mRNA_L-elsbetiae_contig18893.5549.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18893.5549.1
Unique NamemRNA_L-elsbetiae_contig18893.5549.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18893.5549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18893contigL-elsbetiae_contig18893:376..899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size524
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.8509173-CDS-L-elsbetiae_contig18893:375..7201622815785.8509173-CDS-L-elsbetiae_contig18893:375..720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18893 376..720 +
1691683101.3921258-CDS-L-elsbetiae_contig18893:375..7201691683101.3921258-CDS-L-elsbetiae_contig18893:375..720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18893 376..720 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.8605196-UTR-L-elsbetiae_contig18893:720..8991622815785.8605196-UTR-L-elsbetiae_contig18893:720..899Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18893 721..899 +
1691683101.4025142-UTR-L-elsbetiae_contig18893:720..8991691683101.4025142-UTR-L-elsbetiae_contig18893:720..899Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18893 721..899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18893.5549.1prot_L-elsbetiae_contig18893.5549.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18893 376..720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18893.5549.1

>prot_L-elsbetiae_contig18893.5549.1 ID=prot_L-elsbetiae_contig18893.5549.1|Name=mRNA_L-elsbetiae_contig18893.5549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
LCVSVCVRVSVCACVVGVGVCVFSLLLRVGWSFPSQRTWTTAFSAVLAFY
GYGFVCTDRSCPAGFAPVVLSCVDVFLRLTDGGVPVFYLESEAAAAAAAA
AAGACFFLESRAYR*
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mRNA from alignment at L-elsbetiae_contig18893:376..899+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18893.5549.1 ID=mRNA_L-elsbetiae_contig18893.5549.1|Name=mRNA_L-elsbetiae_contig18893.5549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=524bp|location=Sequence derived from alignment at L-elsbetiae_contig18893:376..899+ (Laminarionema elsbetiae ELsaHSoW15)
TTGTGCGTCTCTGTTTGTGTGCGTGTGTCTGTGTGTGCGTGCGTAGTAGG
CGTAGGCGTTTGTGTGTTTTCGCTTCTTTTGAGGGTCGGGTGGAGCTTCC
CATCACAGAGGACATGGACTACGGCGTTTTCGGCTGTGCTGGCTTTTTAC
GGTTACGGTTTTGTGTGTACCGACAGGAGTTGTCCCGCCGGCTTTGCCCC
GGTTGTGCTCTCTTGCGTCGATGTTTTTCTTCGGCTTACTGACGGCGGCG
TACCTGTGTTTTACCTTGAGAGCGAGGCGGCGGCGGCGGCGGCGGCGGCG
GCGGCGGGCGCGTGTTTTTTTCTTGAATCCAGAGCCTATCGTTGATGATT
TATCGATGAGGTTTGGAGGCTTGTTGTTTGGGGGTATGTAACGAGGACAA
GACTCCCTGATTTTCCTTTTTTTTTTGTCAAGATCCTCGACGGGCCGGCG
CGGTGTTTGATTAACCCTTTGGTGCGTGGTTATATTAGTTTTTGAGACTG
ATCGCTTGCGTACTAGCCCACCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18893:376..899+

>mRNA_L-elsbetiae_contig18893.5549.1 ID=mRNA_L-elsbetiae_contig18893.5549.1|Name=mRNA_L-elsbetiae_contig18893.5549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig18893:376..899+ (Laminarionema elsbetiae ELsaHSoW15)
TTGTGCGTCTCTGTTTGTGTGCGTGTGTCTGTGTGTGCGTGCGTAGTAGG
CGTAGGCGTTTGTGTGTTTTCGCTTCTTTTGAGGGTCGGGTGGAGCTTCC
CATCACAGAGGACATGGACTACGGCGTTTTCGGCTGTGCTGGCTTTTTAC
GGTTACGGTTTTGTGTGTACCGACAGGAGTTGTCCCGCCGGCTTTGCCCC
GGTTGTGCTCTCTTGCGTCGATGTTTTTCTTCGGCTTACTGACGGCGGCG
TACCTGTGTTTTACCTTGAGAGCGAGGCGGCGGCGGCGGCGGCGGCGGCG
GCGGCGGGCGCGTGTTTTTTTCTTGAATCCAGAGCCTATCGTTGATTGTG
CGTCTCTGTTTGTGTGCGTGTGTCTGTGTGTGCGTGCGTAGTAGGCGTAG
GCGTTTGTGTGTTTTCGCTTCTTTTGAGGGTCGGGTGGAGCTTCCCATCA
CAGAGGACATGGACTACGGCGTTTTCGGCTGTGCTGGCTTTTTACGGTTA
CGGTTTTGTGTGTACCGACAGGAGTTGTCCCGCCGGCTTTGCCCCGGTTG
TGCTCTCTTGCGTCGATGTTTTTCTTCGGCTTACTGACGGCGGCGTACCT
GTGTTTTACCTTGAGAGCGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGGCGCGTGTTTTTTTCTTGAATCCAGAGCCTATCGTTGA
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