mRNA_L-elsbetiae_contig18846.5532.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18846.5532.1
Unique NamemRNA_L-elsbetiae_contig18846.5532.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18846.5532.1 vs. uniprot
Match: D7FTV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV1_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.930e-19
Identity = 66/138 (47.83%), Postives = 89/138 (64.49%), Query Frame = 1 
Query:  301 VDEDTAQLQGLQQLPNHRRLQGTTQIDVMMLYSTET-FAPG-EEAQLLSTMVAGFSTINEATSNSDI-DLKFNLVRVDQLPYSQTAYNANDPFSELFPEWFAELTKLRTDADVRALRDAYQADLVLLVGSFPGLCGLG 705
             +E++ + QGL   P+ R LQ TT IDV+++YS E  +A G  EAQLL+ +V G  T+N+A +NS I  L++ LV+V +LPYSQ  Y  +D   +L PE    L  L  +++V  LRD YQ DLV LVG FPG CGLG
Sbjct:  141 TEEESLRSQGL---PSDRSLQATTVIDVLIVYSPEAAYARGIAEAQLLTRIVEGMVTLNQAITNSGIAGLEYRLVQVAELPYSQMTYVPSDDI-DLKPE----LDALAANSNVTDLRDQYQGDLVQLVGYFPGTCGLG 270
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BLAST of mRNA_L-elsbetiae_contig18846.5532.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.680e-18
Identity = 64/127 (50.39%), Postives = 85/127 (66.93%), Query Frame = 1 
Query:  334 QQLPNHRRLQGTTQIDVMMLYSTET-FAPG-EEAQLLSTMVAGFSTINEATSNSDI-DLKFNLVRVDQLPYSQTAYNANDPFSELFPEWFAELTKLRTDADVRALRDAYQADLVLLVGSFPGLCGLG 705
            Q + + RRLQGTT IDV+++YS E  +A G  EAQLL+ +V G  T+N+A +NS I  L++ LV+V +LPYSQ AY  +D   +L PE    L  L  +++V  LR+ YQ DLV LVG FPG CGLG
Sbjct:  160 QGMSSDRRLQGTTVIDVLIVYSPEAAYARGIAEAQLLTRIVEGMVTLNQAITNSGIAGLEYRLVQVAELPYSQMAYIPSDDI-DLKPE----LDALAANSNVTDLRNQYQGDLVQLVGYFPGTCGLG 281
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BLAST of mRNA_L-elsbetiae_contig18846.5532.1 vs. uniprot
Match: D8LMP2_ECTSI (Peptidyl-Asp metallopeptidase. metallo peptidase. MEROPS family M72 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP2_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 4.800e-18
Identity = 57/113 (50.44%), Postives = 72/113 (63.72%), Query Frame = 1 
Query:  376 IDVMMLYSTETFAPG--EEAQLLSTMVAGFSTINEATSNSDI-DLKFNLVRVDQLPYSQTAYNANDPFSELFPEWFAELTKLRTDADVRALRDAYQADLVLLVGSFPGLCGLG 705
            IDV++ YS E  +     +AQLL+ +V G  T+N+A +NS I DL++ LV V +LPYSQ  Y+ ND   +L PE    L  L  D+DV  LRD YQ DLV LVG FPG CGLG
Sbjct:   13 IDVLIFYSPEAASSEGISDAQLLTRIVEGMVTLNQAITNSAIADLEYRLVHVAELPYSQMTYDPNDDI-DLGPE----LDALAADSDVDDLRDQYQGDLVQLVGYFPGTCGLG 120
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BLAST of mRNA_L-elsbetiae_contig18846.5532.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.310e-17
Identity = 60/127 (47.24%), Postives = 78/127 (61.42%), Query Frame = 1 
Query:  334 QQLPNHRRLQGTTQIDVMMLYSTETFAPG--EEAQLLSTMVAGFSTINEATSNSDI-DLKFNLVRVDQLPYSQTAYNANDPFSELFPEWFAELTKLRTDADVRALRDAYQADLVLLVGSFPGLCGLG 705
            Q +P+ R LQGTT IDV++ YS E  +     +AQLL+ +V G  T+N+A +NS I DL++ LV V +LPYSQ  Y   DP      +   EL  L  ++ V  LR+ YQ DLV LVG FPG CGLG
Sbjct:  338 QGIPSDRSLQGTTVIDVLIFYSPEAASSEGISDAQLLTRIVEGMVTLNQAITNSAIADLEYRLVHVAELPYSQMTY---DPIDSDDIDLEPELDALAANSAVNDLRNEYQGDLVQLVGYFPGTCGLG 461
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18846.5532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FTV1_ECTSI1.930e-1947.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRC1_9PHAE3.680e-1850.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMP2_ECTSI4.800e-1850.44Peptidyl-Asp metallopeptidase. metallo peptidase. ... [more]
A0A6H5JF50_9PHAE2.310e-1747.24LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18846contigL-elsbetiae_contig18846:388..2887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1123
Cds size621
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18846.5532.1prot_L-elsbetiae_contig18846.5532.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18846 803..2800 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815784.1409512-UTR-L-elsbetiae_contig18846:387..8021622815784.1409512-UTR-L-elsbetiae_contig18846:387..802Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18846 388..802 -
1691683100.199733-UTR-L-elsbetiae_contig18846:387..8021691683100.199733-UTR-L-elsbetiae_contig18846:387..802Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18846 388..802 -
1622815784.2016232-UTR-L-elsbetiae_contig18846:2800..28871622815784.2016232-UTR-L-elsbetiae_contig18846:2800..2887Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18846 2801..2887 -
1691683100.2555647-UTR-L-elsbetiae_contig18846:2800..28871691683100.2555647-UTR-L-elsbetiae_contig18846:2800..2887Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18846 2801..2887 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815784.1525373-CDS-L-elsbetiae_contig18846:802..9821622815784.1525373-CDS-L-elsbetiae_contig18846:802..982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18846 803..982 -
1691683100.2178893-CDS-L-elsbetiae_contig18846:802..9821691683100.2178893-CDS-L-elsbetiae_contig18846:802..982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18846 803..982 -
1622815784.1625261-CDS-L-elsbetiae_contig18846:1404..15571622815784.1625261-CDS-L-elsbetiae_contig18846:1404..1557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18846 1405..1557 -
1691683100.226939-CDS-L-elsbetiae_contig18846:1404..15571691683100.226939-CDS-L-elsbetiae_contig18846:1404..1557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18846 1405..1557 -
1622815784.179345-CDS-L-elsbetiae_contig18846:2173..22631622815784.179345-CDS-L-elsbetiae_contig18846:2173..2263Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18846 2174..2263 -
1691683100.2373762-CDS-L-elsbetiae_contig18846:2173..22631691683100.2373762-CDS-L-elsbetiae_contig18846:2173..2263Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18846 2174..2263 -
1622815784.190093-CDS-L-elsbetiae_contig18846:2602..28001622815784.190093-CDS-L-elsbetiae_contig18846:2602..2800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18846 2603..2800 -
1691683100.2465193-CDS-L-elsbetiae_contig18846:2602..28001691683100.2465193-CDS-L-elsbetiae_contig18846:2602..2800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18846 2603..2800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18846.5532.1

>prot_L-elsbetiae_contig18846.5532.1 ID=prot_L-elsbetiae_contig18846.5532.1|Name=mRNA_L-elsbetiae_contig18846.5532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=207bp
MYCATCRTKRGKNHPMSSKSCVPPSFLWPLHHPQLSVVFYPHQDVEVPEP
DTPSESSPDRQDIHVPETPLTVDEDTAQLQGLQQLPNHRRLQGTTQIDVM
MLYSTETFAPGEEAQLLSTMVAGFSTINEATSNSDIDLKFNLVRVDQLPY
SQTAYNANDPFSELFPEWFAELTKLRTDADVRALRDAYQADLVLLVGSFP
GLCGLG*
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mRNA from alignment at L-elsbetiae_contig18846:388..2887-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18846.5532.1 ID=mRNA_L-elsbetiae_contig18846.5532.1|Name=mRNA_L-elsbetiae_contig18846.5532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2500bp|location=Sequence derived from alignment at L-elsbetiae_contig18846:388..2887- (Laminarionema elsbetiae ELsaHSoW15)
GACCTGTCTCTCCAGACCTAGGTCTCACTAATACAATACCTTTCTACAAA
AGCCACTGATTTACCAACAGAGACAACGCCCGACGAGATGTACTGTGCCA
CGTGTAGGACCAAGCGTGGGAAAAACCACCCGATGTCCTCAAAATCCTGC
GTACCGCCTTCCTTTCTATGGCCCCTACATCACCCGCAGCTTTCGGTAGT
CTTCTACCCGCACCAGGACGTAGAGGTACCTGAACCGGACACCCCAAGCG
AAAGCTCGCCGGACCGTCAGGATATCCACGTACCGGTGAGTCGAGGCACC
TAGCCTGGTTCAGGGCGACCTACTCTACGCTTTCTTGCGGACGGCGACCA
CGTCGCAGCAGGAAGGAATGAGCCGCTTGTGCGCAGCCCCGATCCAGCAG
GTCGTGCTGGTGAAAGGCAGTCGAGGGCTGGCAGCGTTCAGTTGGGAAGC
ACCGATGTTGGTTGCGATTTTCTTCGTCCGCACCGTGCGTTCCTCTCGAG
TTCTGGATGCCAAGCGCTGCTTTTGGACGCCCCTCGGCTTGGCTTAGCTT
CGTGCTTCTTGGCCTGCATTGTATCCGTCCGTGTACTTATCCACCCCAAT
TTCGGCGCTTTCTCATGGTGCCAGGAAACGCCGCTCACTGTGGATGAGGA
CACTGCACAATTGCAAGGACTGCAGCAACTGCCGAACCACCGTAGGCTTC
AGGGCACCACCCAGGTACTACATACCTTAAGCCCGAAGCGTCTCACCACA
CCACTCACCCCTTATCGCGAAGAAGCCGTAACGTCGCCATTCCAGCGGAG
TGCTTCCTGCACGCTTCACTGTTTAGATCGGGTGTGTTCGAGTTTGTCGG
CCGAGACTCCAATATGGACCTCTCGAGAAGTCACGAGTGCGACGGGCACG
CCTCGACATTATTTGCACCATATGTTTTGTACCATCAACCACCCCTTCTC
GACAGATTTGGTGTCCGAGTCGTCGCGGGGCAGGCTCGCGCTGTCTGGAG
GACACTCGTGTCAAGTAGACGAGTGGCGCTGAATGCAGAGTGGATACATT
CTCGTATTTCGTTCTGCCAGTAGGCAGATTCGGAATCACATTTTTTTGTC
TGTTTTTAGTATTCCATACATCATAAGTTTTTTGCGGTGTACAAGTTCAC
CGGCTTCGAAGCCTGCACTCTGGTGTAGCCAGGAGGGCAAATAGGATGAA
TCACTGACATCCGTGCCGATACCGCAATGGTTGTCACTAGCGCCACCTCC
AACACGAACGCAAACCTCGTGCCTTTCGGGGCGTCCACGCTCCTCGAACT
CTCTGTCACCCCGTGCACTCGCCGTTGCAGATAGACGTCATGATGTTGTA
CTCCACCGAAACTTTTGCCCCCGGGGAGGAGGCGCAGTTGCTATCCACCA
TGGTCGCCGGTTTCTCGACAATAAACGAGGCCACCTCGAACTCAGATATT
GACCTCAAGTTTAATCTAGTCCGTGTAGACCAGGTAAGCGCTGGGCTGCA
CCCATGGGGCCCCCGTGGTATAACAGTGGCAGTGCTGCCGCTTCACGGAA
AAGCATGCTACTGCTTGTTTGTATTAGCTGATATTGCTAAAAGCTCGGGT
TGTACTTGGAGTGCGGCCGCAGCGACCTTGTTTGTGTATGGTATGCTGCA
GCGTGGAGGCGTACACGCTGCTGTGGAAAACATGGTATTTTACAACATCC
CGACGAAGCCAGAGAGGGGTGTAGGTCATGTTGCAGGCAAGTTCTTGATC
ACACTTTGATTGGAAGTGAAGGCTGCCCCGCCCAGTTCTGGGCTCTTGCA
AGCCTGGGTGTTCATTATTTCTAACTCCCTCCGAATGCAACATTGTGGTT
CGTTCCCATCGCTCGTGTTCTGATGTAACCCTTCGCTTTTCTTCGCTCTG
CGCAGCTACCCTACAGCCAAACCGCGTACAATGCCAACGACCCTTTTAGT
GAGTTGTTTCCCGAATGGTTCGCTGAACTTACTAAGTTGAGGACCGATGC
TGACGTGCGAGCGCTCCGCGACGCATACCAAGCGGATCTGGTGCTGCTAG
TCGGCAGCTTCCCGGGCCTTTGTGGGCTAGGGTAAGGGCAAGCGGCACGA
TCGGGTTTAGGCTGTATACATGGAGAAGAGTACGGAATAGACCCAGGCGC
ACATCGATATCAGTCGTATGTAGTAATCGAAGTCTAACTCAACCGACAAC
CCTGTGAGTTATACTCTAACTACACAACAGTTTTTTCGTTGGTGCCGTTA
GATTTGGGGGGGGTACTGCGGTGGTGTGTCGTATGTCGGCATGCACTGAC
GGTGTGTGCGGAATCAGTGGAAGTTGTCAGGTGTTACGTACTGCTGTAAG
GGGCTCAAAATTGCGTGCAGCGCCCAGATTCAAAGCATGCCTTTACGCGC
GTATGTTCTGGCTAGACCGTAGTGATGAATGATCATCAGAAAACAAGCTG
CTCAACGCAGATGAATGCCCCGACCCCCCGAACTGGTCCATCCCGAAAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18846:388..2887-

>mRNA_L-elsbetiae_contig18846.5532.1 ID=mRNA_L-elsbetiae_contig18846.5532.1|Name=mRNA_L-elsbetiae_contig18846.5532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1242bp|location=Sequence derived from alignment at L-elsbetiae_contig18846:388..2887- (Laminarionema elsbetiae ELsaHSoW15)
ATGTACTGTGCCACGTGTAGGACCAAGCGTGGGAAAAACCACCCGATGTC
CTCAAAATCCTGCGTACCGCCTTCCTTTCTATGGCCCCTACATCACCCGC
AGCTTTCGGTAGTCTTCTACCCGCACCAGGACGTAGAGGTACCTGAACCG
GACACCCCAAGCGAAAGCTCGCCGGACCGTCAGGATATCCACGTACCGAT
GTACTGTGCCACGTGTAGGACCAAGCGTGGGAAAAACCACCCGATGTCCT
CAAAATCCTGCGTACCGCCTTCCTTTCTATGGCCCCTACATCACCCGCAG
CTTTCGGTAGTCTTCTACCCGCACCAGGACGTAGAGGTACCTGAACCGGA
CACCCCAAGCGAAAGCTCGCCGGACCGTCAGGATATCCACGTACCGGAAA
CGCCGCTCACTGTGGATGAGGACACTGCACAATTGCAAGGACTGCAGCAA
CTGCCGAACCACCGTAGGCTTCAGGGCACCACCCAGGAAACGCCGCTCAC
TGTGGATGAGGACACTGCACAATTGCAAGGACTGCAGCAACTGCCGAACC
ACCGTAGGCTTCAGGGCACCACCCAGATAGACGTCATGATGTTGTACTCC
ACCGAAACTTTTGCCCCCGGGGAGGAGGCGCAGTTGCTATCCACCATGGT
CGCCGGTTTCTCGACAATAAACGAGGCCACCTCGAACTCAGATATTGACC
TCAAGTTTAATCTAGTCCGTGTAGACCAGATAGACGTCATGATGTTGTAC
TCCACCGAAACTTTTGCCCCCGGGGAGGAGGCGCAGTTGCTATCCACCAT
GGTCGCCGGTTTCTCGACAATAAACGAGGCCACCTCGAACTCAGATATTG
ACCTCAAGTTTAATCTAGTCCGTGTAGACCAGCTACCCTACAGCCAAACC
GCGTACAATGCCAACGACCCTTTTAGTGAGTTGTTTCCCGAATGGTTCGC
TGAACTTACTAAGTTGAGGACCGATGCTGACGTGCGAGCGCTCCGCGACG
CATACCAAGCGGATCTGGTGCTGCTAGTCGGCAGCTTCCCGGGCCTTTGT
GGGCTAGGGTAACTACCCTACAGCCAAACCGCGTACAATGCCAACGACCC
TTTTAGTGAGTTGTTTCCCGAATGGTTCGCTGAACTTACTAAGTTGAGGA
CCGATGCTGACGTGCGAGCGCTCCGCGACGCATACCAAGCGGATCTGGTG
CTGCTAGTCGGCAGCTTCCCGGGCCTTTGTGGGCTAGGGTAA
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