mRNA_L-elsbetiae_contig1897.5573.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1897.5573.1
Unique NamemRNA_L-elsbetiae_contig1897.5573.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1897.5573.1 vs. uniprot
Match: D7G069_ECTSI (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G069_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 8.140e-21
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:   25 KGKKVKQNKDQTQTRIANMKEAEKHSDSFNSNQDMFETFINPKSFTQTVENIFDFSFFVKSGEGHISID 231
            KGKK KQNKDQTQ RIA M+E EK  +   S +DMFET +NPKSFTQTVEN+FDFSFFVK GEGHI+ID
Sbjct:  301 KGKKAKQNKDQTQMRIAKMREHEK--EDAGSKKDMFETLVNPKSFTQTVENLFDFSFFVKRGEGHITID 367
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BLAST of mRNA_L-elsbetiae_contig1897.5573.1 vs. uniprot
Match: A0A6H5JPS6_9PHAE (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPS6_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 4.750e-13
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:  127 MFETFINPKSFTQTVENIFDFSFFVKSGEGHISID 231
            MFET INPKSFTQTVEN+FDFSFFVKSGEGHI+ID
Sbjct:    1 MFETLINPKSFTQTVENLFDFSFFVKSGEGHITID 35
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BLAST of mRNA_L-elsbetiae_contig1897.5573.1 vs. uniprot
Match: G5ADR1_PHYSP (Non-structural maintenance of chromosomes element 4 n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5ADR1_PHYSP)

HSP 1 Score: 48.1 bits (113), Expect = 5.920e-5
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:  121 QDMFETFINPKSFTQTVENIFDFSFFVKSGEGHISIDE 234
            Q +F+  INPKSFTQTVEN+FD SF V++    + IDE
Sbjct:   63 QPLFDVVINPKSFTQTVENLFDTSFLVRNSAAEVGIDE 100
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BLAST of mRNA_L-elsbetiae_contig1897.5573.1 vs. uniprot
Match: A0A225VE20_9STRA (Non-structural maintenance of chromosomes element 4 (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VE20_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 7.060e-5
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:  112 NSNQDMFETFINPKSFTQTVENIFDFSFFVKSGEGHISIDE 234
            N    +F+  INPKSFTQTVEN+FD SF V++    + IDE
Sbjct:   49 NDRHSLFDMVINPKSFTQTVENLFDTSFLVRNSSAEVGIDE 89
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1897.5573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G069_ECTSI8.140e-2173.91Non-structural maintenance of chromosomes element ... [more]
A0A6H5JPS6_9PHAE4.750e-1391.43Non-structural maintenance of chromosomes element ... [more]
G5ADR1_PHYSP5.920e-557.89Non-structural maintenance of chromosomes element ... [more]
A0A225VE20_9STRA7.060e-553.66Non-structural maintenance of chromosomes element ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1897contigL-elsbetiae_contig1897:6124..9034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue8.9e-18
Seed eggNOG ortholog2880.D7G069
Hectar predicted targeting categoryother localisation
GOsGO:0000793,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0030915,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0106068,GO:1901360,GO:1902494,GO:1990234
EggNOG free text desc.DNA repair
EggNOG OGsCOG5125@1,KOG2866@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionNon-structural maintenance of chromosome element 4, C-terminal
Ec32 orthologEc-05_004030.1
Exons3
Model size235
Cds size234
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1897.5573.1prot_L-elsbetiae_contig1897.5573.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1897 6124..9033 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815788.1962352-CDS-L-elsbetiae_contig1897:6123..62071622815788.1962352-CDS-L-elsbetiae_contig1897:6123..6207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1897 6124..6207 +
1691683103.074655-CDS-L-elsbetiae_contig1897:6123..62071691683103.074655-CDS-L-elsbetiae_contig1897:6123..6207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1897 6124..6207 +
1622815788.2158747-CDS-L-elsbetiae_contig1897:8199..82801622815788.2158747-CDS-L-elsbetiae_contig1897:8199..8280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1897 8200..8280 +
1691683103.0860946-CDS-L-elsbetiae_contig1897:8199..82801691683103.0860946-CDS-L-elsbetiae_contig1897:8199..8280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1897 8200..8280 +
1622815788.2310193-CDS-L-elsbetiae_contig1897:8964..90331622815788.2310193-CDS-L-elsbetiae_contig1897:8964..9033Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1897 8965..9033 +
1691683103.094274-CDS-L-elsbetiae_contig1897:8964..90331691683103.094274-CDS-L-elsbetiae_contig1897:8964..9033Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1897 8965..9033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1897.5573.1

>prot_L-elsbetiae_contig1897.5573.1 ID=prot_L-elsbetiae_contig1897.5573.1|Name=mRNA_L-elsbetiae_contig1897.5573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
VRPDVDGGKGKKVKQNKDQTQTRIANMKEAEKHSDSFNSNQDMFETFINP
KSFTQTVENIFDFSFFVKSGEGHISIDE
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mRNA from alignment at L-elsbetiae_contig1897:6124..9034+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1897.5573.1 ID=mRNA_L-elsbetiae_contig1897.5573.1|Name=mRNA_L-elsbetiae_contig1897.5573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2911bp|location=Sequence derived from alignment at L-elsbetiae_contig1897:6124..9034+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCGTCCGGACGTGGACGGGGGCAAGGGCAAGAAGGTCAAGCAGAACAA
GGACCAGACGCAGACGCGCATCGCCAACATGAAGGTGAGCTGTTGGAGGG
CAGGGCAGGGCAGGCAGGCAGGTAGAGACATCGGGTCACTGATGCGCATA
GGATGTTTGGAAGTAGAATCGATGTGCTTCTTGAGGAACATGCACGAGAG
AGAGTGTGTGTGTGTGTATGTGTGTGAGAGAGAGAGACAGACAGACAGAC
AGACAGACAGACAGACAGAGGCAGATAAAAGGCGGAGACAGGTAAGAGAC
ATGAGAGAGAGGAAACATGTTTATTTTCTTGTCGTACATGAGAACATACA
GTGAGGGGTACGTTGCATGCATTCGACCGGCGAAATTTCCCAGGGCGGTA
GACACGGTTTGAAAGGGTCCCGCCACACAAAACGTTTTATTTTTTTATTT
TTTTTATGACGCTTTCTAAAAGAAAAAAATATGCGTTGCTCCTTTGCGAC
CGCGATTTATGGAGCAGGTATCTAGGCGTAAGATGCTCGTCCCCGTCGCC
CCCAGCTTTGAGAACGCCCTTTGTGGCTCATTCGTGGCTCTTTTTCTCCA
ACAGCAGGTAGCTAGGTACACACGAGCTGCGAAGCGCGTGTGTCTTACCT
ACATTCTCACTCTCTCGTTACAGTCTATAGACCCCTGGTTTTGCTCCCAA
TATATCATGTTAAAATATATGGGGTGTGTTTTATTTTATTTTATTTCGTT
ATTTTCTAGTTTGGGGGAGGAGAAAAAAAAAACAAAAAGACTGAGGATAT
TGTGCGGGGCAATATATAATATATATGGGGTGTTTGTGTATGTGTCCTTC
CCATTTATTTTGGCGACAGTCCCCCCAAGTAGAGACGTGTACTACACCTT
GCGGTGTACTTGGAGGTACTACACTTTGCAGTGCATTTGTCTGTACAACT
AGAACCAACCGGGGTCACACAGGAGGAGGTGAACACTGGAGCTTTTTCTT
CTTTTTTAATTTCTTTTTTTGCCCCACCTTCCTCCTGCGGTTCTTGCCTT
GGGTTTTATCGCGAGAAGGGTTCAGCTGTCTCTTTCCCTCGTCAACGTGA
TTACGTCGAGGTTTGGTACTCACGAGCTTCAGCTTGGAATTGAACTCCAG
ACTTTGCTGCTAGTGGGTTCGAGGTTAAACCACTAGACCACCGGGTGTTT
GATTTTATTTAATTATTAATTATTTGGTTTGGGGTGTGGAAAAGAGGGTT
TCGTCCTCGACAGACGTTAGTGTGATCCGACCCTTTATGAAGGTGGTACC
CACATTACCCCCCCCTTTTTTTCGAGTCTTTTTCTTGGTTGCTAGGCAAG
AAGGAGGCTCTTTAGGGGTGACCGGAACCCGACCGGCTGGCGGCGAGTCG
TCCACCGTCTTTTTCCAACATTCTTCTTTGTGCGTGTTTTTAGCGGGTCC
GCCACTTCCGCTACAGCGCCTAGAAGTTACGAACTCGATTATCAGGTCTT
GGTTTCTATCCCCCACGTTGTTTCTTTTTTTCCAAGAGGAAAGTTCTTTT
AGACTTTTTATCTTGAAAAAGAAATCTTCATGTAGAGCTTCGAACTCGGG
ACTTTGTCCACCACAAACCAGTATCGAATCGTCGACGCCATTGTGGAAAA
GAGGGTTTCGTCCTCGACAGACGTTAGTGTGATCCGACCCTTTATGAAGG
TGGTACCCACAGGGGCAGGGAACACAAATGGGGTGTGTTTTATTTTATCT
GATTTCGTTATTTCCTGGTTTGGTGAGGGGGATATGTATGTATGCATGTA
TGCCGCGAACATGTGCCGCCCAGAGGGTCGTTGACGCCTCTTTTCTACAA
AGCAGTAGAGTAGAAGGGCAAGGAATGGCGCTCCGGCCTCGAGAGAGGGA
GGGAGGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGATTGGTCACTGGTGG
CCGTACGTACGTATTGGAAGGATGGCTTGGGCCGCGCAACACACGCATGA
ATACTCCGCGACGGCCGCCGGGCCCCCCTTGCCCCCGACCTTCTCTCATT
CTCAATTAATCCCGCGCGTGTGACAGGAGGCCGAGAAGCACTCGGACAGC
TTTAACTCCAACCAAGACATGTTTGAGACTTTCATTAACCCCAAGTCCTT
CACGCAGGTGGGGGGGGGAGGGGGGGGCTGGCTGCTGCTGGTGTTGGTGT
TTTCAATACTGCTGTACCGTATGTTTTTTGGTCTTCTTTGTGGTTCGTGT
GTGCTTTGTGGTTTTTGTTGTGTGCTTTGTTCCGGTTCAGTCTTTTCTGT
CGTTTCGTCCGAACAGATCGCCTTTTTCTAATACATACTGGTTCTAGTAC
TGGAAGCGGGAAAAGTGAACTCTTTTTTTTCGAGAAGTAAATATGTGATG
GTAAAATACCTGGCCGCTTCTTCGTCTGGTTTGCTCCGCCTCGAGCGGGT
GCATCGTCAGCGACCATTGCTCAAAACAGGCAGATCCACGTCACCTCTTC
GCCCCTGCGTCAAGGGGTCACCAGGAGTGCGGGCTGGGTGCACAGCCCCC
CCCCCCCAACCCCCTTTGCTTGCCCCATTGCCCTATTTTTTAGCGATATT
GAAGTTTGCATTCATAGAAGAATATGTAGGAATTAGTATGATCGTACGCT
TGACACCACCCCCCACTGCACCAATGTATTCTAATAAGCATCACGCGTAC
AACCAAACTAAATAAATCCTAGGAGTATTTAGTGGACCCCTCCCCGAAAT
GGCCATTTCGAAATACGGTGGTGTGCATCCAGCCCTGCTCTCTCCCCTAA
TAACCCCTTCCTCCCTCCGTCCACGCTCCCCCCCCCCCCAGACCGTCGAG
AACATTTTCGACTTCTCTTTCTTCGTCAAGAGCGGAGAGGGACACATCTC
TATCGACGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1897:6124..9034+

>mRNA_L-elsbetiae_contig1897.5573.1 ID=mRNA_L-elsbetiae_contig1897.5573.1|Name=mRNA_L-elsbetiae_contig1897.5573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig1897:6124..9034+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCGTCCGGACGTGGACGGGGGCAAGGGCAAGAAGGTCAAGCAGAACAA
GGACCAGACGCAGACGCGCATCGCCAACATGAAGGTTCGTCCGGACGTGG
ACGGGGGCAAGGGCAAGAAGGTCAAGCAGAACAAGGACCAGACGCAGACG
CGCATCGCCAACATGAAGGAGGCCGAGAAGCACTCGGACAGCTTTAACTC
CAACCAAGACATGTTTGAGACTTTCATTAACCCCAAGTCCTTCACGCAGG
AGGCCGAGAAGCACTCGGACAGCTTTAACTCCAACCAAGACATGTTTGAG
ACTTTCATTAACCCCAAGTCCTTCACGCAGACCGTCGAGAACATTTTCGA
CTTCTCTTTCTTCGTCAAGAGCGGAGAGGGACACATCTCTATCGACGAGA
CCGTCGAGAACATTTTCGACTTCTCTTTCTTCGTCAAGAGCGGAGAGGGA
CACATCTCTATCGACGAG
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