mRNA_L-elsbetiae_contig1898.5575.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1898.5575.1
Unique NamemRNA_L-elsbetiae_contig1898.5575.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1898.5575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1898contigL-elsbetiae_contig1898:8880..12486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size1160
Cds size894
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1898.5575.1prot_L-elsbetiae_contig1898.5575.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1898 10894..12396 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815788.3631666-UTR-L-elsbetiae_contig1898:8879..90031622815788.3631666-UTR-L-elsbetiae_contig1898:8879..9003Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1898 8880..9003 +
1691683103.1584153-UTR-L-elsbetiae_contig1898:8879..90031691683103.1584153-UTR-L-elsbetiae_contig1898:8879..9003Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1898 8880..9003 +
1622815788.3764663-UTR-L-elsbetiae_contig1898:10841..108931622815788.3764663-UTR-L-elsbetiae_contig1898:10841..10893Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1898 10842..10893 +
1691683103.1709292-UTR-L-elsbetiae_contig1898:10841..108931691683103.1709292-UTR-L-elsbetiae_contig1898:10841..10893Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1898 10842..10893 +
1622815788.415073-UTR-L-elsbetiae_contig1898:12396..124861622815788.415073-UTR-L-elsbetiae_contig1898:12396..12486Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1898 12397..12486 +
1691683103.1990418-UTR-L-elsbetiae_contig1898:12396..124861691683103.1990418-UTR-L-elsbetiae_contig1898:12396..12486Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1898 12397..12486 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815788.3880043-CDS-L-elsbetiae_contig1898:10893..109631622815788.3880043-CDS-L-elsbetiae_contig1898:10893..10963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1898 10894..10963 +
1691683103.1797245-CDS-L-elsbetiae_contig1898:10893..109631691683103.1797245-CDS-L-elsbetiae_contig1898:10893..10963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1898 10894..10963 +
1622815788.401267-CDS-L-elsbetiae_contig1898:11572..123961622815788.401267-CDS-L-elsbetiae_contig1898:11572..12396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1898 11573..12396 +
1691683103.188274-CDS-L-elsbetiae_contig1898:11572..123961691683103.188274-CDS-L-elsbetiae_contig1898:11572..12396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1898 11573..12396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1898.5575.1

>prot_L-elsbetiae_contig1898.5575.1 ID=prot_L-elsbetiae_contig1898.5575.1|Name=mRNA_L-elsbetiae_contig1898.5575.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=298bp
MHPQPESEPLLPLNSAPSRPGTSGRTTRSTCLCVLEAVLAAIVFAYTALD
LLLSAKIGYSDHDDGGFVLKAFLYAAFVPLLLVNGVFGIVLFTTGCATRT
GVAHSLGRSNPQGAPSPGDADRVERDRLAESLERDGVDLFDFDEFATTSM
SILLGISSLFLSQLVEVVFIYPYAIYVVLSTFSFGNSGGSGNVAIWLVLI
VLALLTFRRLFYRFRFVEKFRKLEQSCRTQPSCNLVRTVLILSSIAYGIV
LYHSPAPSVLRWSLIVTHAVRALKLVISLRDQREGMEAATDVSRDIL*
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mRNA from alignment at L-elsbetiae_contig1898:8880..12486+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1898.5575.1 ID=mRNA_L-elsbetiae_contig1898.5575.1|Name=mRNA_L-elsbetiae_contig1898.5575.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3607bp|location=Sequence derived from alignment at L-elsbetiae_contig1898:8880..12486+ (Laminarionema elsbetiae ELsaHSoW15)
CCGTTGCACACCTTCCTGGCTGCTGGCCTGTCGTTTGATCGGGAAGATGC
AGGGATAGAACCCTTGCTTCCTACGCGGGGGAAAGAAGGGGGAGAGACAC
GTTCTGCACGAGGGGTTAAAAAAGGTGGGTTATTTCGGGATATCTATCCC
CGGGACTGTCGATTGCCGTGACAGCCCTGGTACCATACAGGAACGCCCTC
AACTAGACAACTAGACCCTCAACCCTCAACGCACCTCACTTATCTCAGGG
CGGTGGATGGGGGTGCATAGTTACGTTACATACGCCCCCCCAAGAGACAT
ATATATAGATATAGTCCGGTGTGAGAAAGTGAGAACTTGGTCAAGCCATT
ACATAATTACCCCGTCGGGTAGAGGCTGGTAGAGGTACCACAGGATCGCA
GTATGCGTTTCGTCTACCGCCACAGGTCGCATTGGAACCCACTTTTCCAG
CTTACACAGCTATAAATGCGCTCCGCTTGGCAGCCGGAGTAGAAATAAAG
GCCGCCACACGACGCAATCAACTCTAGGATGCGTCGGTCGTGGTGCGTCT
GGCGAATTGGAGATGTGGTTTGGTGTGTGGGTGTGTCGACGGTAGTCGTG
CACGAATCAAGGTTGTTGTGGCAAACGATACACGCGCTCTGACTTAGAGC
ACTGCGTGATTTCTGACAACGAATGTGCGTACGTCAGACACAACCAAGAA
CTCCCTACAAATGAACTGAGCGTATCCTGCACACCCGTGAGGTGCGCTGC
TACAGCTCTCCCGGTTGACAAGCTCGTGCCCTGAGCTGTACCGGATGCCT
CTTGGTGCAAGCTGCGCAAGAGGTCTGAAGAAGCAGAGATGTTTGATGCA
ACTATATTGTTTCATCCGAATAGGCGCTTGAATAGACCGGAAGGAAAACA
GAGTGAGAAGGGTGGGCTAGCTCCGGGGCTGCACCACATCTCGAACTTCC
TACCGACGGAACACATCCTTGAACAGATATCCGACGTGCTAACCGATCAC
AGAACTGCACACAAGATTCTCGTTCAAACTACTGCTGGCGTATGCACATA
TGCGTATCTAGTCCGTGCAACATACGGATCAACCAATCAGATGTATCTTT
AGATTACTTCTAGAATCTTCCATATTCTACGGAGATCAGCGGCGGTGTAA
CCGCTAGGTCCTGCCATGCTGCTCCTGCTGCTGTACGCTGTACAACAGTT
TGTCATAGAACATAAACAGCACACCAGTGCTACTGCGTGATTCTGATATG
CAGGTGAGCGAGATTGTACGTTCACCGCATCTACTGCATACATACGTGCG
TACGTTGCGGTACAATAATGCAACAGTGCGTGCCAGGATTGCTCACGTAT
CTCCACCCACCAAGCCAGCCTATCGCTTCGCAAGGCCTTCGGCAAATTCA
GAGGTTCTCGATTTTCTGTCCATGTAGGTGGTGGCCAGACACTGCAGCTG
CAAAGGCGCTCCCACTGCGACAACGCCACAGCTTTCTCGGGCCTTTCACA
AAATGGGCGGTCCTCACACGTCGATGATGGCGGTGGTTGCTGCTATGTAT
GGCACTCTGTGCAGCCGAGCAGCGCTTGCGATATCTCACCAACTAAAACT
TCTGATCGGTGGTTCGTAGATACGTAAATAACGAGGCCGTCGCTTCGCCC
TGGGGTCCCGCCTGCCGCAAAGAAATGGGGTTGCGGTCCACAAGAGGAGC
CTTGAGCCTTTCCCTTGGTCAAATAAAAAAATACTCGAGAGGAGCCGAGA
AGGGTCATGGGCCGGGCTTGGCAAGCAACCAGCGACGATTTGCCGAGCGC
GCGGAGCCGCCAGCAGTATTTATTATACTCACCCGTACTTTCCCAAACGC
TTTAGGTACAGCCAGTGCGTTTGAGTGTAGTCCATAAAGCTTGGAGTCCC
TGTTATTCTCTAATCGGGCCGTCCGTCGGTTCCGTTCGTGTCGTGCTGCC
GCTCTCCCGCAGGTGGCAGTTCCGTCGTGCTTCGGCACCCTCGCGTGCTT
CCACTGTTCGAAGTATGCACCCTCAACCTGAATCAGAACCTCTTTTACCT
CTGAATTCGGCTCCTTCGCGACCCGGGACCTCAGGTAGGCGAGGTTTGTA
CAGGCTGTGTGTGACAACTCGCAATATGTGACGTTCGCAGCCCCTCCCAC
AGCAGTACGGTAGTACAGGTGGTGAAAGACACTATGATTTCTTCAGATAC
GCACAGGTCGGATGTATGGCTCAGGGGGTGTGCGTTCAGAGCACCGTGTG
ACACCTACTACGTGATTAAGTCAATACCGCACATATCGGGCTTATCGCAC
AGGAGTGTGCGCTGCAAGAGCAGAACCAAAACATTGAATTCGTTTCTCGC
ACGCGGGTCGGGGCTATCGTACATGTCGGCGCTATCGCACACCAGTGCGA
TAAAAAAGCTAGTTATAAAGGATTACATTACTTCTTACACTCCATCTTTC
CGCTAGAATCGCTGTAGTGTCACACATGCCTTACAGAGCCGCACTTTTTC
CTTCTGAATGTCGGAAATTTCGATGCCCACAATTACCTACCACTTTTTTC
TCTCCCGATGATTACCTTGGAATCGCTTCCAATGAAGCGGAGGTGCGGAG
TGCCCAAAACCTTGAAACCTTAATGATTTTGAGATTTTACGAAGATTCTT
ACCCTCACCCCCGGTCGGTCGGTGTTTACTGTCGCGTGGGCAGGTCGAAC
TACGCGCAGCACGTGCTTGTGCGTTCTAGAGGCTGTCCTGGCCGCCATCG
TCTTCGCATACACGGCTCTCGACTTGTTGCTCTCGGCGAAAATAGGTTAC
TCCGACCACGACGATGGCGGCTTTGTACTCAAGGCTTTCCTTTACGCCGC
CTTCGTGCCACTCTTGTTGGTAAACGGAGTCTTTGGTATCGTACTTTTTA
CCACTGGTTGTGCGACAAGGACTGGCGTGGCTCACTCCCTTGGCAGGTCG
AACCCACAGGGAGCGCCAAGTCCAGGAGATGCCGATCGCGTAGAACGTGA
CAGGCTGGCAGAATCTCTCGAGCGTGATGGTGTGGATCTTTTTGATTTCG
ATGAGTTTGCGACAACATCTATGAGCATCTTGCTTGGAATTTCTTCGTTA
TTTTTGTCGCAGCTGGTCGAAGTCGTATTTATCTACCCGTATGCCATTTA
CGTTGTCCTTTCCACTTTTAGTTTTGGGAATAGTGGAGGGTCAGGTAATG
TGGCGATTTGGCTTGTTTTGATCGTTTTGGCGTTGCTTACCTTCAGGCGC
TTGTTCTACAGGTTCAGGTTTGTTGAGAAGTTCAGGAAGTTGGAGCAGTC
GTGCCGTACCCAGCCCAGTTGCAACCTGGTACGAACCGTGCTTATACTAT
CTAGCATTGCCTACGGTATCGTTTTGTACCACTCTCCGGCCCCTTCCGTG
TTGCGGTGGAGCTTGATCGTGACGCACGCTGTGAGAGCGCTTAAGCTTGT
GATATCCCTCCGTGATCAGAGAGAAGGCATGGAGGCAGCTACAGATGTTT
CTCGGGATATTCTATGAGGTAGTAGGTGTAAGTTTAAAGAATTAGAAGTA
CAATACAAGGGTTCGTTCATCGTTTGACTTTCGTCTGTGACCACCGCTCC
ATGGGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1898:8880..12486+

>mRNA_L-elsbetiae_contig1898.5575.1 ID=mRNA_L-elsbetiae_contig1898.5575.1|Name=mRNA_L-elsbetiae_contig1898.5575.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1788bp|location=Sequence derived from alignment at L-elsbetiae_contig1898:8880..12486+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACCCTCAACCTGAATCAGAACCTCTTTTACCTCTGAATTCGGCTCC
TTCGCGACCCGGGACCTCAGATGCACCCTCAACCTGAATCAGAACCTCTT
TTACCTCTGAATTCGGCTCCTTCGCGACCCGGGACCTCAGGTCGAACTAC
GCGCAGCACGTGCTTGTGCGTTCTAGAGGCTGTCCTGGCCGCCATCGTCT
TCGCATACACGGCTCTCGACTTGTTGCTCTCGGCGAAAATAGGTTACTCC
GACCACGACGATGGCGGCTTTGTACTCAAGGCTTTCCTTTACGCCGCCTT
CGTGCCACTCTTGTTGGTAAACGGAGTCTTTGGTATCGTACTTTTTACCA
CTGGTTGTGCGACAAGGACTGGCGTGGCTCACTCCCTTGGCAGGTCGAAC
CCACAGGGAGCGCCAAGTCCAGGAGATGCCGATCGCGTAGAACGTGACAG
GCTGGCAGAATCTCTCGAGCGTGATGGTGTGGATCTTTTTGATTTCGATG
AGTTTGCGACAACATCTATGAGCATCTTGCTTGGAATTTCTTCGTTATTT
TTGTCGCAGCTGGTCGAAGTCGTATTTATCTACCCGTATGCCATTTACGT
TGTCCTTTCCACTTTTAGTTTTGGGAATAGTGGAGGGTCAGGTAATGTGG
CGATTTGGCTTGTTTTGATCGTTTTGGCGTTGCTTACCTTCAGGCGCTTG
TTCTACAGGTTCAGGTTTGTTGAGAAGTTCAGGAAGTTGGAGCAGTCGTG
CCGTACCCAGCCCAGTTGCAACCTGGTACGAACCGTGCTTATACTATCTA
GCATTGCCTACGGTATCGTTTTGTACCACTCTCCGGCCCCTTCCGTGTTG
CGGTGGAGCTTGATCGTGACGCACGCTGTGAGAGCGCTTAAGCTTGTGAT
ATCCCTCCGTGATCAGAGAGAAGGCATGGAGGCAGCTACAGATGTTTCTC
GGGATATTCTATGAGTCGAACTACGCGCAGCACGTGCTTGTGCGTTCTAG
AGGCTGTCCTGGCCGCCATCGTCTTCGCATACACGGCTCTCGACTTGTTG
CTCTCGGCGAAAATAGGTTACTCCGACCACGACGATGGCGGCTTTGTACT
CAAGGCTTTCCTTTACGCCGCCTTCGTGCCACTCTTGTTGGTAAACGGAG
TCTTTGGTATCGTACTTTTTACCACTGGTTGTGCGACAAGGACTGGCGTG
GCTCACTCCCTTGGCAGGTCGAACCCACAGGGAGCGCCAAGTCCAGGAGA
TGCCGATCGCGTAGAACGTGACAGGCTGGCAGAATCTCTCGAGCGTGATG
GTGTGGATCTTTTTGATTTCGATGAGTTTGCGACAACATCTATGAGCATC
TTGCTTGGAATTTCTTCGTTATTTTTGTCGCAGCTGGTCGAAGTCGTATT
TATCTACCCGTATGCCATTTACGTTGTCCTTTCCACTTTTAGTTTTGGGA
ATAGTGGAGGGTCAGGTAATGTGGCGATTTGGCTTGTTTTGATCGTTTTG
GCGTTGCTTACCTTCAGGCGCTTGTTCTACAGGTTCAGGTTTGTTGAGAA
GTTCAGGAAGTTGGAGCAGTCGTGCCGTACCCAGCCCAGTTGCAACCTGG
TACGAACCGTGCTTATACTATCTAGCATTGCCTACGGTATCGTTTTGTAC
CACTCTCCGGCCCCTTCCGTGTTGCGGTGGAGCTTGATCGTGACGCACGC
TGTGAGAGCGCTTAAGCTTGTGATATCCCTCCGTGATCAGAGAGAAGGCA
TGGAGGCAGCTACAGATGTTTCTCGGGATATTCTATGA
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