mRNA_L-elsbetiae_contig18890.5547.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18890.5547.1
Unique NamemRNA_L-elsbetiae_contig18890.5547.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18890.5547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18890contigL-elsbetiae_contig18890:870..1385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18890.5547.1prot_L-elsbetiae_contig18890.5547.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18890 967..1320 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.6767905-UTR-L-elsbetiae_contig18890:869..9661622815785.6767905-UTR-L-elsbetiae_contig18890:869..966Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18890 870..966 +
1691683101.3016386-UTR-L-elsbetiae_contig18890:869..9661691683101.3016386-UTR-L-elsbetiae_contig18890:869..966Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18890 870..966 +
1622815785.700552-UTR-L-elsbetiae_contig18890:1320..13851622815785.700552-UTR-L-elsbetiae_contig18890:1320..1385Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18890 1321..1385 +
1691683101.3206615-UTR-L-elsbetiae_contig18890:1320..13851691683101.3206615-UTR-L-elsbetiae_contig18890:1320..1385Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18890 1321..1385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.6904352-CDS-L-elsbetiae_contig18890:966..13201622815785.6904352-CDS-L-elsbetiae_contig18890:966..1320Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18890 967..1320 +
1691683101.3110063-CDS-L-elsbetiae_contig18890:966..13201691683101.3110063-CDS-L-elsbetiae_contig18890:966..1320Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18890 967..1320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18890.5547.1

>prot_L-elsbetiae_contig18890.5547.1 ID=prot_L-elsbetiae_contig18890.5547.1|Name=mRNA_L-elsbetiae_contig18890.5547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MFHQSVLYNDTDNNAEKRVVPMYKILRLYILQRWSAKIIPVTMAQTVNVS
FWWHNSSLRLSRLVYGYQPVRFSVVHRLCIVAKKLPPFYHNPGVVLALTD
DTQVAFVHPRMCIPSPQ*
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mRNA from alignment at L-elsbetiae_contig18890:870..1385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18890.5547.1 ID=mRNA_L-elsbetiae_contig18890.5547.1|Name=mRNA_L-elsbetiae_contig18890.5547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig18890:870..1385+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCGAACTGCCATTGTTAAACAGTGGGGGTTAATCGGTTCAAAGTTGAA
GCACCATCGACAGCGGCATGGAGATGCAGTGATGTTCATGTGTGTTGATG
TTTCATCAAAGTGTTTTGTACAACGATACGGACAACAATGCCGAAAAACG
TGTGGTCCCCATGTACAAAATCCTGCGCTTATATATATTGCAGCGGTGGA
GCGCGAAGATCATCCCAGTCACAATGGCACAGACAGTTAATGTCTCTTTT
TGGTGGCATAATTCTAGTCTGAGGTTGTCTAGACTAGTCTATGGGTACCA
ACCTGTGAGGTTTTCGGTAGTACATAGACTATGTATTGTAGCCAAAAAAT
TACCACCTTTCTACCATAATCCTGGCGTAGTACTGGCCCTCACGGATGAT
ACCCAAGTTGCGTTTGTTCATCCACGCATGTGCATACCTTCGCCGCAGTG
ATCCGAAACGTTCGTGCTGCGATATCTGTCTCGGTCGTTAGGACCACATG
TCTACCTCCATCGTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18890:870..1385+

>mRNA_L-elsbetiae_contig18890.5547.1 ID=mRNA_L-elsbetiae_contig18890.5547.1|Name=mRNA_L-elsbetiae_contig18890.5547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig18890:870..1385+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCATCAAAGTGTTTTGTACAACGATACGGACAACAATGCCGAAAA
ACGTGTGGTCCCCATGTACAAAATCCTGCGCTTATATATATTGCAGCGGT
GGAGCGCGAAGATCATCCCAGTCACAATGGCACAGACAGTTAATGTCTCT
TTTTGGTGGCATAATTCTAGTCTGAGGTTGTCTAGACTAGTCTATGGGTA
CCAACCTGTGAGGTTTTCGGTAGTACATAGACTATGTATTGTAGCCAAAA
AATTACCACCTTTCTACCATAATCCTGGCGTAGTACTGGCCCTCACGGAT
GATACCCAAGTTGCGTTTGTTCATCCACGCATGTGCATACCTTCGCCGCA
GTGAATGTTTCATCAAAGTGTTTTGTACAACGATACGGACAACAATGCCG
AAAAACGTGTGGTCCCCATGTACAAAATCCTGCGCTTATATATATTGCAG
CGGTGGAGCGCGAAGATCATCCCAGTCACAATGGCACAGACAGTTAATGT
CTCTTTTTGGTGGCATAATTCTAGTCTGAGGTTGTCTAGACTAGTCTATG
GGTACCAACCTGTGAGGTTTTCGGTAGTACATAGACTATGTATTGTAGCC
AAAAAATTACCACCTTTCTACCATAATCCTGGCGTAGTACTGGCCCTCAC
GGATGATACCCAAGTTGCGTTTGTTCATCCACGCATGTGCATACCTTCGC
CGCAGTGA
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