mRNA_L-elsbetiae_contig1883.5523.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1883.5523.1
Unique NamemRNA_L-elsbetiae_contig1883.5523.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1883.5523.1 vs. uniprot
Match: B2KWI7_ECTSI (EsV-1-213-like protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI7_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 1.700e-6
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = -3 
Query:    2 HWSHLDNSSEKGRTKLEQRRNAVDR 76
            HW+HLDNSSEKGRTKLEQRRNAVDR
Sbjct:  123 HWAHLDNSSEKGRTKLEQRRNAVDR 147
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BLAST of mRNA_L-elsbetiae_contig1883.5523.1 vs. uniprot
Match: A0A6H5L2T2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2T2_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.710e-6
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = -3 
Query:    2 HWSHLDNSSEKGRTKLEQRRNAVDR 76
            HW+HLDNSSEKGRTKLEQRRNAVDR
Sbjct:  123 HWAHLDNSSEKGRTKLEQRRNAVDR 147
[Close]
BLAST of mRNA_L-elsbetiae_contig1883.5523.1 vs. uniprot
Match: A0A6H5K0T8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T8_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.710e-6
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = -3 
Query:    2 HWSHLDNSSEKGRTKLEQRRNAVDR 76
            HW+HLDNSSEKGRTKLEQRRNAVDR
Sbjct:  123 HWAHLDNSSEKGRTKLEQRRNAVDR 147
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1883.5523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
B2KWI7_ECTSI1.700e-696.00EsV-1-213-like protein 1 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L2T2_9PHAE1.710e-696.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0T8_9PHAE1.710e-696.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1883contigL-elsbetiae_contig1883:10061..11146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size161
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.581012-CDS-L-elsbetiae_contig1883:10060..101361622815783.581012-CDS-L-elsbetiae_contig1883:10060..10136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1883 10061..10136 +
1691683099.8950272-CDS-L-elsbetiae_contig1883:10060..101361691683099.8950272-CDS-L-elsbetiae_contig1883:10060..10136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1883 10061..10136 +
1622815783.5905468-CDS-L-elsbetiae_contig1883:11063..111461622815783.5905468-CDS-L-elsbetiae_contig1883:11063..11146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1883 11064..11146 +
1691683099.9063315-CDS-L-elsbetiae_contig1883:11063..111461691683099.9063315-CDS-L-elsbetiae_contig1883:11063..11146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1883 11064..11146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1883.5523.1prot_L-elsbetiae_contig1883.5523.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1883 10061..11146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1883.5523.1

>prot_L-elsbetiae_contig1883.5523.1 ID=prot_L-elsbetiae_contig1883.5523.1|Name=mRNA_L-elsbetiae_contig1883.5523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=53bp
ACLRRCDVVRVWSSPFPRSCPDATSGLPKEHGFEYLEHRNSLRTSTTLHG
HSP
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mRNA from alignment at L-elsbetiae_contig1883:10061..11146+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1883.5523.1 ID=mRNA_L-elsbetiae_contig1883.5523.1|Name=mRNA_L-elsbetiae_contig1883.5523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig1883:10061..11146+ (Laminarionema elsbetiae ELsaHSoW15)
GCCTGTCTACGGCGTTGCGACGTTGTTCGAGTTTGGTCCTCCCCTTTTCC
GAGGAGTTGTCCAGATGCGACCAGTGGTACGTTGCGGCATTGAGCTTGAT
TCTGTTCTGCAACAGCTTGGGGAAAAGCTGGGCGTACACAATATATCCCA
TCAACGTCTTGTTGTCGTGAAACGATTCGGTCCAGGCAAGCTCTTCGCCT
TTGGGCAAGTGATCAAAAGGTGTCCCTTTGCTGCTCCTGGACTCATAGAA
CACCTTGACCTGCGTGGGCGTCGGCGCGCTGAAGACGTTGTCGATCGTGA
CCGGGCACCGGAAAGTCATTTTCGTGTGCGTTTTCGATTCGGCCACGTCT
TTCTCATCGAATGCCATGTTGTCGAGCGTCGTCACGGATTCTTTTGCTGA
CGATGAAACTTTCACGCGCTTGTTGGCGCGAGAAGAGGCCATGGCTTAGA
ATGAGACTAGGGGGGGGGCCTCATTCCACACCAAAGTTATTTACTAACAA
TCATGGTGAAGCATCGCTTGTTTCCTGTGGTTTCCGTACCGTGCTCTGGT
CTGAGTTGTTGTTGGAGTCCCGACCGCTGCCACTTCCGGCGGTTCCCCGT
ACCGCGCCCTGGTTTGAATTGTTGTTCGAATCACCACCAGTGCTACTGCT
ACCCCCGCCACCAACCGCTGTATATTTGGTTAGCAGACACTTGGTCATTG
GAATGGTCTCGTTGTGCATCTTGTTGTTGATACAACAACTCGTTTTGCGG
AAGTTAAGGGGCGGACGTCAACAATCAAAAACATTATCGTGTTCGTGTAC
AAATGTGCTGTCGTCCATCTCGGAGACGTCACTCCTGATGAAACGGAAGA
CGTTCCGTCCTTCCCCGTGTTCGACAGAGCACAAGGGAGGGAAGTCAGTC
TACGCCGACCGATATGATTCAACTAGTACTCGTGCCCAATGGTGCAAAAA
GCCGGGAAGTTCTCAGCCTACCCTATCTCATCGGTGGCTGCGTGGTTTGA
CAGGCTTACCCAAAGAGCACGGTTTCGAGTACCTGGAGCACCGTAATAGT
TTGAGGACTTCCACGACGTTGCACGGACATTCTCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1883:10061..11146+

>mRNA_L-elsbetiae_contig1883.5523.1 ID=mRNA_L-elsbetiae_contig1883.5523.1|Name=mRNA_L-elsbetiae_contig1883.5523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig1883:10061..11146+ (Laminarionema elsbetiae ELsaHSoW15)
GCCTGTCTACGGCGTTGCGACGTTGTTCGAGTTTGGTCCTCCCCTTTTCC
GAGGAGTTGTCCAGATGCGACCAGTGGCCTGTCTACGGCGTTGCGACGTT
GTTCGAGTTTGGTCCTCCCCTTTTCCGAGGAGTTGTCCAGATGCGACCAG
TGGCTTACCCAAAGAGCACGGTTTCGAGTACCTGGAGCACCGTAATAGTT
TGAGGACTTCCACGACGTTGCACGGACATTCTCCAGCTTACCCAAAGAGC
ACGGTTTCGAGTACCTGGAGCACCGTAATAGTTTGAGGACTTCCACGACG
TTGCACGGACATTCTCCA
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