mRNA_L-elsbetiae_contig1891.5556.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1891.5556.1
Unique NamemRNA_L-elsbetiae_contig1891.5556.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1891.5556.1 vs. uniprot
Match: D7FLU9_ECTSI (C6 transcription factor Prf n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU9_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 2.070e-22
Identity = 47/81 (58.02%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:    7 DTCEVPACRSSARFALPAALAPTRCARHRTGGMVERARRRKACDLCTSRKIRCDGGQPTCGPCTGRGTNCRYSTRQRSGPK 249
            ++CE P C+  ARFA PA+L+PTRC+RH  GGM+ +A+ RKACD+CT+RK RCD  +PTCG C  +   CRYS R +SGPK
Sbjct:  159 ESCEAPECKDFARFAPPASLSPTRCSRHAAGGMIAKAKPRKACDVCTARKTRCDSVRPTCGTCAAQFATCRYSARLKSGPK 239
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BLAST of mRNA_L-elsbetiae_contig1891.5556.1 vs. uniprot
Match: A0A8H4BTE6_MUCCL (Nuclear protein n=1 Tax=Mucor circinelloides f. lusitanicus TaxID=29924 RepID=A0A8H4BTE6_MUCCL)

HSP 1 Score: 57.4 bits (137), Expect = 1.820e-7
Identity = 24/53 (45.28%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:  109 ERARRRKACDLCTSRKIRCDGGQPTCGPCTGRGTNCRYST-RQRSGPKRGFVD 264
            +R R  +AC+LC  +KI+CDGG+PTCG CT     C YS+  ++ GP++G+++
Sbjct:   13 KRKRLTQACELCRRKKIKCDGGKPTCGNCTRLNNACTYSSSNKKRGPRQGYIE 65
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BLAST of mRNA_L-elsbetiae_contig1891.5556.1 vs. uniprot
Match: A0A8H7RBH0_9FUNG (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7RBH0_9FUNG)

HSP 1 Score: 60.5 bits (145), Expect = 8.330e-7
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:  109 ERARRRKACDLCTSRKIRCDGGQPTCGPCTGRGTNCRYSTRQRS-GPKRGFVD 264
            +R R  +AC+LC  +KIRCDGG+PTC  CT  GT+C YS+  +  GP++G+++
Sbjct:    9 KRKRLTQACELCRRKKIRCDGGKPTCANCTRLGTDCVYSSSSKKRGPRQGYIE 61
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BLAST of mRNA_L-elsbetiae_contig1891.5556.1 vs. uniprot
Match: M2M1I1_BAUPA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Baudoinia panamericana (strain UAMH 10762) TaxID=717646 RepID=M2M1I1_BAUPA)

HSP 1 Score: 58.9 bits (141), Expect = 2.860e-6
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:  121 RRKACDLCTSRKIRCDGGQPTCGPCTGRGTNCRYS-TRQRSGPKRGFV 261
            +R AC LC  RK++CDGG+P+CG CT    +C Y   R++SGPKRG+V
Sbjct:   45 KRIACVLCRKRKLKCDGGKPSCGTCTRLAHDCSYDEVRRKSGPKRGYV 92
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BLAST of mRNA_L-elsbetiae_contig1891.5556.1 vs. uniprot
Match: A0A8H7RDX9_9FUNG (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7RDX9_9FUNG)

HSP 1 Score: 58.5 bits (140), Expect = 3.790e-6
Identity = 24/53 (45.28%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:  109 ERARRRKACDLCTSRKIRCDGGQPTCGPCTGRGTNCRYST-RQRSGPKRGFVD 264
            +R R  +AC+LC  +KI+CDGG+PTCG CT   + C YS+  ++ GP++G+++
Sbjct:   13 KRKRLTQACELCRRKKIKCDGGKPTCGNCTRLNSTCTYSSSNKKRGPRQGYIE 65
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BLAST of mRNA_L-elsbetiae_contig1891.5556.1 vs. uniprot
Match: A0A3N2PR93_9PEZI (Fungal-specific transcription factor domain-containing protein n=1 Tax=Sodiomyces alkalinus F11 TaxID=1314773 RepID=A0A3N2PR93_9PEZI)

HSP 1 Score: 58.5 bits (140), Expect = 3.850e-6
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:  121 RRKACDLCTSRKIRCDGGQPTCGPCTGRGTNCRYS-TRQRSGPKRGFV 261
            +R AC +C  RK++CDGG+P+CG C   G +C Y   R++SGPKRG+V
Sbjct:   42 KRLACIVCRKRKLKCDGGKPSCGTCARLGHSCAYDEVRRKSGPKRGYV 89
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BLAST of mRNA_L-elsbetiae_contig1891.5556.1 vs. uniprot
Match: A0A0C9LP89_9FUNG (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Mucor ambiguus TaxID=91626 RepID=A0A0C9LP89_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 6.850e-6
Identity = 24/53 (45.28%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:  109 ERARRRKACDLCTSRKIRCDGGQPTCGPCTGRGTNCRYST-RQRSGPKRGFVD 264
            +R R  +AC+LC  +KI+CDGG+PTCG CT   + C YS+  ++ GP++G+++
Sbjct:   13 KRKRLTQACELCRRKKIKCDGGKPTCGNCTRLNSACTYSSSNKKRGPRQGYIE 65
[Close]
BLAST of mRNA_L-elsbetiae_contig1891.5556.1 vs. uniprot
Match: A0A2S4L7L6_9HYPO (Transcriptional regulatory protein n=1 Tax=Tolypocladium paradoxum TaxID=94208 RepID=A0A2S4L7L6_9HYPO)

HSP 1 Score: 57.0 bits (136), Expect = 1.240e-5
Identity = 30/83 (36.14%), Postives = 43/83 (51.81%), Query Frame = 1 
Query:  121 RRKACDLCTSRKIRCDGGQPTCGPCTGRGTNCRYST-RQRSGPKRGFVD--------------------WNRPPTEIAPAPLP 306
            +R AC +C  RK++CDGG+P+C  C+  G +C Y   R++SGPKRG+V                      N  PT+  P P+P
Sbjct:   32 KRLACMICRKRKLKCDGGRPSCSTCSRLGHSCAYDEQRRKSGPKRGYVKALEERLKQVETLLKTQDPVPHNASPTKTVPMPMP 114
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BLAST of mRNA_L-elsbetiae_contig1891.5556.1 vs. uniprot
Match: A0A8H4FE29_COLGL (Transcriptional activator protein acu-15 n=1 Tax=Colletotrichum gloeosporioides TaxID=474922 RepID=A0A8H4FE29_COLGL)

HSP 1 Score: 52.0 bits (123), Expect = 1.800e-5
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:  115 ARRRKACDLCTSRKIRCDGGQPTCGPCTGRGTNCRYS-TRQRSGPKRGFV 261
            AR  +AC  C S+KI+CDG QP+C PCT R  +C+Y   ++R GP R +V
Sbjct:   16 ARIGQACLRCQSKKIKCDGKQPSCTPCTNRSHDCQYQQVQRRRGPGRRYV 65
[Close]
BLAST of mRNA_L-elsbetiae_contig1891.5556.1 vs. uniprot
Match: A0A0B7NHH3_9FUNG (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7NHH3_9FUNG)

HSP 1 Score: 56.2 bits (134), Expect = 2.200e-5
Identity = 23/53 (43.40%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  109 ERARRRKACDLCTSRKIRCDGGQPTCGPCTGRGTNCRYST-RQRSGPKRGFVD 264
            +R R  +AC+LC  +KI+CDGG+PTCG C      C YS+  ++ GP++G+++
Sbjct:   13 KRKRLTQACELCRRKKIKCDGGKPTCGNCVRLNNTCTYSSSNKKRGPRQGYIE 65
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1891.5556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FLU9_ECTSI2.070e-2258.02C6 transcription factor Prf n=1 Tax=Ectocarpus sil... [more]
A0A8H4BTE6_MUCCL1.820e-745.28Nuclear protein n=1 Tax=Mucor circinelloides f. lu... [more]
A0A8H7RBH0_9FUNG8.330e-749.06Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
M2M1I1_BAUPA2.860e-654.17Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A8H7RDX9_9FUNG3.790e-645.28Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A3N2PR93_9PEZI3.850e-652.08Fungal-specific transcription factor domain-contai... [more]
A0A0C9LP89_9FUNG6.850e-645.28Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A2S4L7L6_9HYPO1.240e-536.14Transcriptional regulatory protein n=1 Tax=Tolypoc... [more]
A0A8H4FE29_COLGL1.800e-550.00Transcriptional activator protein acu-15 n=1 Tax=C... [more]
A0A0B7NHH3_9FUNG2.200e-543.40Zn(2)-C6 fungal-type domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1891contigL-elsbetiae_contig1891:15951..17836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size775
Cds size771
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1891.5556.1prot_L-elsbetiae_contig1891.5556.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1891 15953..17836 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815786.5529613-CDS-L-elsbetiae_contig1891:15952..164741622815786.5529613-CDS-L-elsbetiae_contig1891:15952..16474Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1891 15953..16474 -
1691683101.9103162-CDS-L-elsbetiae_contig1891:15952..164741691683101.9103162-CDS-L-elsbetiae_contig1891:15952..16474Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1891 15953..16474 -
1622815786.5647967-CDS-L-elsbetiae_contig1891:17038..171761622815786.5647967-CDS-L-elsbetiae_contig1891:17038..17176Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1891 17039..17176 -
1691683101.9225628-CDS-L-elsbetiae_contig1891:17038..171761691683101.9225628-CDS-L-elsbetiae_contig1891:17038..17176Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1891 17039..17176 -
1622815786.5747218-CDS-L-elsbetiae_contig1891:17725..178361622815786.5747218-CDS-L-elsbetiae_contig1891:17725..17836Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1891 17726..17836 -
1691683101.9308262-CDS-L-elsbetiae_contig1891:17725..178361691683101.9308262-CDS-L-elsbetiae_contig1891:17725..17836Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1891 17726..17836 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1891.5556.1

>prot_L-elsbetiae_contig1891.5556.1 ID=prot_L-elsbetiae_contig1891.5556.1|Name=mRNA_L-elsbetiae_contig1891.5556.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=257bp
CPDTCEVPACRSSARFALPAALAPTRCARHRTGGMVERARRRKACDLCTS
RKIRCDGGQPTCGPCTGRGTNCRYSTRQRSGPKRGFVDWNRPPTEIAPAP
LPQSLFGGSAAASSRSVATATTAAAAAAAAAIAALVPPPPRPLLPAATVA
ASFSSSASPAAVAANAAAPGPAATTTPSVERAAGPAGPVAVAAAAAPSGD
PSGGGLDSSPRALAAHALTGFRHTAAASGAPNPGLQLAMLRMLPTYGSLL
GNLAASV
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mRNA from alignment at L-elsbetiae_contig1891:15951..17836-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1891.5556.1 ID=mRNA_L-elsbetiae_contig1891.5556.1|Name=mRNA_L-elsbetiae_contig1891.5556.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1886bp|location=Sequence derived from alignment at L-elsbetiae_contig1891:15951..17836- (Laminarionema elsbetiae ELsaHSoW15)
TGCCCGGACACCTGCGAGGTTCCTGCCTGCAGGAGCTCTGCGCGATTCGC
TCTCCCGGCGGCTCTTGCGCCGACGCGCTGCGCCCGGCACAGGACGGGCG
GCATGGTAGAGGTGAGAAGGTTTGGAGGTGATCTTTTTGGTCGCTCAACT
AACTTATGTTTCAGATGTGGCGACTCACTTGGGGGGCAGTCAGGCAGGCA
GGCAGGCAAGCGGGCAGGCAGGCGGGCAGGCAGGCTCGCTATTATATTGT
TTTTTGGAGGCATGCCAGACGGGGACAGGGGGTGGACCCGCTCGTGGCTT
GTAGCTAATTTCGGACAGACTTTCTGTGACACTACTTTTTGTGAACTTGG
TGTACATGCATATAGATAGATAGATAGAGACTAGGTTAGCCCTCAAGCGT
CGAGACGACACGTCGTTTTTGATACCACCGGATGTGTTCGCCGTGGTACA
ACCAAAAATCTGTACTGAATGTCTGGACGGGACCCCTTCTGAAGCCCACG
AGCGCGATTTAATCTCCGACGAGTGTGTTTCGAAAGCCCTCTAGTGTCCG
TGTTGTTTGTCTGTTCGTTTTGTTGCAGCGGCGCGCCCTCCTTCGTCCTA
ACCTCGGCTCGCCTTTGCTCCCGGCATCACCCTACGCGCCCAATCTCACT
CTTTGAGCAGAGGGCGAGGCGGCGGAAAGCTTGCGACTTGTGCACGTCGC
GGAAGATCAGGTGCGACGGGGGGCAGCCCACGTGCGGCCCCTGCACAGGG
CGCGGAACCAACTGCCGCTACAGCACTCGCCAGCGCTCCGGGCCAAAGGT
GAGAGGTGCAAGGGGAGCCCACTCCGTCGGCGCTGTTATTTTGGCTGCAG
CCGCGTTTGTCGGGGCGGGAAGAGTTTGAGGAGGAGTCGTGGTGTGGTCA
AGTCTGGTGTTGCGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGCGCGACA
TGCATACAGTGTTGTGAGGGGTTCAGAGGCGGGTGTGTGTTCCCGCCGGT
GTTATCAGGATGGTGCAGGTGTTCCCTTCGTGCTCGCTCGCACCTGGCGT
ACGCGCTGTTTCTTCGGTTGGGTGCCTCGCGATTGAGTGTTCCATGAGTC
GTTTTTATTTTTGGTGATGATGGTGGTGGTGATGATGATGATGATGGTGA
TGGTGATGATGATGATGATGATGATGATGGTGATGATGATGATGGTGATG
TACTTGTCGGCTTTTTTAACCAAGCCTCATCTCTTTCTGTGCTGCATATG
TACCACGCTGTCCCTGACGGCAAAATACCTCGCCTAACCCCCGCGCGCCC
GTTTCGATCACCCGAAAATGTCACGCCACTGCCTCTACTCTGGCGCTCGA
CCTCGTCTCCAGCGCGGCTTCGTGGACTGGAATCGGCCGCCGACCGAGAT
CGCCCCGGCCCCTCTCCCCCAATCGCTCTTCGGGGGGTCGGCCGCCGCGA
GCAGCCGTTCCGTGGCCACGGCCACGACGGCGGCGGCGGCGGCGGCGGCG
GCGGCCATCGCCGCTCTCGTGCCTCCTCCTCCTCGTCCTCTCCTTCCTGC
TGCGACGGTCGCCGCCTCCTTCTCCTCCTCCGCTTCGCCGGCCGCCGTCG
CGGCGAACGCCGCTGCACCGGGACCGGCGGCGACGACTACTCCCTCGGTT
GAGAGGGCCGCGGGACCGGCGGGACCGGTAGCGGTAGCGGCAGCGGCAGC
ACCCAGCGGGGATCCCAGTGGAGGTGGACTCGACAGCTCTCCCCGCGCCT
TGGCGGCTCACGCGCTGACAGGGTTCCGGCACACGGCGGCGGCCAGTGGC
GCCCCTAATCCCGGCTTGCAGCTGGCGATGCTCAGGATGTTGCCCACGTA
TGGCTCGCTGCTGGGGAACCTGGCTGCTTCGGTAGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1891:15951..17836-

>mRNA_L-elsbetiae_contig1891.5556.1 ID=mRNA_L-elsbetiae_contig1891.5556.1|Name=mRNA_L-elsbetiae_contig1891.5556.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1542bp|location=Sequence derived from alignment at L-elsbetiae_contig1891:15951..17836- (Laminarionema elsbetiae ELsaHSoW15)
TGCCCGGACACCTGCGAGGTTCCTGCCTGCAGGAGCTCTGCGCGATTCGC
TCTCCCGGCGGCTCTTGCGCCGACGCGCTGCGCCCGGCACAGGACGGGCG
GCATGGTAGAGTGCCCGGACACCTGCGAGGTTCCTGCCTGCAGGAGCTCT
GCGCGATTCGCTCTCCCGGCGGCTCTTGCGCCGACGCGCTGCGCCCGGCA
CAGGACGGGCGGCATGGTAGAGAGGGCGAGGCGGCGGAAAGCTTGCGACT
TGTGCACGTCGCGGAAGATCAGGTGCGACGGGGGGCAGCCCACGTGCGGC
CCCTGCACAGGGCGCGGAACCAACTGCCGCTACAGCACTCGCCAGCGCTC
CGGGCCAAAGAGGGCGAGGCGGCGGAAAGCTTGCGACTTGTGCACGTCGC
GGAAGATCAGGTGCGACGGGGGGCAGCCCACGTGCGGCCCCTGCACAGGG
CGCGGAACCAACTGCCGCTACAGCACTCGCCAGCGCTCCGGGCCAAAGCG
CGGCTTCGTGGACTGGAATCGGCCGCCGACCGAGATCGCCCCGGCCCCTC
TCCCCCAATCGCTCTTCGGGGGGTCGGCCGCCGCGAGCAGCCGTTCCGTG
GCCACGGCCACGACGGCGGCGGCGGCGGCGGCGGCGGCGGCCATCGCCGC
TCTCGTGCCTCCTCCTCCTCGTCCTCTCCTTCCTGCTGCGACGGTCGCCG
CCTCCTTCTCCTCCTCCGCTTCGCCGGCCGCCGTCGCGGCGAACGCCGCT
GCACCGGGACCGGCGGCGACGACTACTCCCTCGGTTGAGAGGGCCGCGGG
ACCGGCGGGACCGGTAGCGGTAGCGGCAGCGGCAGCACCCAGCGGGGATC
CCAGTGGAGGTGGACTCGACAGCTCTCCCCGCGCCTTGGCGGCTCACGCG
CTGACAGGGTTCCGGCACACGGCGGCGGCCAGTGGCGCCCCTAATCCCGG
CTTGCAGCTGGCGATGCTCAGGATGTTGCCCACGTATGGCTCGCTGCTGG
GGAACCTGGCTGCTTCGGTACGCGGCTTCGTGGACTGGAATCGGCCGCCG
ACCGAGATCGCCCCGGCCCCTCTCCCCCAATCGCTCTTCGGGGGGTCGGC
CGCCGCGAGCAGCCGTTCCGTGGCCACGGCCACGACGGCGGCGGCGGCGG
CGGCGGCGGCGGCCATCGCCGCTCTCGTGCCTCCTCCTCCTCGTCCTCTC
CTTCCTGCTGCGACGGTCGCCGCCTCCTTCTCCTCCTCCGCTTCGCCGGC
CGCCGTCGCGGCGAACGCCGCTGCACCGGGACCGGCGGCGACGACTACTC
CCTCGGTTGAGAGGGCCGCGGGACCGGCGGGACCGGTAGCGGTAGCGGCA
GCGGCAGCACCCAGCGGGGATCCCAGTGGAGGTGGACTCGACAGCTCTCC
CCGCGCCTTGGCGGCTCACGCGCTGACAGGGTTCCGGCACACGGCGGCGG
CCAGTGGCGCCCCTAATCCCGGCTTGCAGCTGGCGATGCTCAGGATGTTG
CCCACGTATGGCTCGCTGCTGGGGAACCTGGCTGCTTCGGTA
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