Homology
BLAST of mRNA_L-elsbetiae_contig1897.5574.1 vs. uniprot
Match:
A0A6H5JPS6_9PHAE (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPS6_9PHAE)
HSP 1 Score: 136 bits (342), Expect = 9.540e-39
Identity = 71/101 (70.30%), Postives = 78/101 (77.23%), Query Frame = 3
Query: 3 TVENIFDFSFFVKSGEGHISIDEETKLPQAKFTHILSGEDNAPPQKS---QQWLMSFTKADFDELKELYNMEGSHIPHRNDGPRSDYYDPLRDGNRESNRQ 296
TVEN+FDFSFFVKSGEGHI+ID ETKLPQ KF D APP S +QWLMSFT ADF ELKELY ME S+ HR++GP+SDYYDPL GNRESNRQ
Sbjct: 14 TVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTPSGD-APPAASGDAKQWLMSFTPADFRELKELYGMEESNFEHRSEGPKSDYYDPLTHGNRESNRQ 113
BLAST of mRNA_L-elsbetiae_contig1897.5574.1 vs. uniprot
Match:
D7G069_ECTSI (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G069_ECTSI)
HSP 1 Score: 134 bits (336), Expect = 1.880e-34
Identity = 70/101 (69.31%), Postives = 77/101 (76.24%), Query Frame = 3
Query: 3 TVENIFDFSFFVKSGEGHISIDEETKLPQAKFTHILSGEDNAPPQKS---QQWLMSFTKADFDELKELYNMEGSHIPHRNDGPRSDYYDPLRDGNRESNRQ 296
TVEN+FDFSFFVK GEGHI+ID ETKLPQ KF D APP S +QWLMSFT ADF ELKELY ME S+ HR++GP+SDYYDPL GNRESNRQ
Sbjct: 346 TVENLFDFSFFVKRGEGHITIDPETKLPQVKFDPSTQSGD-APPAASGDAKQWLMSFTPADFRELKELYGMEESNFEHRSEGPKSDYYDPLTHGNRESNRQ 445
BLAST of mRNA_L-elsbetiae_contig1897.5574.1 vs. uniprot
Match:
A0A835YSI9_9STRA (Non-structural maintenance of chromosomes element 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSI9_9STRA)
HSP 1 Score: 77.0 bits (188), Expect = 9.950e-14
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 3
Query: 3 TVENIFDFSFFVKSGEGHISIDEETKLPQAKFTHILSGEDNAPPQKSQQWLMSFTKADFDELKELYNMEGSH--IPHRNDGPRSDYYDPLRD 272
TVEN+FDF+F++K+G +++D+E +FT ILS +D A ++Q ++SFT+ DF L EL +EG IP R G SDYYDPL D
Sbjct: 277 TVENMFDFTFYIKNGLTGLAVDKEAGKLNTQFTRILSQDDAASRSSNKQSVLSFTRQDFKNLIELCGLEGQEPMIPARPMGAGSDYYDPLVD 368
BLAST of mRNA_L-elsbetiae_contig1897.5574.1 vs. uniprot
Match:
A0A835Z541_9STRA (Non-structural maintenance of chromosomes element 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z541_9STRA)
HSP 1 Score: 72.0 bits (175), Expect = 4.140e-12
Identity = 43/91 (47.25%), Postives = 58/91 (63.74%), Query Frame = 3
Query: 3 TVENIFDFSFFVKSGEGHISIDEETKLPQAKFTHILSGEDNAPPQ-KSQQWLMSFTKADFDELKELYNMEGSH--IPHRNDGPRSDYYDPL 266
TVEN+FDF+ F+K G +S+D E A+FT IL+ +D A + K++Q ++SFTK DF +L EL +EG IP R SDYYDPL
Sbjct: 203 TVENMFDFTDFIKHGLTGLSVDTEAGTLNAQFTRILTQDDAAAARSKNKQAVLSFTKQDFVDLIELCGLEGQEPTIPDRRTVDGSDYYDPL 293
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1897.5574.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 9.54e-39 / Id = 70.30 Expect = 1.88e-34 / Id = 69.31 Expect = 9.95e-14 / Id = 45.65 Expect = 4.14e-12 / Id = 47.25 Sequence A0A6H5JPS6_9PHAE D7G069_ECTSI A0A835YSI9_9STRA A0A835Z541_9STRA
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota
Seed ortholog score 75.5
Seed ortholog evalue 7.6e-12
Seed eggNOG ortholog 2880.D7G069
Hectar predicted targeting category no signal peptide or anchor
GOs GO:0000793,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0030915,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0106068,GO:1901360,GO:1902494,GO:1990234
EggNOG free text desc. DNA repair
EggNOG OGs COG5125@1,KOG2866@2759
COG Functional cat. O
Best tax level Eukaryota
Best eggNOG OG NA|NA|NA
Exons 3
Model size 449
Cds size 144
Stop 1
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815788.2740846-UTR-L-elsbetiae_contig1897:8962..9033 1622815788.2740846-UTR-L-elsbetiae_contig1897:8962..9033 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig1897 8963..9033 +
1691683103.1039772-UTR-L-elsbetiae_contig1897:8962..9033 1691683103.1039772-UTR-L-elsbetiae_contig1897:8962..9033 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig1897 8963..9033 +
1622815788.286294-UTR-L-elsbetiae_contig1897:10396..10480 1622815788.286294-UTR-L-elsbetiae_contig1897:10396..10480 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig1897 10397..10480 +
1691683103.1143057-UTR-L-elsbetiae_contig1897:10396..10480 1691683103.1143057-UTR-L-elsbetiae_contig1897:10396..10480 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig1897 10397..10480 +
1622815788.3262122-UTR-L-elsbetiae_contig1897:11396..11546 1622815788.3262122-UTR-L-elsbetiae_contig1897:11396..11546 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig1897 11397..11546 +
1691683103.1480348-UTR-L-elsbetiae_contig1897:11396..11546 1691683103.1480348-UTR-L-elsbetiae_contig1897:11396..11546 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig1897 11397..11546 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815788.300066-CDS-L-elsbetiae_contig1897:10480..10496 1622815788.300066-CDS-L-elsbetiae_contig1897:10480..10496 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1897 10481..10496 +
1691683103.1263-CDS-L-elsbetiae_contig1897:10480..10496 1691683103.1263-CDS-L-elsbetiae_contig1897:10480..10496 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1897 10481..10496 +
1622815788.3141124-CDS-L-elsbetiae_contig1897:11268..11396 1622815788.3141124-CDS-L-elsbetiae_contig1897:11268..11396 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1897 11269..11396 +
1691683103.1382146-CDS-L-elsbetiae_contig1897:11268..11396 1691683103.1382146-CDS-L-elsbetiae_contig1897:11268..11396 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1897 11269..11396 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1897.5574.1
>prot_L-elsbetiae_contig1897.5574.1 ID=prot_L-elsbetiae_contig1897.5574.1|Name=mRNA_L-elsbetiae_contig1897.5574.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=48bp
MSFTKADFDELKELYNMEGSHIPHRNDGPRSDYYDPLRDGNRESNRQ* back to top mRNA from alignment at L-elsbetiae_contig1897:8963..11546+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1897.5574.1 ID=mRNA_L-elsbetiae_contig1897.5574.1|Name=mRNA_L-elsbetiae_contig1897.5574.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2584bp|location=Sequence derived from alignment at L-elsbetiae_contig1897:8963..11546+ (Laminarionema elsbetiae ELsaHSoW15)AGACCGTCGAGAACATTTTCGACTTCTCTTTCTTCGTCAAGAGCGGAGAG
GGACACATCTCTATCGACGAG GTCAGTTCTTGCGTCATGCTTATACATAT
GTGAATGTATGTATGCTGTCTTCACATTAAAAACCGTTGCGATCTCTCCA
TCCAGTATGTACACCTCTCAATGTCCGTACTACTCCAACACTTGATGCGG
TCAATTCCCGTGGTCACAGGCTAACTTTATACCGAAGAAAAGGTACACGA
AAAATAAAATGGACCCCGAAGGGCCAGCAAAGCAACAATAAATACACTTC
GTATCTACGTAATTTTACACCCACGGCTTGACTCTGTTTTTTTTTTTTCT
TCTTCTTGACATTAATTTCCAGTGCTCGATGGGGCTCTTTGCCACGAGGG
CATCTTGCCAGAGTACTGAACCGTGGTCACACAGAAGGGTTCCTTCCCCC
GAGGCCCCCACTCCCCCCCTTCTGCGGTGCTTGCCTAAGTTTTTTAATGG
ATGTAGACAGTCCCGTTGACAGTCCCGTTGACAGCCCCCATTCCCCCCTT
CTGCGGTTGCTCGCCTAACATTTTTGTCGCGAGAAGGGTTCAGCCGTTTT
CCTTTTCCCTCGTCGACGGTGAGGTCGAAGGTTGTGTATATTCTGCTGCG
GAGAGAAAATCGCACCGGTTTTCTAGGTGGAATATTTCTGGGCAAAACGA
CGACCCTTACATATGCACGCCTGCCCAAACGAAAACACGCCCGAGGCTCA
CCTTGTGCCAGGCGCTCGCTCGGTTTTGTGTCCAGGTCGGATGGGCTGAG
GTCGATGTCGATGTCGATGTCGATGCCCCACGTTCAAGGCTGGCAAGAAA
ACCTGTCGAAAGTTTTTTTATTGTAGATATGTATAACTTGTCTCTTTTAT
CCCCCGAGACGTGCGGCAGTTTCCTTTGGGCGTAAAAGGAGTAAATATTA
TAGTATGTATGTATGTATGTATGTTTGTATGTACGTGCCTGTTCCCCCCG
TTGTTGCGGAGGATGTTTATTCGTTTTCAGCGGGAGAGGTTACTGATTTT
GGTGCTCGCCTCTCTCAAGTTTTGAGGCAAATGACCACACGCACACCTTT
CGGTCGCCCTGTATATATTTTGGGAGGTTCGCCATTGCGTTCGAGACTCG
CCCCCCCAACCGCTGTTTTGTGTCGCGGGAGGGACAAGAGGATTAAAAAC
AGCTGTTGTGCCCCAAACCGTCTTACTTTTTGCTCTGCACTCCTGTCTGT
TTTTTTCGGTTCTAATTTACGGGATATTAAAATATGTTTTCCTTTTTTTT
TCCACGTCTTCATGGCATCAATTTGAGCATGTGCGATGGGTTCCTGCACA
ACAGCAGTAGTCTAGTCGCGATTGATGGCATGCCAAACCTCCCCAATCGC
TCCCCCGTGCTGTTTCTTTCGCTTTTCTATCCAGGAGACCAAACTTCCCC
AGGCTAAGTTCACCCATATTCTAAGCGGCGAGGACAACGCCCCGCCGCAA
AAGTCCCAGCAGTGGTTG ATGTCCTTCACGAAAG GTGGGGTTCTTGTACT
TGCTTGCTTCGGGACGGCTTTGCCTGGTGGTGGGCTGTCTCGCTCGCGCA
TCTTCTCTGCTTGCGGCAAAGCGCCGACGGGGAGACTTGTGGGGCCATTT
GCATCCATTGGAACCCATCCGCGCTGCTGCTGCTATGTACTGTTTCAACG
GCATGCGTTTGCAGCATGTCCAGAGCAGGCTCTGCACCCCCGAAGGGGCA
CGCCCGTTCTCTGCGTGTGTGTTGTCTCAGTGCTGTTTCCTCAGCATGGG
TTCCTGATAACGTGTTTTAAGTCCGCTTACAAAAAAAGGCTTAGCTCAGC
CAGTTTGAACTGTGTTTGATTGGGTAAAAAATACTGGAGTAGGGTACATG
CACATGCGTGGCTGTCTCGGCGAAAACTGCTCTCGCTCAACCCGCGAGGC
TGGAACATAGAGACGAGGAAGGCTACGGCCCGGAGCGTTTATTTCTTGCT
TTTCTTCGTCTCGATCCCTCTTCTCTTTCTCTCCTTGCTCCGCCCCCCAA
ATCATCTGTTCTATTTTCTACGTACTTGTAAATGACTTTGGTGTCAACTG
TTATTTTCAGCTGAACACGCTCTCATTGCATATTTATATATATTTTCCCT
CCGACCCCTTCCCCCGCCCCCTCGTACCGACGCTGCTGTGTTCCTTCTTT
TGTTGTTCGTCGCCGCGGCGTGGTCGCTGTGATGTCCCCTTGCATTTGTT
TTCGCCACGTGCAACTGCTGTTGTTGTACCGTCATCCGTGTCTTCCTTGG
ATTCAGCGGACTTCGACGAGCTCAAAGAGCTGTACAACATGGAGGGGTCG
CACATCCCGCACCGCAACGACGGGCCACGGTCGGACTATTACGACCCCCT
CCGTGACGGCAACCGCGAGTCCAACCGCCAATGA AACGAACTTGCGGGTG
TATCGATAATCGGTCGGATTGTGGGAGTGTAGTCTCCGGTCGCCCCGGTG
GTCTAGTGGTTTAACCTCGAACCCACAGCAAAGTCTGTAGCTCAATTCCA
AGCAGGATGTGTTTCTTTTGCGACTTTGCAGGTG back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1897:8963..11546+
>mRNA_L-elsbetiae_contig1897.5574.1 ID=mRNA_L-elsbetiae_contig1897.5574.1|Name=mRNA_L-elsbetiae_contig1897.5574.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=288bp|location=Sequence derived from alignment at L-elsbetiae_contig1897:8963..11546+ (Laminarionema elsbetiae ELsaHSoW15) ATGTCCTTCACGAAAGATGTCCTTCACGAAAGCGGACTTCGACGAGCTCA AAGAGCTGTACAACATGGAGGGGTCGCACATCCCGCACCGCAACGACGGG CCACGGTCGGACTATTACGACCCCCTCCGTGACGGCAACCGCGAGTCCAA CCGCCAATGACGGACTTCGACGAGCTCAAAGAGCTGTACAACATGGAGGG GTCGCACATCCCGCACCGCAACGACGGGCCACGGTCGGACTATTACGACC CCCTCCGTGACGGCAACCGCGAGTCCAACCGCCAATGA back to top