mRNA_L-elsbetiae_contig1889.5545.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1889.5545.1 vs. uniprot
Match: D8LEE2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE2_ECTSI) HSP 1 Score: 912 bits (2356), Expect = 1.110e-298 Identity = 752/1586 (47.41%), Postives = 835/1586 (52.65%), Query Frame = 1 Query: 1 KAGDVDAALDLMSGMEACEGFSGASEYNQIIAACGRGGDWQRAVSTLGRIRRTGAAPDAHSFAMAXXXXXXXXXXXXXXXXXXXXXXXGGGVRPNTVVYNTLLGLCKGRPLRGGRGRGGAREGASAAAVAR-----TGENLNGYGGGRGVRRVNXXXXXXDGVAGGLPESRAVRISGNTVGTGGVRAGVGGASGWGDKPEELVATAVTLLHEMTVGGGECAPDKMSFELVMQACVNAGRPESALKVFRAMTRWATEGVSSTGEAFDAGAAXXXXXXXXXXXXXXXXXAVGVRPDRATYRLGLTAAAEAGDGAAAAVLLEEMLGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALHLLREARPVLRQAFLSPPXXXXXXXXXXXXXPRASEEGGRKRTGSVVAAYTLAMAACRRADRHADGLQVLSMLEEDGGRGNEEFFRVALKCXXXXXXXXXXXXXXXXXXXXXXXAAVADRVLEDMSAQGIRCRVEGFTDVAQAYGVAGRWEDALALLSRAAVVPEENGEEPAGDAVVPDERMYCSVINXXXXXXXXXXXVELVQSMRRSPSTSSPSPQLLAGXXXXXXXXXXXXXXXXXXXXXXXXXPGRAAYACACRACARQGEWGAVLALMEDMRDDGVPRDAXXXXXXXXXXXXXXXXERAVSIVTTEMELDGVAPDIISYNQALKACRAGADGGGQAAQRALELTAEVRSKRLGLDVVTLEAAARSCLADGRPEFGFDLVSEALESWRQGSLGGGXXXXXXXXGVSRRPEERIDAGDAGDARRGWAPEEVQRLETMRILLLGRMGRWEESLQVLDAMKARFGER-VDGRAFVSAAHACAAAGEWALVQVLQTEASXXXXXXXXXXXXXXXXXAGVPPGAAWNMQRALLSGLATAGVWERAVAVLRDMHGYRGGVGAGGEGERGAVVVGEDRVLRSGRVRDGRGGVRGMGMGMADPSLHWQRRMLKDYRTVMHACLRAGAWDEALSVWSELRARPDRPRPCARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------VSAAAVADDRASDEDTALSGRG-WGDGGEGRVGGDEEGAXXXXXXXXXXXGGGDTALRVVLSEMAAGGA---RLGWEAYAAVCWARSQQKHWHRASLGVLELIGECGLEEDASAPAIDQQQQQQRAEGMRSLYGRLLTAAGKIPGCV---GEEPRKGAAAHAVRQILADAEERLAALPGGPGPHVIAAAAVGFARAGDWESARDVALRFSPSSRDEEXXXXXXXXXXXXXXXXXXXXXXXXLLSSSSSAFRRGAADAXXXXXXXXXXXXXXXARAGELEEAEALAE----------------------------------------------ELGFGQEAGLALATAYERAGRPYDAEALRSRLQGRAAISLGLDEADGVEGRSKEQPERVDVPAGLLPNVGGPSGLMASALD-DGRTGLDDGLGGGADHQYDLFLQWMATGEEDEXXXXXXXXXXXXXXXXXGAWSGDELWGPAAEDGGMVGSRAGAPVERGSEEGLTIRELEGW 4557 KAGDV AALDLM GME CEGF GA E XXXXXXXXXXXXXXXXXXXXXXX GVRPNTVVYNTLL LC+G+PLRG RG TG NLNGYGG G+ VN GVA G+P+ RA+R GV GG G ++P+ELV TAV LLHEMTVGG ECAPDKMSFELVMQACVNAGRPESALKVFRAM R A A XXXXXXXXXXXXX AV VRPDRAT+RLGLTAAAEAGDG AAAVLLEEM AG AL LL+ RPVL+Q S P A E R+ G+VVAAYTLAM ACRR+ RH++GL+VL MLEEDGG G+E FFRVALKC AAVADRVLE MSAQGIRC VEGFTD+AQAYG+AGRWEDALALL RAA + A VPDERMYCSVIN VEL+QSMRR S XXXXXXXXXXXXXXXXXXX PGRAAY CACRACAR+GEWGAVL L+EDMR+DG+ RD+ ERAV IVT EME DGV+PD +S+ QAL+ACRAGADG G+AAQ AL L EVRS+ L VV LE+AAR+CLAD RPE D+VSE L+SWR+GSLGG GD G RR W +EVQRLETMRI +LGR+GRWE+SL+ LDAM+A+FG+ +D RAFVSAA ACAAAGEW+L+QVLQ+EAS GV PG+AW+MQRALLSGL TAG+W RA+ +LR+MH GG G+ GE+R G GM DPS HWQRRM KD+R+VMHACLRAGAWD+ALSVWS+LR+ + P PC RT VSAA VADD +S E+ LSGRG WG GG V G G+ ALR VLS+MAAGG +GWE YAAVCWARSQ+K WHRASLGVLEL+GE G + A ++ AEGMRSLY RLL AA KIP V+AAAA FARAGDWE ARD+A+RF P + SA RR ADA ARAGEL EAEALAE LGF AG+ALA AYERAGR DAE LRSRLQGR A SLGL+EA GVEG P VP LP+VGG S + D T YDLFLQWMATG XXXXXXXXXXXXXXXXX P EEGLTIRELEGW Sbjct: 463 KAGDVGAALDLMDGMENCEGFRGAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRPNTVVYNTLLALCRGKPLRGVRGGXXXXXXXXXXXXXXXXXDGTGPNLNGYGGXGGLEEVNGH-----GVAVGMPDGRAIRN--------GVSVPGGGTVGSRERPDELVGTAVALLHEMTVGGSECAPDKMSFELVMQACVNAGRPESALKVFRAMARVA---------AGXXXXXXXXXXXXXXXXXXGRGRAVEVRPDRATFRLGLTAAAEAGDGPAAAVLLEEMRDAGIAMDESAFHLAATAFGRAGLWRQGVRVAVVAAEQGIALAPTTLTSILGACAKQARWREALGLLQGTRPVLQQGLSSLPLSTGAGVV-------AGNE--RRGEGNVVAAYTLAMVACRRSGRHSEGLRVLEMLEEDGGVGDEAFFRVALKCCAKAGGVGERGDCSG--------AAVADRVLEGMSAQGIRCGVEGFTDIAQAYGLAGRWEDALALLPRAAAL-----------AAVPDERMYCSVINAMGESGAWEAAVELIQSMRRR-RPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLEPPPPGRAAYGCACRACARKGEWGAVLGLIEDMREDGLERDSSVYASAMRAFVEAGDWERAVEIVTVEMERDGVSPDALSFGQALRACRAGADGSGRAAQLALALVGEVRSRGLEPGVVILESAARACLADDRPELALDIVSETLDSWRRGSLGGD--------------------GDGGGGRR-WGIDEVQRLETMRITVLGRLGRWEDSLEALDAMRAKFGDDDLDERAFVSAARACAAAGEWSLIQVLQSEASAVGDGD------------GVSPGSAWDMQRALLSGLTTAGMWRRAMGMLREMH-------HGGGGDTVMPAAGEER-----------------GQGMPDPSPHWQRRMFKDHRSVMHACLRAGAWDKALSVWSDLRSIVEGPIPCGRTYTAALRACGPLGLWATARDLLSEMRDGAEGAEGDGLLLLPEARHYAFAVSAATVADDISSYEEATLSGRGGWGAGGSDAV-------------VDGDGGSGNAALRSVLSDMAAGGGGGVEIGWETYAAVCWARSQRKQWHRASLGVLELMGEHGFGDGALGT-------EEAAEGMRSLYRRLLAAASKIPRFATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLAAAATAFARAGDWEGARDIAVRFDPRVGGPTAGGASSG-------------------TGEPSAVRRRTADAAAVVSVAVAAT----ARAGELVEAEALAELARVIATTAEVSASSSGXXXXXXXSRSRGSDGEEARVSRGTERSNNPLGFDHRAGVALADAYERAGRLSDAEGLRSRLQGRMASSLGLEEAAGVEGGVAAAPAASAVPR--LPSVGGHSRRRRPLAEGDESTWPXXXXXXXXXXXYDLFLQWMATGXXXXXXXXXXXXXXXXXXXXXXXXX-------------XXXXXVAGPPRESDEEGLTIRELEGW 1882 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1889.5545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1889.5545.1 >prot_L-elsbetiae_contig1889.5545.1 ID=prot_L-elsbetiae_contig1889.5545.1|Name=mRNA_L-elsbetiae_contig1889.5545.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1520bp KAGDVDAALDLMSGMEACEGFSGASEYNQIIAACGRGGDWQRAVSTLGRIback to top mRNA from alignment at L-elsbetiae_contig1889:13803..22398- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1889.5545.1 ID=mRNA_L-elsbetiae_contig1889.5545.1|Name=mRNA_L-elsbetiae_contig1889.5545.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8596bp|location=Sequence derived from alignment at L-elsbetiae_contig1889:13803..22398- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1889:13803..22398- >mRNA_L-elsbetiae_contig1889.5545.1 ID=mRNA_L-elsbetiae_contig1889.5545.1|Name=mRNA_L-elsbetiae_contig1889.5545.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=9120bp|location=Sequence derived from alignment at L-elsbetiae_contig1889:13803..22398- (Laminarionema elsbetiae ELsaHSoW15)back to top |