mRNA_L-elsbetiae_contig1891.5557.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1891.5557.1
Unique NamemRNA_L-elsbetiae_contig1891.5557.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1891.5557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1891contigL-elsbetiae_contig1891:18212..18812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size603
Cds size387
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815786.6366854-UTR-L-elsbetiae_contig1891:18211..184251622815786.6366854-UTR-L-elsbetiae_contig1891:18211..18425Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1891 18212..18425 +
1691683101.9483018-UTR-L-elsbetiae_contig1891:18211..184251691683101.9483018-UTR-L-elsbetiae_contig1891:18211..18425Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1891 18212..18425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815786.6481836-CDS-L-elsbetiae_contig1891:18425..188121622815786.6481836-CDS-L-elsbetiae_contig1891:18425..18812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1891 18426..18812 +
1691683101.9570806-CDS-L-elsbetiae_contig1891:18425..188121691683101.9570806-CDS-L-elsbetiae_contig1891:18425..18812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1891 18426..18812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1891.5557.1prot_L-elsbetiae_contig1891.5557.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1891 18426..18812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1891.5557.1

>prot_L-elsbetiae_contig1891.5557.1 ID=prot_L-elsbetiae_contig1891.5557.1|Name=mRNA_L-elsbetiae_contig1891.5557.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MLPGRKGDGRWGETQDPGGDFERIAAVLPETRAHYNTLLHLPTDSGSMHI
LLLKRNRGEVRQDGGERTAPKNVAPQIISGVEEEEEEEEHKTKRPLLAAC
GLLEAWVCGISYSTVSGYSIASADRDKPC
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mRNA from alignment at L-elsbetiae_contig1891:18212..18812+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1891.5557.1 ID=mRNA_L-elsbetiae_contig1891.5557.1|Name=mRNA_L-elsbetiae_contig1891.5557.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=601bp|location=Sequence derived from alignment at L-elsbetiae_contig1891:18212..18812+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGAGAGTAACGCACGGGTGGCGTTCATGCTGAAATTAATTCAGGCCTC
GGCGCCCGTGCTTGCGTCGTCATCTCAAGGACCGAGACTCTTTAGCAACT
AGAAGTACTTTTTTATCGTAAACCGCTCTGAGTTCTTCCCCGGGGAGGGG
GTCTTTTTTTGTTTTGTGAAAAAAGAAGCCCCCTCTCCCGGGGGGGAGGG
AACTCAGAGAAAGCATGCTCCCAGGCCGAAAAGGTGATGGGAGGTGGGGG
GAGACTCAAGACCCCGGGGGGGACTTCGAGCGGATTGCGGCAGTTTTGCC
CGAAACTCGTGCGCACTACAATACACTGTTGCACTTGCCCACCGACAGCG
GAAGCATGCACATTCTACTTTTAAAACGAAACAGGGGCGAGGTCAGGCAG
GATGGGGGAGAGCGCACCGCCCCCAAAAATGTTGCGCCGCAAATAATATC
AGGCGTGGAGGAGGAGGAGGAGGAGGAGGAACACAAGACTAAGCGACCGC
TGTTGGCCGCGTGTGGTCTTCTCGAGGCATGGGTGTGCGGCATTTCGTAC
AGCACGGTCTCGGGCTATTCCATCGCGAGCGCTGACCGAGACAAGCCATG
T
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1891:18212..18812+

>mRNA_L-elsbetiae_contig1891.5557.1 ID=mRNA_L-elsbetiae_contig1891.5557.1|Name=mRNA_L-elsbetiae_contig1891.5557.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig1891:18212..18812+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCCCAGGCCGAAAAGGTGATGGGAGGTGGGGGGAGACTCAAGACCC
CGGGGGGGACTTCGAGCGGATTGCGGCAGTTTTGCCCGAAACTCGTGCGC
ACTACAATACACTGTTGCACTTGCCCACCGACAGCGGAAGCATGCACATT
CTACTTTTAAAACGAAACAGGGGCGAGGTCAGGCAGGATGGGGGAGAGCG
CACCGCCCCCAAAAATGTTGCGCCGCAAATAATATCAGGCGTGGAGGAGG
AGGAGGAGGAGGAGGAACACAAGACTAAGCGACCGCTGTTGGCCGCGTGT
GGTCTTCTCGAGGCATGGGTGTGCGGCATTTCGTACAGCACGGTCTCGGG
CTATTCCATCGCGAGCGCTGACCGAGACAAGCCATGTATGCTCCCAGGCC
GAAAAGGTGATGGGAGGTGGGGGGAGACTCAAGACCCCGGGGGGGACTTC
GAGCGGATTGCGGCAGTTTTGCCCGAAACTCGTGCGCACTACAATACACT
GTTGCACTTGCCCACCGACAGCGGAAGCATGCACATTCTACTTTTAAAAC
GAAACAGGGGCGAGGTCAGGCAGGATGGGGGAGAGCGCACCGCCCCCAAA
AATGTTGCGCCGCAAATAATATCAGGCGTGGAGGAGGAGGAGGAGGAGGA
GGAACACAAGACTAAGCGACCGCTGTTGGCCGCGTGTGGTCTTCTCGAGG
CATGGGTGTGCGGCATTTCGTACAGCACGGTCTCGGGCTATTCCATCGCG
AGCGCTGACCGAGACAAGCCATGT
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