mRNA_L-elsbetiae_contig18843.5531.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18843.5531.1
Unique NamemRNA_L-elsbetiae_contig18843.5531.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig18843.5531.1 vs. uniprot
Match: D7FZ32_ECTSI (Agmatinase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ32_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 1.290e-56
Identity = 87/102 (85.29%), Postives = 91/102 (89.22%), Query Frame = 1
Query:    1 WARRTTVLVADDIDSLDAAFVPGTGWPEPGGLLPREAHKLVGGVAKEGLCGMELVEVSPPYDVSDTTSLQALRLIVETMGSMVAHGKMGKHKHIIDKEFVPF 306
            W     V ++ DIDSLDAAFVPGTGWPEPGGLLPREAHKLVGGVAKEGLCGMELVEVSPPYDVSDTTSLQALRLIVETMGS+V+H KMG HK IIDKEF PF
Sbjct:  109 WDGCDAVYMSYDIDSLDAAFVPGTGWPEPGGLLPREAHKLVGGVAKEGLCGMELVEVSPPYDVSDTTSLQALRLIVETMGSLVSHDKMGSHKDIIDKEFTPF 210          
BLAST of mRNA_L-elsbetiae_contig18843.5531.1 vs. uniprot
Match: A0A6H5KKR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKR4_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 3.940e-54
Identity = 87/102 (85.29%), Postives = 91/102 (89.22%), Query Frame = 1
Query:    1 WARRTTVLVADDIDSLDAAFVPGTGWPEPGGLLPREAHKLVGGVAKEGLCGMELVEVSPPYDVSDTTSLQALRLIVETMGSMVAHGKMGKHKHIIDKEFVPF 306
            W     V ++ DIDSLDAAFVPGTGWPEPGGLLPREAHKLVGGVAKEGLCGMELVEVSPPYDVSDTTSLQALRLIVETMGS+V+H KMG HK IIDKEF PF
Sbjct:  321 WDGCDAVYMSYDIDSLDAAFVPGTGWPEPGGLLPREAHKLVGGVAKEGLCGMELVEVSPPYDVSDTTSLQALRLIVETMGSLVSHDKMGSHKDIIDKEFTPF 422          
BLAST of mRNA_L-elsbetiae_contig18843.5531.1 vs. uniprot
Match: A0A835Z9U8_9STRA (Agmatinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9U8_9STRA)

HSP 1 Score: 176 bits (447), Expect = 8.350e-52
Identity = 82/102 (80.39%), Postives = 89/102 (87.25%), Query Frame = 1
Query:    1 WARRTTVLVADDIDSLDAAFVPGTGWPEPGGLLPREAHKLVGGVAKEGLCGMELVEVSPPYDVSDTTSLQALRLIVETMGSMVAHGKMGKHKHIIDKEFVPF 306
            W     V ++ DIDSLDAAFVPGTGWPEPGGLLPREAHKLVGGVA+EGLCGMELVEVSPPYDVSDTT+LQ LR+IVE MGS+V+HGKMG HK IIDK F PF
Sbjct:  315 WKDCDAVYLSYDIDSLDAAFVPGTGWPEPGGLLPREAHKLVGGVAREGLCGMELVEVSPPYDVSDTTALQGLRIIVEAMGSLVSHGKMGAHKSIIDKPFTPF 416          
BLAST of mRNA_L-elsbetiae_contig18843.5531.1 vs. uniprot
Match: A0A7R9UK07_DIALT (Hypothetical protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UK07_DIALT)

HSP 1 Score: 168 bits (426), Expect = 7.860e-49
Identity = 79/102 (77.45%), Postives = 88/102 (86.27%), Query Frame = 1
Query:    1 WARRTTVLVADDIDSLDAAFVPGTGWPEPGGLLPREAHKLVGGVAKEGLCGMELVEVSPPYDVSDTTSLQALRLIVETMGSMVAHGKMGKHKHIIDKEFVPF 306
            W     V ++ DIDS++AAFVPGTGWPEPGGLLPREA KLVG VAKEGLCGME+VEVSPPYDVSD TSL ALRL+V+TMG++VAHGKMG HK IIDK FVPF
Sbjct:  299 WCGTDAVYLSYDIDSIEAAFVPGTGWPEPGGLLPREALKLVGLVAKEGLCGMEIVEVSPPYDVSDITSLMALRLMVDTMGALVAHGKMGAHKRIIDKPFVPF 400          
BLAST of mRNA_L-elsbetiae_contig18843.5531.1 vs. uniprot
Match: C1E523_MICCC (Arginase/agmatinase/formimionoglutamate hydrolase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E523_MICCC)

HSP 1 Score: 166 bits (421), Expect = 2.460e-47
Identity = 79/102 (77.45%), Postives = 87/102 (85.29%), Query Frame = 1
Query:    1 WARRTTVLVADDIDSLDAAFVPGTGWPEPGGLLPREAHKLVGGVAKEGLCGMELVEVSPPYDVSDTTSLQALRLIVETMGSMVAHGKMGKHKHIIDKEFVPF 306
            W     V ++ DIDSL+AAFVPGTGWPEPGGLLPREA KLVG VA EGLCG+E+VEVSPPYDVSD TSL ALR+ V+ MGSMVA+GKMG HKHIIDKEFVPF
Sbjct:  387 WDGADAVYMSYDIDSLEAAFVPGTGWPEPGGLLPREALKLVGLVAAEGLCGLEIVEVSPPYDVSDITSLMALRIAVDVMGSMVANGKMGAHKHIIDKEFVPF 488          
BLAST of mRNA_L-elsbetiae_contig18843.5531.1 vs. uniprot
Match: B7GCN5_PHATC (Agmatinase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GCN5_PHATC)

HSP 1 Score: 164 bits (414), Expect = 6.710e-47
Identity = 76/102 (74.51%), Postives = 87/102 (85.29%), Query Frame = 1
Query:    1 WARRTTVLVADDIDSLDAAFVPGTGWPEPGGLLPREAHKLVGGVAKEGLCGMELVEVSPPYDVSDTTSLQALRLIVETMGSMVAHGKMGKHKHIIDKEFVPF 306
            W     V ++ DIDS++AAFVPGTGWPEPGGLLPREA KLVG VA EGLCGME+VEVSPPYD +D TSL ALR++V+ +GSMV+HG MGKHKHIIDKEFVPF
Sbjct:  315 WDGCDAVYMSYDIDSIEAAFVPGTGWPEPGGLLPREALKLVGLVAAEGLCGMEVVEVSPPYDHADITSLMALRIVVDALGSMVSHGTMGKHKHIIDKEFVPF 416          
BLAST of mRNA_L-elsbetiae_contig18843.5531.1 vs. uniprot
Match: A0A0G4EJG8_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EJG8_VITBC)

HSP 1 Score: 163 bits (412), Expect = 1.060e-46
Identity = 76/102 (74.51%), Postives = 85/102 (83.33%), Query Frame = 1
Query:    1 WARRTTVLVADDIDSLDAAFVPGTGWPEPGGLLPREAHKLVGGVAKEGLCGMELVEVSPPYDVSDTTSLQALRLIVETMGSMVAHGKMGKHKHIIDKEFVPF 306
            W     V ++ DID +DAAFVPGTGWPEPGG LPREA K+VG VAKEGLCGME+VEVSPPYD SD TSL ALR+IV+T+GS+VAHGKMG HKHIIDK F PF
Sbjct:  304 WDGVDAVWLSFDIDCIDAAFVPGTGWPEPGGFLPREALKMVGLVAKEGLCGMEIVEVSPPYDTSDITSLMALRVIVDTLGSLVAHGKMGAHKHIIDKPFSPF 405          
BLAST of mRNA_L-elsbetiae_contig18843.5531.1 vs. uniprot
Match: A0A7S2C829_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2C829_9DINO)

HSP 1 Score: 158 bits (400), Expect = 1.900e-46
Identity = 73/101 (72.28%), Postives = 84/101 (83.17%), Query Frame = 1
Query:    1 WARRTTVLVADDIDSLDAAFVPGTGWPEPGGLLPREAHKLVGGVAKEGLCGMELVEVSPPYDVSDTTSLQALRLIVETMGSMVAHGKMGKHKHIIDKEFVP 303
            W     V ++ DIDS+D AFVPGTGWPEPGGLLPREA KLVG +AKEGLCGME+VEVSPPYD +D TSL ALR+IV+T+GSMVAHGK+G HK IIDK + P
Sbjct:  158 WKDADAVWLSYDIDSIDCAFVPGTGWPEPGGLLPREALKLVGSIAKEGLCGMEVVEVSPPYDHADITSLMALRIIVDTLGSMVAHGKLGAHKPIIDKPWTP 258          
BLAST of mRNA_L-elsbetiae_contig18843.5531.1 vs. uniprot
Match: K8FHZ3_9CHLO (Agmatinase n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8FHZ3_9CHLO)

HSP 1 Score: 162 bits (411), Expect = 2.790e-46
Identity = 75/102 (73.53%), Postives = 85/102 (83.33%), Query Frame = 1
Query:    1 WARRTTVLVADDIDSLDAAFVPGTGWPEPGGLLPREAHKLVGGVAKEGLCGMELVEVSPPYDVSDTTSLQALRLIVETMGSMVAHGKMGKHKHIIDKEFVPF 306
            W     V ++ DIDS++A FVPGTGWPEPGG LPREA KLVG VA EGLCGME+VEVSPPYDVSD T+L  LR+ V+ MG+MVAHGKMGKH+HIIDKEFVPF
Sbjct:  335 WDGCDAVYLSYDIDSIEAGFVPGTGWPEPGGFLPREALKLVGLVAAEGLCGMEVVEVSPPYDVSDITALMGLRICVDAMGAMVAHGKMGKHRHIIDKEFVPF 436          
BLAST of mRNA_L-elsbetiae_contig18843.5531.1 vs. uniprot
Match: A0A7S2XSC0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XSC0_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.420e-45
Identity = 74/101 (73.27%), Postives = 86/101 (85.15%), Query Frame = 1
Query:    1 WARRTTVLVADDIDSLDAAFVPGTGWPEPGGLLPREAHKLVGGVAKEGLCGMELVEVSPPYDVSDTTSLQALRLIVETMGSMVAHGKMGKHKHIIDKEFVP 303
            W     V ++ DIDS++AAFVPGTGWPEPGGLLPREA KLVG VAKEGLCGME+VEVSPPYD +D TSL ALR++V+ +G+MV+HG MGKHKHIIDK FVP
Sbjct:  314 WDGCDAVYMSYDIDSIEAAFVPGTGWPEPGGLLPREALKLVGLVAKEGLCGMEVVEVSPPYDHADITSLMALRIVVDALGAMVSHGTMGKHKHIIDKPFVP 414          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18843.5531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ32_ECTSI1.290e-5685.29Agmatinase, partial n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KKR4_9PHAE3.940e-5485.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z9U8_9STRA8.350e-5280.39Agmatinase n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A7R9UK07_DIALT7.860e-4977.45Hypothetical protein n=1 Tax=Diacronema lutheri Ta... [more]
C1E523_MICCC2.460e-4777.45Arginase/agmatinase/formimionoglutamate hydrolase ... [more]
B7GCN5_PHATC6.710e-4774.51Agmatinase n=1 Tax=Phaeodactylum tricornutum (stra... [more]
A0A0G4EJG8_VITBC1.060e-4674.51Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A7S2C829_9DINO1.900e-4672.28Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
K8FHZ3_9CHLO2.790e-4673.53Agmatinase n=1 Tax=Bathycoccus prasinos TaxID=4187... [more]
A0A7S2XSC0_9STRA1.420e-4573.27Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18843contigL-elsbetiae_contig18843:1813..2717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.3
Seed ortholog evalue4.7e-43
Seed eggNOG ortholog2880.D7FZ32
Hectar predicted targeting categoryother localisation
EggNOG free text desc.agmatinase activity
EggNOG OGsCOG0010@1,KOG2964@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionagmatinase, partial
Ec32 orthologEc-17_004300.1
Exons2
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815784.087134-CDS-L-elsbetiae_contig18843:1812..19531622815784.087134-CDS-L-elsbetiae_contig18843:1812..1953Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18843 1813..1953 -
1691683100.174294-CDS-L-elsbetiae_contig18843:1812..19531691683100.174294-CDS-L-elsbetiae_contig18843:1812..1953Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18843 1813..1953 -
1622815784.1014297-CDS-L-elsbetiae_contig18843:2549..27171622815784.1014297-CDS-L-elsbetiae_contig18843:2549..2717Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18843 2550..2717 -
1691683100.1878898-CDS-L-elsbetiae_contig18843:2549..27171691683100.1878898-CDS-L-elsbetiae_contig18843:2549..2717Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18843 2550..2717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18843.5531.1prot_L-elsbetiae_contig18843.5531.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18843 1813..2717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18843.5531.1

>prot_L-elsbetiae_contig18843.5531.1 ID=prot_L-elsbetiae_contig18843.5531.1|Name=mRNA_L-elsbetiae_contig18843.5531.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
WARRTTVLVADDIDSLDAAFVPGTGWPEPGGLLPREAHKLVGGVAKEGLC
GMELVEVSPPYDVSDTTSLQALRLIVETMGSMVAHGKMGKHKHIIDKEFV
PF*
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mRNA from alignment at L-elsbetiae_contig18843:1813..2717-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18843.5531.1 ID=mRNA_L-elsbetiae_contig18843.5531.1|Name=mRNA_L-elsbetiae_contig18843.5531.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=905bp|location=Sequence derived from alignment at L-elsbetiae_contig18843:1813..2717- (Laminarionema elsbetiae ELsaHSoW15)
TGGGCACGACGAACGACGGTGCTGGTCGCAGACGACATCGACTCCCTTGA CGCCGCGTTCGTGCCCGGAACGGGCTGGCCCGAGCCTGGCGGGCTGCTGC CGCGAGAGGCGCACAAGCTTGTTGGAGGCGTTGCGAAGGAGGGGCTGTGC GGCATGGAGCTTGTGGAGGTAAGACATGCGTCTTGGTCGTGCTGGAGCCA GTTGTTCGGAATGCTCGCTCGCGCTGTGAGTGTGTGGGTGTAACTTGCCT GCGTGCCGCTTCAGGTCTTGGAGGCACGACATATGTCTGCGGTTGTTGCG TTTTCCCAAGACGCACGCAAGATGCGCGATGAAGCTGTTCATTAGCGACA CGGTAGGCGCGGTGCGTCGCCGTAGACTATAACCTGGCCAGCGTTGATTC GCGTTTCGTGCCAGGAATACTTCGGGTACCGATCGCAACAAAACTTCAAG CGTGATATCAGAGATTTGTTGGATGGAAGAATCGGCGGCCCATGCCAGCC TTTGCCTGCTGGCTAAGTTTTAATAACACATGCACGGCAGGAAACCGAAC CCCTCTGAAACACAAAACATTTCAAGAGTGCGATACGGCGCCAACGAGAA GCCCTGCTTTCGATGCCTGTTTTAGGGTCTGGCGGCGTTTGTCATTGAAA GCATCCACGGCCCGGATGTATCTGCTATGATCTACGATTGACAACCGGGA CCCCGACCCCCGACCCCCCCCCCCCCCGTTGTGTCGTTGTGTTGTGTGCC TTTGGTGAGAGCAGGTGAGCCCCCCGTACGACGTGTCGGACACGACGTCC CTGCAGGCGCTGCGCCTGATCGTAGAGACGATGGGCTCGATGGTGGCTCA CGGCAAAATGGGGAAGCACAAGCACATCATCGACAAGGAGTTCGTACCGT TCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18843:1813..2717-

>mRNA_L-elsbetiae_contig18843.5531.1 ID=mRNA_L-elsbetiae_contig18843.5531.1|Name=mRNA_L-elsbetiae_contig18843.5531.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig18843:1813..2717- (Laminarionema elsbetiae ELsaHSoW15)
TGGGCACGACGAACGACGGTGCTGGTCGCAGACGACATCGACTCCCTTGA
CGCCGCGTTCGTGCCCGGAACGGGCTGGCCCGAGCCTGGCGGGCTGCTGC
CGCGAGAGGCGCACAAGCTTGTTGGAGGCGTTGCGAAGGAGGGGCTGTGC
GGCATGGAGCTTGTGGAGTGGGCACGACGAACGACGGTGCTGGTCGCAGA
CGACATCGACTCCCTTGACGCCGCGTTCGTGCCCGGAACGGGCTGGCCCG
AGCCTGGCGGGCTGCTGCCGCGAGAGGCGCACAAGCTTGTTGGAGGCGTT
GCGAAGGAGGGGCTGTGCGGCATGGAGCTTGTGGAGGTGAGCCCCCCGTA
CGACGTGTCGGACACGACGTCCCTGCAGGCGCTGCGCCTGATCGTAGAGA
CGATGGGCTCGATGGTGGCTCACGGCAAAATGGGGAAGCACAAGCACATC
ATCGACAAGGAGTTCGTACCGTTCTGAGTGAGCCCCCCGTACGACGTGTC
GGACACGACGTCCCTGCAGGCGCTGCGCCTGATCGTAGAGACGATGGGCT
CGATGGTGGCTCACGGCAAAATGGGGAAGCACAAGCACATCATCGACAAG
GAGTTCGTACCGTTCTGA
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