mRNA_L-elsbetiae_contig1897.5572.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1897.5572.1
Unique NamemRNA_L-elsbetiae_contig1897.5572.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1897.5572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1897contigL-elsbetiae_contig1897:702..1186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size470
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1897.5572.1prot_L-elsbetiae_contig1897.5572.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1897 869..1138 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815788.1210086-UTR-L-elsbetiae_contig1897:701..8681622815788.1210086-UTR-L-elsbetiae_contig1897:701..868Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1897 702..868 -
1691683103.0239503-UTR-L-elsbetiae_contig1897:701..8681691683103.0239503-UTR-L-elsbetiae_contig1897:701..868Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1897 702..868 -
1622815788.1515784-UTR-L-elsbetiae_contig1897:1138..11861622815788.1515784-UTR-L-elsbetiae_contig1897:1138..1186Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1897 1139..1186 -
1691683103.0619407-UTR-L-elsbetiae_contig1897:1138..11861691683103.0619407-UTR-L-elsbetiae_contig1897:1138..1186Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1897 1139..1186 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815788.1328979-CDS-L-elsbetiae_contig1897:868..10111622815788.1328979-CDS-L-elsbetiae_contig1897:868..1011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1897 869..1011 -
1691683103.0380714-CDS-L-elsbetiae_contig1897:868..10111691683103.0380714-CDS-L-elsbetiae_contig1897:868..1011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1897 869..1011 -
1622815788.1422336-CDS-L-elsbetiae_contig1897:1026..11381622815788.1422336-CDS-L-elsbetiae_contig1897:1026..1138Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1897 1027..1138 -
1691683103.0484443-CDS-L-elsbetiae_contig1897:1026..11381691683103.0484443-CDS-L-elsbetiae_contig1897:1026..1138Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1897 1027..1138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1897.5572.1

>prot_L-elsbetiae_contig1897.5572.1 ID=prot_L-elsbetiae_contig1897.5572.1|Name=mRNA_L-elsbetiae_contig1897.5572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
MHETGKTSKRGRHKRLPTHTTIPWEKRCYWSKPYSIGLMTMCRVVISTES
QLHFGKDKTGHRANLPLSIFAFALFVSALPNTVV*
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mRNA from alignment at L-elsbetiae_contig1897:702..1186-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1897.5572.1 ID=mRNA_L-elsbetiae_contig1897.5572.1|Name=mRNA_L-elsbetiae_contig1897.5572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=485bp|location=Sequence derived from alignment at L-elsbetiae_contig1897:702..1186- (Laminarionema elsbetiae ELsaHSoW15)
CAAATGGCAAACGGCAAACGGCAAAAGTGCCGCTAGAGCCGATGGGAGAT
GCACGAGACGGGGAAAACCAGCAAGCGAGGACGGCACAAAAGGCTTCCAA
CACACACCACCATCCCTTGGGAGAAGCGGTGCTACTGGTCCAAGCCGTAT
TCCATAGGATGCCCTACAGCAGCAGTGATGACGATGTGCAGGGTTGTAAT
CTCAACTGAATCTCAACTGCACTTTGGAAAAGATAAAACTGGCCACAGGG
CAAATCTACCACTCTCGATTTTTGCGTTCGCACTCTTTGTGTCTGCCCTT
CCCAACACTGTCGTTTAGAGGTAACAGCAGCAGCCGCAAGCTCCATACAC
ATCCGATGCCCAATGCTGCAGGCTGTTTGAAGCTTTGGCGCTTCACATCT
TAAAAACAGATAATCAAAAATCATAAAAGAAGTCCCCCAGCACTTGTTGC
CAATCGACAGATTTTTTGGAAAATCAAAATTCACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1897:702..1186-

>mRNA_L-elsbetiae_contig1897.5572.1 ID=mRNA_L-elsbetiae_contig1897.5572.1|Name=mRNA_L-elsbetiae_contig1897.5572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig1897:702..1186- (Laminarionema elsbetiae ELsaHSoW15)
ATGCACGAGACGGGGAAAACCAGCAAGCGAGGACGGCACAAAAGGCTTCC
AACACACACCACCATCCCTTGGGAGAAGCGGTGCTACTGGTCCAAGCCGT
ATTCCATAGGATATGCACGAGACGGGGAAAACCAGCAAGCGAGGACGGCA
CAAAAGGCTTCCAACACACACCACCATCCCTTGGGAGAAGCGGTGCTACT
GGTCCAAGCCGTATTCCATAGGATTGATGACGATGTGCAGGGTTGTAATC
TCAACTGAATCTCAACTGCACTTTGGAAAAGATAAAACTGGCCACAGGGC
AAATCTACCACTCTCGATTTTTGCGTTCGCACTCTTTGTGTCTGCCCTTC
CCAACACTGTCGTTTAGTGATGACGATGTGCAGGGTTGTAATCTCAACTG
AATCTCAACTGCACTTTGGAAAAGATAAAACTGGCCACAGGGCAAATCTA
CCACTCTCGATTTTTGCGTTCGCACTCTTTGTGTCTGCCCTTCCCAACAC
TGTCGTTTAG
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