Homology
BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Match:
A0A6H5LJ37_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LJ37_9PHAE)
HSP 1 Score: 182 bits (463), Expect = 9.770e-53
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1
Query: 1 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 270
GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG
Sbjct: 361 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 450
BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Match:
A0A7S2Y4I1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4I1_9STRA)
HSP 1 Score: 167 bits (422), Expect = 3.160e-50
Identity = 80/90 (88.89%), Postives = 86/90 (95.56%), Query Frame = 1
Query: 1 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 270
GPPGTGKTLFAKGLA+HSGLEYAI+TGGD+APLGRDAVTE+HK+FDWA AS KGLLLFVDEADAFLRRR+ E ISEDLRNALNAFLYRTG
Sbjct: 1 GPPGTGKTLFAKGLAKHSGLEYAILTGGDVAPLGRDAVTEIHKLFDWANASNKGLLLFVDEADAFLRRRSVEHISEDLRNALNAFLYRTG 90
BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Match:
A0A835YR91_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR91_9STRA)
HSP 1 Score: 175 bits (444), Expect = 4.810e-50
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 1
Query: 1 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 270
GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHK+FDWAQAS KGLLLFVDEADAFLRRR+TE ISEDLRNALNAFLYRTG
Sbjct: 347 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKLFDWAQASNKGLLLFVDEADAFLRRRSTERISEDLRNALNAFLYRTG 436
BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Match:
A0A7S2WW12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW12_9STRA)
HSP 1 Score: 165 bits (418), Expect = 1.200e-49
Identity = 77/90 (85.56%), Postives = 87/90 (96.67%), Query Frame = 1
Query: 1 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 270
GPPGTGKTLFAKGLARHSGLEYAI+TGGD+APLGRDAVTE+HKVF+WA AS +GLLLF+DE+DAFLR+R+TE +SEDLRNALNAFLYRTG
Sbjct: 13 GPPGTGKTLFAKGLARHSGLEYAILTGGDVAPLGRDAVTEIHKVFEWANASNRGLLLFIDESDAFLRKRSTEAMSEDLRNALNAFLYRTG 102
BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Match:
D7FW02_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW02_ECTSI)
HSP 1 Score: 168 bits (425), Expect = 5.340e-48
Identity = 79/90 (87.78%), Postives = 89/90 (98.89%), Query Frame = 1
Query: 1 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 270
GPPGTGKTLFAKGLARHSGL+YAI+TGGD+APLGR+AV+EMHK+FDWAQASR+G+LLFVDEADAFLRRR+TE ISED+RNALNAFLYRTG
Sbjct: 370 GPPGTGKTLFAKGLARHSGLDYAIITGGDVAPLGREAVSEMHKLFDWAQASRRGVLLFVDEADAFLRRRSTERISEDMRNALNAFLYRTG 459
BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Match:
A0A8B7E5I4_HYDVU (ATPase family AAA domain-containing protein 3-like n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7E5I4_HYDVU)
HSP 1 Score: 157 bits (396), Expect = 9.080e-47
Identity = 74/90 (82.22%), Postives = 82/90 (91.11%), Query Frame = 1
Query: 1 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 270
GPPGTGKT+FAK LA HSGL+YAI+TGGD+AP+GRD VT MHKVFDWA SR+GLLLFVDEADAFLRRR+TE ISEDLR+ LNAFLYRTG
Sbjct: 51 GPPGTGKTMFAKSLAYHSGLDYAILTGGDVAPMGRDGVTAMHKVFDWASTSRRGLLLFVDEADAFLRRRSTEHISEDLRSTLNAFLYRTG 140
BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Match:
A0A7S2D4S5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D4S5_9STRA)
HSP 1 Score: 164 bits (415), Expect = 1.740e-46
Identity = 77/90 (85.56%), Postives = 86/90 (95.56%), Query Frame = 1
Query: 1 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 270
GPPGTGKT+FAKGLAR SGLEYAI+TGGD+APLGRDAVTE+HKVFDWA S+KGLLLF+DE+DAFLR+R+TE ISEDLRNALNAFLYRTG
Sbjct: 279 GPPGTGKTMFAKGLARSSGLEYAILTGGDVAPLGRDAVTEIHKVFDWANTSKKGLLLFIDESDAFLRKRSTENISEDLRNALNAFLYRTG 368
BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Match:
A0A7S2ME04_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ME04_9STRA)
HSP 1 Score: 165 bits (417), Expect = 2.230e-46
Identity = 76/90 (84.44%), Postives = 87/90 (96.67%), Query Frame = 1
Query: 1 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 270
GPPGTGKTLFAKGLA+HSGLEYAI+TGGD+APLGRDAVTE+HKVFDWAQ SR+G+LLF+DE+DAFLR+R T+ +SEDLRNALNAFLYRTG
Sbjct: 341 GPPGTGKTLFAKGLAKHSGLEYAILTGGDVAPLGRDAVTEIHKVFDWAQTSRRGVLLFIDESDAFLRKRGTQQMSEDLRNALNAFLYRTG 430
BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Match:
A0A7R9ZQD9_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQD9_9STRA)
HSP 1 Score: 157 bits (398), Expect = 2.360e-46
Identity = 73/90 (81.11%), Postives = 84/90 (93.33%), Query Frame = 1
Query: 1 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 270
GPPGTGKT+FA+GLA HSGL+YA++TGGDIAPLGRDAVTE+HK+FDWA+ SR+GLLLFVDEADAFL+ R T TISED RNALNAFL+RTG
Sbjct: 25 GPPGTGKTMFARGLAHHSGLDYAVLTGGDIAPLGRDAVTELHKLFDWAKTSRRGLLLFVDEADAFLQSRETSTISEDQRNALNAFLFRTG 114
BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Match:
A0A7S2BQU8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQU8_9STRA)
HSP 1 Score: 164 bits (414), Expect = 3.710e-46
Identity = 77/90 (85.56%), Postives = 85/90 (94.44%), Query Frame = 1
Query: 1 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 270
GPPGTGKTLFAK LA+HSGL+YAIMTGGD+APLGRD VTE+HKVF+WAQAS KGLLL +DEADAFLRRR+TE ISED+RNALNAFLYRTG
Sbjct: 314 GPPGTGKTLFAKSLAKHSGLDYAIMTGGDVAPLGRDGVTEIHKVFEWAQASNKGLLLLIDEADAFLRRRSTEVISEDMRNALNAFLYRTG 403
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 9.77e-53 / Id = 100.00 Expect = 3.16e-50 / Id = 88.89 Expect = 4.81e-50 / Id = 95.56 Expect = 1.20e-49 / Id = 85.56 Expect = 5.34e-48 / Id = 87.78 Expect = 9.08e-47 / Id = 82.22 Expect = 1.74e-46 / Id = 85.56 Expect = 2.23e-46 / Id = 84.44 Expect = 2.36e-46 / Id = 81.11 Expect = 3.71e-46 / Id = 85.56 Sequence A0A6H5LJ37_9PHAE A0A7S2Y4I1_9STRA A0A835YR91_9STRA A0A7S2WW12_9STRA D7FW02_ECTSI A0A8B7E5I4_HYDVU A0A7S2D4S5_9STRA A0A7S2ME04_9STRA A0A7R9ZQD9_9STRA A0A7S2BQU8_9STRA
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota
Seed ortholog score 182.2
Seed ortholog evalue 1.1e-43
Seed eggNOG ortholog 2880.D8LFV8
Preferred name ATAD3A
KEGG ko ko:K17681
Hectar predicted targeting category other localisation
GOs GO:0001558,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005886,GO:0006810,GO:0006887,GO:0006955,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0010941,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0032940,GO:0036230,GO:0040008,GO:0042119,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0060548,GO:0065007,GO:0070820,GO:0071840,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099503,GO:0101002,GO:0101003
EggNOG free text desc. mitochondrion organization
EggNOG OGs COG1223@1,KOG0742@2759
COG Functional cat. O
Best tax level Eukaryota
Best eggNOG OG NA|NA|NA
BRITE ko00000,ko03029
Exons 2
Model size 270
Cds size 270
Stop 0
Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815784.4697068-CDS-L-elsbetiae_contig18857:2224..2371 1622815784.4697068-CDS-L-elsbetiae_contig18857:2224..2371 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18857 2225..2371 +
1691683100.4511409-CDS-L-elsbetiae_contig18857:2224..2371 1691683100.4511409-CDS-L-elsbetiae_contig18857:2224..2371 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18857 2225..2371 +
1622815784.4823394-CDS-L-elsbetiae_contig18857:2842..2965 1622815784.4823394-CDS-L-elsbetiae_contig18857:2842..2965 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18857 2843..2965 +
1691683100.4632676-CDS-L-elsbetiae_contig18857:2842..2965 1691683100.4632676-CDS-L-elsbetiae_contig18857:2842..2965 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18857 2843..2965 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig18857.5536.1
>prot_L-elsbetiae_contig18857.5536.1 ID=prot_L-elsbetiae_contig18857.5536.1|Name=mRNA_L-elsbetiae_contig18857.5536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQA SRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG back to top mRNA from alignment at L-elsbetiae_contig18857:2225..2965+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18857.5536.1 ID=mRNA_L-elsbetiae_contig18857.5536.1|Name=mRNA_L-elsbetiae_contig18857.5536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=741bp|location=Sequence derived from alignment at L-elsbetiae_contig18857:2225..2965+ (Laminarionema elsbetiae ELsaHSoW15)GGACCACCGGGGACCGGTAAGACGCTCTTCGCCAAGGGCCTGGCACGCCA
CTCGGGCCTGGAGTACGCCATCATGACTGGCGGCGATATCGCGCCCCTTG
GGAGGGACGCCGTGACGGAGATGCACAAGGTCTTCGACTGGGCTCAG GTA
TTGTACTATCTTATAGTACGGAGTCTCCGTTTTGTTTTTCGCCGTTTCCC
CGTGGAATGTATGTGTAGTCCGTGGATGGGTGTAGCGTATCGTTTTATTT
TTTGCTGCTTTTGCCCGTGAAATCTATGTAGTTTATGTAGCGTGATACGT
TTTGATTGTTTTGCGCTAAAATATGCGAATACCACGAGCAGAACATTGTA
CGTGGTGCTTAAAAATACGTTCCGTATCCCACGCTATGGTAGCATCACTT
GTACAACTTATTTTCCCTACCTTGATTTCCGTCTTGAGCCTTTTTTTTGT
GTGTTGACGGTTTGCATGTATACATACATATAGGCATGAACCGAAGACGG
AGTGTGTTTTGGGTTCTATTTTACTGAGAACTGAAGAGATTGACATTTAT
TTCTTTGTGCCTGCCTGCCCGTGCCCGTGCCCGTCTGTCTGTCCGTCTGT
CTGCCCGTCTATCTGTAGGCGAGCCGCAAGGGCCTTCTCTTGTTCGTCGA
CGAGGCGGACGCGTTCCTGCGGCGGCGCAACACGGAGACCATCAGCGAGG
ACCTGCGCAACGCCCTGAACGCCTTCCTCTACCGCACGGGA back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig18857:2225..2965+
>mRNA_L-elsbetiae_contig18857.5536.1 ID=mRNA_L-elsbetiae_contig18857.5536.1|Name=mRNA_L-elsbetiae_contig18857.5536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig18857:2225..2965+ (Laminarionema elsbetiae ELsaHSoW15) GGACCACCGGGGACCGGTAAGACGCTCTTCGCCAAGGGCCTGGCACGCCA CTCGGGCCTGGAGTACGCCATCATGACTGGCGGCGATATCGCGCCCCTTG GGAGGGACGCCGTGACGGAGATGCACAAGGTCTTCGACTGGGCTCAGGGA CCACCGGGGACCGGTAAGACGCTCTTCGCCAAGGGCCTGGCACGCCACTC GGGCCTGGAGTACGCCATCATGACTGGCGGCGATATCGCGCCCCTTGGGA GGGACGCCGTGACGGAGATGCACAAGGTCTTCGACTGGGCTCAGGCGAGC CGCAAGGGCCTTCTCTTGTTCGTCGACGAGGCGGACGCGTTCCTGCGGCG GCGCAACACGGAGACCATCAGCGAGGACCTGCGCAACGCCCTGAACGCCT TCCTCTACCGCACGGGAGCGAGCCGCAAGGGCCTTCTCTTGTTCGTCGAC GAGGCGGACGCGTTCCTGCGGCGGCGCAACACGGAGACCATCAGCGAGGA CCTGCGCAACGCCCTGAACGCCTTCCTCTACCGCACGGGA back to top