mRNA_L-elsbetiae_contig1883.5525.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1883.5525.1
Unique NamemRNA_L-elsbetiae_contig1883.5525.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1883.5525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1883contigL-elsbetiae_contig1883:22081..22647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size191
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.6999624-CDS-L-elsbetiae_contig1883:22080..221871622815783.6999624-CDS-L-elsbetiae_contig1883:22080..22187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1883 22081..22187 +
1691683099.9642873-CDS-L-elsbetiae_contig1883:22080..221871691683099.9642873-CDS-L-elsbetiae_contig1883:22080..22187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1883 22081..22187 +
1622815783.7189286-CDS-L-elsbetiae_contig1883:22564..226461622815783.7189286-CDS-L-elsbetiae_contig1883:22564..22646Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1883 22565..22646 +
1691683099.9743721-CDS-L-elsbetiae_contig1883:22564..226461691683099.9743721-CDS-L-elsbetiae_contig1883:22564..22646Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1883 22565..22646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1883.5525.1prot_L-elsbetiae_contig1883.5525.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1883 22081..22646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1883.5525.1

>prot_L-elsbetiae_contig1883.5525.1 ID=prot_L-elsbetiae_contig1883.5525.1|Name=mRNA_L-elsbetiae_contig1883.5525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=63bp
IYVSVSGSIFLHLRVPGQSTIPGSGRDNSAAAASIRSRTRWPRRNAPRWL
SWFVRHNWGTKVE
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mRNA from alignment at L-elsbetiae_contig1883:22081..22647+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1883.5525.1 ID=mRNA_L-elsbetiae_contig1883.5525.1|Name=mRNA_L-elsbetiae_contig1883.5525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=567bp|location=Sequence derived from alignment at L-elsbetiae_contig1883:22081..22647+ (Laminarionema elsbetiae ELsaHSoW15)
ATATACGTCTCTGTCTCTGGATCTATTTTTCTACACCTCCGAGTACCGGG
TCAGTCGACGATACCTGGGTCAGGTCGCGACAATTCCGCTGCTGCTGCTA
GTATACGGTATGGGCACACAAGAGTAGGCAGGGCCAGCGCTCGGAAATAC
CTGATGAAAAGGTTATATTCATTCAAGCCTCCCTGGAGTGTCCTTCGCTT
TTGCAGTTCATGTGCCGTGCCTTTTTTCCAGCTGCACACATCGTAGTGGG
GATCTTCTCTAGGAGACACAACAAAATATATTCGTCAAATCTGGAGAACT
TTCGTACTTTGAAGGAGGCAGGCTGATCTAATGGAGCAGCCGCTGCCACA
AGAGCATGTTCGATATCGATCATCACACTAGCAGTAGCTCCGGCATACCT
CTATGTCATCTACTTCGCTCTCGGCATCCGCAACAACAATTACAGCTGCG
TTTGTCCATTCTGCACTTTCTGCACTCCCCGTAGGTCCCGTACACGGTGG
CCACGACGAAATGCTCCTCGGTGGTTGTCCTGGTTCGTTCGACACAACTG
GGGCACAAAAGTCGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1883:22081..22647+

>mRNA_L-elsbetiae_contig1883.5525.1 ID=mRNA_L-elsbetiae_contig1883.5525.1|Name=mRNA_L-elsbetiae_contig1883.5525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=378bp|location=Sequence derived from alignment at L-elsbetiae_contig1883:22081..22647+ (Laminarionema elsbetiae ELsaHSoW15)
ATATACGTCTCTGTCTCTGGATCTATTTTTCTACACCTCCGAGTACCGGG
TCAGTCGACGATACCTGGGTCAGGTCGCGACAATTCCGCTGCTGCTGCTA
GTATACGATATACGTCTCTGTCTCTGGATCTATTTTTCTACACCTCCGAG
TACCGGGTCAGTCGACGATACCTGGGTCAGGTCGCGACAATTCCGCTGCT
GCTGCTAGTATACGGTCCCGTACACGGTGGCCACGACGAAATGCTCCTCG
GTGGTTGTCCTGGTTCGTTCGACACAACTGGGGCACAAAAGTCGAGGTCC
CGTACACGGTGGCCACGACGAAATGCTCCTCGGTGGTTGTCCTGGTTCGT
TCGACACAACTGGGGCACAAAAGTCGAG
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