAACGAACAGCAGTATTAACATAGTACAGAGTTTTTTTTTTCCTGACCGC
CCCCCTGTTTCGTGATTTGCATTTCATCAAATTATCGGGACACAAATAAC
GCATTTGCTGAACCCCGCCTCCGCCGGCCGCACCGCTGAAACGTTACCCC
GTCTCTCCTTTCCTCTCCGACCGCGAGCAACAGACGGGAAACTCGAACGG
GCGCTTGTCCCTGCGCGAGCTCCGGTCGGCGGACGAGGCTCGCAGGTTCT
ACGCTGACGAGCGCTCGAGGGCGCGAGCAGACACCGCGGTGGCCCCGTCC
GATCACCACGACGCCGCTTCGGCGGCGGCAGCAGCAGCAGCGGGGGGGAC
GCGTGCCTCCAACGAGAGAGCACCGGCCAGCACCAGAAGCAGCAAGAGCA
GGAGCGGCGGGAACAGCAGCAGCAGCAGTAGCAGCAGCAAAAGCAGGAGC
GGCAGCGGCAACCGCAGAGGCCACCGCCGAGCGAGAAACGGCGGGCGAGC
GGCGAGCTCAGACGAGCGGTGGGTAGCACGCGTGGCTGCGGCCGGGGGAG
GGGCGTCGGCGGGAAGGCGTGGCGGCGACGCACCGCGCGGGGCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18991:1143..2137-

>mRNA_L-elsbetiae_contig18991.5580.1 ID=mRNA_L-elsbetiae_contig18991.5580.1|Name=mRNA_L-elsbetiae_contig18991.5580.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig18991:1143..2137- (Laminarionema elsbetiae ELsaHSoW15)
GAGCTAACATCGGCGAGAGATGGCGGGAGTGGAGGCCTCTCCGGGGGAGA
CACAACGCCGGCGGAATCTTCTGTATTGGACCGGGAGCTAACATCGGCGA
GAGATGGCGGGAGTGGAGGCCTCTCCGGGGGAGACACAACGCCGGCGGAA
TCTTCTGTATTGGACCGGACGGGAAACTCGAACGGGCGCTTGTCCCTGCG
CGAGCTCCGGTCGGCGGACGAGGCTCGCAGGTTCTACGCTGACGAGCGCT
CGAGGGCGCGAGCAGACACCGCGGTGGCCCCGTCCGATCACCACGACGCC
GCTTCGGCGGCGGCAGCAGCAGCAGCGGGGGGGACGCGTGCCTCCAACGA
GAGAGCACCGGCCAGCACCAGAAGCAGCAAGAGCAGGAGCGGCGGGAACA
GCAGCAGCAGCAGTAGCAGCAGCAAAAGCAGGAGCGGCAGCGGCAACCGC
AGAGGCCACCGCCGAGCGAGAAACGGCGGGCGAGCGGCGAGCTCAGACGA
GCGGTGGGTAGCACGCGTGGCTGCGGCCGGGGGAGGGGCGTCGGCGGGAA
GGCGTGGCGGCGACGCACCGCGCGGGGCAACGGGAAACTCGAACGGGCGC
TTGTCCCTGCGCGAGCTCCGGTCGGCGGACGAGGCTCGCAGGTTCTACGC
TGACGAGCGCTCGAGGGCGCGAGCAGACACCGCGGTGGCCCCGTCCGATC
ACCACGACGCCGCTTCGGCGGCGGCAGCAGCAGCAGCGGGGGGGACGCGT
GCCTCCAACGAGAGAGCACCGGCCAGCACCAGAAGCAGCAAGAGCAGGAG
CGGCGGGAACAGCAGCAGCAGCAGTAGCAGCAGCAAAAGCAGGAGCGGCA
GCGGCAACCGCAGAGGCCACCGCCGAGCGAGAAACGGCGGGCGAGCGGCG
AGCTCAGACGAGCGGTGGGTAGCACGCGTGGCTGCGGCCGGGGGAGGGGC
GTCGGCGGGAAGGCGTGGCGGCGACGCACCGCGCGGGGCA
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