mRNA_L-elsbetiae_contig18861.5539.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18861.5539.1
Unique NamemRNA_L-elsbetiae_contig18861.5539.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig18861.5539.1 vs. uniprot
Match: D8LD05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD05_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.190e-20
Identity = 49/73 (67.12%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    7 QVLGPGFGSFYGTFVPMAKEIISCAAAAPAGVPPGSPLSEDTDTDLLRGKAMEAIALMGQAVGLEVFREDAHQ 225
            QVLGP FGSFYGTFVP+AKEII  A A P G    +  +   D D +RGKA+EAIALMGQAVGL++FREDAHQ
Sbjct:  186 QVLGPEFGSFYGTFVPLAKEIIF-AGATPTGPAAAAAATPSEDMDAVRGKAVEAIALMGQAVGLDLFREDAHQ 257          
BLAST of mRNA_L-elsbetiae_contig18861.5539.1 vs. uniprot
Match: D7FNE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE2_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 5.880e-10
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1
Query:  133 DTDLLRGKAMEAIALMGQAVGLEVFREDAHQ 225
            DTDLLRGKAMEAIALMGQAVGLEVFREDAHQ
Sbjct:  525 DTDLLRGKAMEAIALMGQAVGLEVFREDAHQ 555          
BLAST of mRNA_L-elsbetiae_contig18861.5539.1 vs. uniprot
Match: A0A7S3PRL9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PRL9_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.700e-8
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 1
Query:    1 LSQVLGPGFGSFYGTFVPMAKEIISCAAAAPAGVPPGSPLSEDTDTDLLRGKAMEAIALMGQAVGLEVFREDAHQ 225
            L+QV+G  FG +Y  F+P+AK +++       G         +  T+ LRGKAM+ + LMGQAV  E F  DA Q
Sbjct:   31 LAQVIGASFGMYYDHFMPLAKSLVAAKDLPNTG---------EEGTETLRGKAMDCVGLMGQAVAKEKFEPDAKQ 96          
BLAST of mRNA_L-elsbetiae_contig18861.5539.1 vs. uniprot
Match: A0A5D6XWI5_9STRA (Importin N-terminal domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWI5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.050e-7
Identity = 32/78 (41.03%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 LSQVLGPGFGSFYGTFVPMAKEIISCAAAAPAGVPPGSPLSEDTDTDLLRGKAMEAIALMGQAVGLEVFREDAHQASE 234
            +++V+G  F  FY  F+P+AK+++  A+ A              +  LLRGKAME+IAL+GQAVG E F  DA +  E
Sbjct:  519 VAKVIGADFARFYDIFIPLAKDVLVHASGA--------------EFALLRGKAMESIALIGQAVGKERFAGDAKEVME 582          
BLAST of mRNA_L-elsbetiae_contig18861.5539.1 vs. uniprot
Match: A0A8K1FGX3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGX3_PYTOL)

HSP 1 Score: 55.1 bits (131), Expect = 5.700e-7
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 LSQVLGPGFGSFYGTFVPMAKEIISCAAAAPAGVPPGSPLSEDTDTDLLRGKAMEAIALMGQAVGLEVFREDAHQASE 234
            +++V+G  F  +Y  F+P+AK+++  A+ A  G              LLRGKAME+IAL+GQAVG E F  DA Q  E
Sbjct:  518 VAKVIGEEFDRYYEIFMPLAKDVLVNASGAEYG--------------LLRGKAMESIALIGQAVGKERFVADAKQVME 581          
BLAST of mRNA_L-elsbetiae_contig18861.5539.1 vs. uniprot
Match: A0A2D4CEF5_PYTIN (Importin-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CEF5_PYTIN)

HSP 1 Score: 53.9 bits (128), Expect = 1.430e-6
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 1
Query:    1 LSQVLGPGFGSFYGTFVPMAKEIISCAAAAPAGVPPGSPLSEDTDTDLLRGKAMEAIALMGQAVGLEVFREDAHQASE 234
            +++V+G  F  FY  F+P+A +++  A  A              +  LLRGKAME+IAL+GQAVG E F EDA    E
Sbjct:  518 VAKVIGADFERFYSIFMPLAMDVLKNAQGA--------------EYALLRGKAMESIALIGQAVGKERFAEDAKAVME 581          
BLAST of mRNA_L-elsbetiae_contig18861.5539.1 vs. uniprot
Match: F0W5X9_9STRA (Importinlike protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W5X9_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.460e-6
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 1
Query:    1 LSQVLGPGFGSFYGTFVPMAKEIISCAAAAPAGVPPGSPLSEDTDTDLLRGKAMEAIALMGQAVGLEVFREDAHQASE 234
            +++V+G GF ++Y  F+P+AK ++  A+        GS  S      LLRGK+ME IAL+GQAVG + F  DA +  E
Sbjct:  518 VAKVIGSGFDAYYDIFIPVAKNVLIHAS--------GSEFS------LLRGKSMETIALIGQAVGKDRFLNDAKEVME 581          
BLAST of mRNA_L-elsbetiae_contig18861.5539.1 vs. uniprot
Match: A0A024G4G4_9STRA (Importin N-terminal domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4G4_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.990e-6
Identity = 32/78 (41.03%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 LSQVLGPGFGSFYGTFVPMAKEIISCAAAAPAGVPPGSPLSEDTDTDLLRGKAMEAIALMGQAVGLEVFREDAHQASE 234
            +++V+G GF ++Y  F+P+AK ++  A         GS  S      LLRGK+ME IAL+GQAVG + F  DA +  E
Sbjct:  518 VAKVIGAGFDAYYDIFIPVAKNVLVHAI--------GSEFS------LLRGKSMETIALIGQAVGKDRFLNDAREVME 581          
BLAST of mRNA_L-elsbetiae_contig18861.5539.1 vs. uniprot
Match: A0A6G0X6P6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X6P6_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.720e-6
Identity = 29/73 (39.73%), Postives = 43/73 (58.90%), Query Frame = 1
Query:    1 LSQVLGPGFGSFYGTFVPMAKEIISCAAAAPAGVPPGSPLSEDTDTDLLRGKAMEAIALMGQAVGLEVFREDA 219
            +++V+G  F  +Y  F+P+AK++++ A   P                LLRGKAME +AL+GQAVG + F EDA
Sbjct:  513 VAKVVGDAFVLYYNVFMPVAKQVLTQAHGKPYA--------------LLRGKAMECVALIGQAVGKQAFLEDA 571          
BLAST of mRNA_L-elsbetiae_contig18861.5539.1 vs. uniprot
Match: H3GNL8_PHYRM (Uncharacterized protein n=21 Tax=Peronosporaceae TaxID=4777 RepID=H3GNL8_PHYRM)

HSP 1 Score: 52.8 bits (125), Expect = 3.720e-6
Identity = 31/78 (39.74%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    1 LSQVLGPGFGSFYGTFVPMAKEIISCAAAAPAGVPPGSPLSEDTDTDLLRGKAMEAIALMGQAVGLEVFREDAHQASE 234
            +++V+G  F  FY  F+P+AKE+++ A                 +  LLRGK+ME+IAL+GQAVG E F  DA +  E
Sbjct:  518 VAKVIGDEFLRFYDIFIPLAKEVLTNA--------------HGKEYSLLRGKSMESIALIGQAVGKERFVNDAKEIME 581          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18861.5539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LD05_ECTSI2.190e-2067.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FNE2_ECTSI5.880e-10100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3PRL9_9STRA1.700e-840.00Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A5D6XWI5_9STRA3.050e-741.03Importin N-terminal domain-containing protein n=1 ... [more]
A0A8K1FGX3_PYTOL5.700e-742.31Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CEF5_PYTIN1.430e-641.03Importin-like protein n=1 Tax=Pythium insidiosum T... [more]
F0W5X9_9STRA1.460e-641.03Importinlike protein putative n=1 Tax=Albugo laiba... [more]
A0A024G4G4_9STRA1.990e-641.03Importin N-terminal domain-containing protein n=1 ... [more]
A0A6G0X6P6_9STRA2.720e-639.73Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
H3GNL8_PHYRM3.720e-639.74Uncharacterized protein n=21 Tax=Peronosporaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18861contigL-elsbetiae_contig18861:1648..1881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue2e-17
Seed eggNOG ortholog2880.D8LD05
KEGG koko:K20195,ko:K20221,ko:K20222
KEGG TC1.I.1
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGsKOG2171@1,KOG2171@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko04131
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.0186667-CDS-L-elsbetiae_contig18861:1647..18811622815785.0186667-CDS-L-elsbetiae_contig18861:1647..1881Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18861 1648..1881 +
1691683100.8676279-CDS-L-elsbetiae_contig18861:1647..18811691683100.8676279-CDS-L-elsbetiae_contig18861:1647..1881Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18861 1648..1881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18861.5539.1prot_L-elsbetiae_contig18861.5539.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18861 1648..1881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18861.5539.1

>prot_L-elsbetiae_contig18861.5539.1 ID=prot_L-elsbetiae_contig18861.5539.1|Name=mRNA_L-elsbetiae_contig18861.5539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
LSQVLGPGFGSFYGTFVPMAKEIISCAAAAPAGVPPGSPLSEDTDTDLLR
GKAMEAIALMGQAVGLEVFREDAHQASE
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mRNA from alignment at L-elsbetiae_contig18861:1648..1881+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18861.5539.1 ID=mRNA_L-elsbetiae_contig18861.5539.1|Name=mRNA_L-elsbetiae_contig18861.5539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=234bp|location=Sequence derived from alignment at L-elsbetiae_contig18861:1648..1881+ (Laminarionema elsbetiae ELsaHSoW15)
CTGTCCCAGGTGTTGGGCCCCGGATTCGGCTCCTTCTACGGCACCTTCGT GCCTATGGCCAAGGAAATTATCAGCTGCGCGGCCGCCGCACCGGCGGGCG TGCCCCCGGGGTCGCCGCTCTCGGAGGACACGGACACGGATCTGCTGCGC GGCAAGGCGATGGAGGCGATAGCGCTCATGGGACAGGCGGTCGGACTGGA AGTGTTCCGCGAAGACGCGCACCAGGCGAGCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18861:1648..1881+

>mRNA_L-elsbetiae_contig18861.5539.1 ID=mRNA_L-elsbetiae_contig18861.5539.1|Name=mRNA_L-elsbetiae_contig18861.5539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig18861:1648..1881+ (Laminarionema elsbetiae ELsaHSoW15)
CTGTCCCAGGTGTTGGGCCCCGGATTCGGCTCCTTCTACGGCACCTTCGT
GCCTATGGCCAAGGAAATTATCAGCTGCGCGGCCGCCGCACCGGCGGGCG
TGCCCCCGGGGTCGCCGCTCTCGGAGGACACGGACACGGATCTGCTGCGC
GGCAAGGCGATGGAGGCGATAGCGCTCATGGGACAGGCGGTCGGACTGGA
AGTGTTCCGCGAAGACGCGCACCAGGCGAGCGAGCTGTCCCAGGTGTTGG
GCCCCGGATTCGGCTCCTTCTACGGCACCTTCGTGCCTATGGCCAAGGAA
ATTATCAGCTGCGCGGCCGCCGCACCGGCGGGCGTGCCCCCGGGGTCGCC
GCTCTCGGAGGACACGGACACGGATCTGCTGCGCGGCAAGGCGATGGAGG
CGATAGCGCTCATGGGACAGGCGGTCGGACTGGAAGTGTTCCGCGAAGAC
GCGCACCAGGCGAGCGAG
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