mRNA_L-elsbetiae_contig1886.5537.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1886.5537.1
Unique NamemRNA_L-elsbetiae_contig1886.5537.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1886.5537.1 vs. uniprot
Match: D8LR38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR38_ECTSI)

HSP 1 Score: 394 bits (1013), Expect = 5.830e-122
Identity = 216/300 (72.00%), Postives = 241/300 (80.33%), Query Frame = 1 
Query:    4 FMVATANAKLRDATEQLRDVLLHRLRSEARIADMEKRLAVVKANRQKYAEDHARLTHEIDLFYYTKRDSQVVTPIGWATVNSYREEDQMLSVTLPFCRPLARMWIPVEKVWQLDRAGQQAETVGMEAEDVQCRLLFRNERVTIARECGRMLTEEQATREMMREEADIADEKRLAAKIVAQAKVAAPRLATMSAISEHRNRWVAYKVQKAVEQRERDIAKWATKTEGGADDDSLDTTTKPRKVKGALERALMASRFRTEFVDIYIETYVKNAE---LRVAKVPDTRVPDE--FLRADISHL 888
            F+VATANAKLRDAT+QLRDVLLHRLRSEARI  MEKRLAVVK NR KYAEDHARLTHEI+LFYYTKRDSQVVTPIGWATVNSYREEDQML VTLPFCRP ARMWIPVEKVWQ+DRAGQQAE+VGMEAED+ CRLL+R ERVT+ RE G +LTEE  TREMMREEA+IADEKRLAAK+VAQAKV  PRLATMSAISEHRNRWVAYKVQKAVEQRE+DIAKW  KT+GG D+DSL++  KPRK+     +    +      +  Y+  +VK+     LR       R  DE   +  D SH+
Sbjct: 1709 FLVATANAKLRDATDQLRDVLLHRLRSEARIEAMEKRLAVVKENRHKYAEDHARLTHEIELFYYTKRDSQVVTPIGWATVNSYREEDQMLIVTLPFCRPSARMWIPVEKVWQMDRAGQQAESVGMEAEDIHCRLLYRTERVTMTRERGNVLTEELKTREMMREEAEIADEKRLAAKMVAQAKVTGPRLATMSAISEHRNRWVAYKVQKAVEQREKDIAKWNAKTKGGDDEDSLESNPKPRKMLELRAKDRAEATILDHIIGTYLSEFVKDVAQETLRAGLQAKRRAEDETGLVFPDPSHM 2008
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1886.5537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LR38_ECTSI5.830e-12272.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1886contigL-elsbetiae_contig1886:1228..3613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score401.7
Seed ortholog evalue2.9e-109
Seed eggNOG ortholog2880.D8LR38
Hectar predicted targeting categoryother localisation
EggNOG OGs2C4QV@1,2QVNB@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_004480.1
Exons6
Model size891
Cds size885
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815784.5252097-CDS-L-elsbetiae_contig1886:1227..13921622815784.5252097-CDS-L-elsbetiae_contig1886:1227..1392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1886 1228..1392 -
1691683100.4756331-CDS-L-elsbetiae_contig1886:1227..13921691683100.4756331-CDS-L-elsbetiae_contig1886:1227..1392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1886 1228..1392 -
1622815784.537364-CDS-L-elsbetiae_contig1886:1708..18161622815784.537364-CDS-L-elsbetiae_contig1886:1708..1816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1886 1709..1816 -
1691683100.488981-CDS-L-elsbetiae_contig1886:1708..18161691683100.488981-CDS-L-elsbetiae_contig1886:1708..1816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1886 1709..1816 -
1622815784.5478776-CDS-L-elsbetiae_contig1886:2140..22871622815784.5478776-CDS-L-elsbetiae_contig1886:2140..2287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1886 2141..2287 -
1691683100.5029855-CDS-L-elsbetiae_contig1886:2140..22871691683100.5029855-CDS-L-elsbetiae_contig1886:2140..2287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1886 2141..2287 -
1622815784.558453-CDS-L-elsbetiae_contig1886:2540..26811622815784.558453-CDS-L-elsbetiae_contig1886:2540..2681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1886 2541..2681 -
1691683100.5115855-CDS-L-elsbetiae_contig1886:2540..26811691683100.5115855-CDS-L-elsbetiae_contig1886:2540..2681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1886 2541..2681 -
1622815784.569087-CDS-L-elsbetiae_contig1886:3010..31861622815784.569087-CDS-L-elsbetiae_contig1886:3010..3186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1886 3011..3186 -
1691683100.5224373-CDS-L-elsbetiae_contig1886:3010..31861691683100.5224373-CDS-L-elsbetiae_contig1886:3010..3186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1886 3011..3186 -
1622815784.5799115-CDS-L-elsbetiae_contig1886:3459..36071622815784.5799115-CDS-L-elsbetiae_contig1886:3459..3607Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1886 3460..3607 -
1691683100.5326967-CDS-L-elsbetiae_contig1886:3459..36071691683100.5326967-CDS-L-elsbetiae_contig1886:3459..3607Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1886 3460..3607 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815784.5903456-UTR-L-elsbetiae_contig1886:3607..36131622815784.5903456-UTR-L-elsbetiae_contig1886:3607..3613Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1886 3608..3613 -
1691683100.54204-UTR-L-elsbetiae_contig1886:3607..36131691683100.54204-UTR-L-elsbetiae_contig1886:3607..3613Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1886 3608..3613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1886.5537.1prot_L-elsbetiae_contig1886.5537.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1886 1228..3607 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1886.5537.1

>prot_L-elsbetiae_contig1886.5537.1 ID=prot_L-elsbetiae_contig1886.5537.1|Name=mRNA_L-elsbetiae_contig1886.5537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=295bp
MVATANAKLRDATEQLRDVLLHRLRSEARIADMEKRLAVVKANRQKYAED
HARLTHEIDLFYYTKRDSQVVTPIGWATVNSYREEDQMLSVTLPFCRPLA
RMWIPVEKVWQLDRAGQQAETVGMEAEDVQCRLLFRNERVTIARECGRML
TEEQATREMMREEADIADEKRLAAKIVAQAKVAAPRLATMSAISEHRNRW
VAYKVQKAVEQRERDIAKWATKTEGGADDDSLDTTTKPRKVKGALERALM
ASRFRTEFVDIYIETYVKNAELRVAKVPDTRVPDEFLRADISHLF
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mRNA from alignment at L-elsbetiae_contig1886:1228..3613-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1886.5537.1 ID=mRNA_L-elsbetiae_contig1886.5537.1|Name=mRNA_L-elsbetiae_contig1886.5537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2386bp|location=Sequence derived from alignment at L-elsbetiae_contig1886:1228..3613- (Laminarionema elsbetiae ELsaHSoW15)
GACTTCATGGTGGCGACGGCGAATGCCAAGCTGAGAGACGCCACGGAGCA
GCTGCGGGACGTGCTCTTGCACAGACTGAGGAGCGAGGCAAGGATCGCAG
ACATGGAGAAACGTCTTGCGGTGGTGAAAGCAAACCGACAGAAGTATGCT
GAAGGTAAGATACAGGGTGTTCACCCTTTTAAATCAATTTCTAGCCGGTT
TCCGGCAGGCTTGGAAAAAAAAACAGATAAACAGATAGCTAGGTGTAAGC
ACCGCGTCGAGGAAAGCAGGGGACCCGCAACGTCGAACCTAGGCCTAAGC
CGGCAGAGGGACAGCACCCGTCAAGGGAAGCGCCCGCATTCGAAGACAAT
ATCAACAAACCCAACAGCACTCATTTAAAAAAACCAAGCTATAACAAAAA
AAAAAAAAAAAACGAAAACACACGCAGATCATGCTCGTCTGACGCACGAG
ATAGACCTTTTCTACTACACCAAGCGGGACAGCCAGGTGGTGACGCCCAT
CGGCTGGGCGACAGTGAACAGCTACCGCGAGGAGGACCAGATGCTGAGCG
TCACGCTTCCCTTCTGCCGGCCCTTGGCGCGAATGTGGATCCCTGTCGAG
AAGGTTAGACCCGCCGTCGTTTTTGCTTTCTGCGTGCGCGTACATGTGTA
CCATACGTTTTTTTCCCCCCTCCCACTATTGGCTTGTTGGTCGTCTGCCG
CACTGATCCCCTTCCTCCACTACGACTAGCTAGACGACCCAACCGGGGTC
ACAGAAGAGATACACACCCATGGTGATCTGACTGGCTGATCATCCGGTGA
TTCTCACTTGTCTGTCTATTTTTACGTCGATATGACTCCCTCCAGAATGT
CATATGGGGGGAGCTAAGTTTGACGTCTGCAAACCGGGAGCGCCCACCCC
CGGTTTTGAACCCTCCCGTCCAATACGCTCAGGTGTGGCAACTGGATCGA
GCCGGGCAGCAGGCGGAAACCGTGGGCATGGAGGCAGAAGATGTCCAGTG
CCGTCTGCTCTTCAGAAACGAGAGGGTGACCATAGCTCGCGAGTGCGGGC
GCATGCTCACGGAGGAGCAAGCGGTAAGAAATCGCTTGTCTTTTTGATGG
GGTCCACAGGGACAAAATCGTGCATGCAGAGTTATGCTGCCCCGAATATC
ACCGAGTTGTATATACGTACCTCATGTATAGCGCATGTGCGAAATAGCTG
CGATATTGGCGTACATACACACATACGCGTAAGATCTTGTGCGCGTCCTC
TGTGCCATGTGTCGAGTGCCGAATATCTTTAACCCCGTGCTTTTTGCGCT
TGGCGGATGGATGCCGTCACAACCAGACCAGGGAGATGATGCGCGAGGAG
GCTGACATTGCGGACGAGAAACGGCTAGCGGCAAAGATTGTCGCGCAGGC
CAAAGTAGCAGCGCCGAGGCTGGCCACGATGAGCGCCATCTCCGAGCATC
GAAATCGATGGGTCGCCTACAAGGTCCGTTTCAAGTAAACCGTCGGGCCG
GTAGGATTTCCTAGCATGCGACACGACCGAGCCGAGACAAGCAACCCTAG
CCCCCACAGGCAACAGCGTATGTACCAGGAGAAAAAAAAGTACATAGTCT
TCTTTCGGTCTGGCGACAGGGTCCACTCGCGGTAGGCGACAACATCCTGT
GGAGACTTGCACAGCTACCGAAGCAAGCTACTGCATGTTTAGCTGTGAGA
CGGATTGGTGTATGGCATCGGTTTCATCATCGCTGTCTAGTGTAGACTAG
AGGGCGGCGACATCGACCATTCCCGTTGCTCTCGTGTGGGGTTGCAGGTG
CAAAAAGCCGTGGAACAGAGAGAACGGGACATTGCGAAGTGGGCGACGAA
GACTGAGGGCGGTGCCGACGACGACTCTCTGGACACAACCACAAAGCCTC
GTAAGGTAAAAACCATAGCACGGGTGGACACGAGTTCGGCGTTGGTTTCG
GATGAAAACGCGGTGCCACGCACTCAACGGTTTTCCTCACAGAGAATGAC
TGGCAGGAGCAACAGCGGCGATAAGTCGGGTCGACAGAGCAAGTACACCA
GTAAATGTTTTTGGGAAGAAAGAGGGACCAATGCAATGCTGCATGCAACT
CTTATTTGAGCATCGAATGACGCATCGTTGACGCACAGCAGCGACTACCG
CTACAGCCCCACTCGCCGGTCAGCGACACTTGCTTGTGTTTCCCAATAAT
GTGCATGCTACGTTGGCGAAGGTCAAAGGTGCCCTGGAACGAGCCTTGAT
GGCCAGCAGGTTCCGAACGGAGTTTGTCGACATCTACATCGAGACGTACG
TCAAGAACGCCGAGCTCAGGGTTGCGAAGGTGCCTGATACCCGTGTGCCC
GATGAGTTTTTGCGTGCAGATATTTCGCATTTGTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1886:1228..3613-

>mRNA_L-elsbetiae_contig1886.5537.1 ID=mRNA_L-elsbetiae_contig1886.5537.1|Name=mRNA_L-elsbetiae_contig1886.5537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1770bp|location=Sequence derived from alignment at L-elsbetiae_contig1886:1228..3613- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGCGACGGCGAATGCCAAGCTGAGAGACGCCACGGAGCAGCTGCG
GGACGTGCTCTTGCACAGACTGAGGAGCGAGGCAAGGATCGCAGACATGG
AGAAACGTCTTGCGGTGGTGAAAGCAAACCGACAGAAGTATGCTGAAGAT
GGTGGCGACGGCGAATGCCAAGCTGAGAGACGCCACGGAGCAGCTGCGGG
ACGTGCTCTTGCACAGACTGAGGAGCGAGGCAAGGATCGCAGACATGGAG
AAACGTCTTGCGGTGGTGAAAGCAAACCGACAGAAGTATGCTGAAGATCA
TGCTCGTCTGACGCACGAGATAGACCTTTTCTACTACACCAAGCGGGACA
GCCAGGTGGTGACGCCCATCGGCTGGGCGACAGTGAACAGCTACCGCGAG
GAGGACCAGATGCTGAGCGTCACGCTTCCCTTCTGCCGGCCCTTGGCGCG
AATGTGGATCCCTGTCGAGAAGATCATGCTCGTCTGACGCACGAGATAGA
CCTTTTCTACTACACCAAGCGGGACAGCCAGGTGGTGACGCCCATCGGCT
GGGCGACAGTGAACAGCTACCGCGAGGAGGACCAGATGCTGAGCGTCACG
CTTCCCTTCTGCCGGCCCTTGGCGCGAATGTGGATCCCTGTCGAGAAGGT
GTGGCAACTGGATCGAGCCGGGCAGCAGGCGGAAACCGTGGGCATGGAGG
CAGAAGATGTCCAGTGCCGTCTGCTCTTCAGAAACGAGAGGGTGACCATA
GCTCGCGAGTGCGGGCGCATGCTCACGGAGGAGCAAGCGGTGTGGCAACT
GGATCGAGCCGGGCAGCAGGCGGAAACCGTGGGCATGGAGGCAGAAGATG
TCCAGTGCCGTCTGCTCTTCAGAAACGAGAGGGTGACCATAGCTCGCGAG
TGCGGGCGCATGCTCACGGAGGAGCAAGCGACCAGGGAGATGATGCGCGA
GGAGGCTGACATTGCGGACGAGAAACGGCTAGCGGCAAAGATTGTCGCGC
AGGCCAAAGTAGCAGCGCCGAGGCTGGCCACGATGAGCGCCATCTCCGAG
CATCGAAATCGATGGGTCGCCTACAAGACCAGGGAGATGATGCGCGAGGA
GGCTGACATTGCGGACGAGAAACGGCTAGCGGCAAAGATTGTCGCGCAGG
CCAAAGTAGCAGCGCCGAGGCTGGCCACGATGAGCGCCATCTCCGAGCAT
CGAAATCGATGGGTCGCCTACAAGGTGCAAAAAGCCGTGGAACAGAGAGA
ACGGGACATTGCGAAGTGGGCGACGAAGACTGAGGGCGGTGCCGACGACG
ACTCTCTGGACACAACCACAAAGCCTCGTAAGGTGCAAAAAGCCGTGGAA
CAGAGAGAACGGGACATTGCGAAGTGGGCGACGAAGACTGAGGGCGGTGC
CGACGACGACTCTCTGGACACAACCACAAAGCCTCGTAAGGTCAAAGGTG
CCCTGGAACGAGCCTTGATGGCCAGCAGGTTCCGAACGGAGTTTGTCGAC
ATCTACATCGAGACGTACGTCAAGAACGCCGAGCTCAGGGTTGCGAAGGT
GCCTGATACCCGTGTGCCCGATGAGTTTTTGCGTGCAGATATTTCGCATT
TGTTTGTCAAAGGTGCCCTGGAACGAGCCTTGATGGCCAGCAGGTTCCGA
ACGGAGTTTGTCGACATCTACATCGAGACGTACGTCAAGAACGCCGAGCT
CAGGGTTGCGAAGGTGCCTGATACCCGTGTGCCCGATGAGTTTTTGCGTG
CAGATATTTCGCATTTGTTT
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