mRNA_L-elsbetiae_contig18815.5514.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18815.5514.1
Unique NamemRNA_L-elsbetiae_contig18815.5514.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18815.5514.1 vs. uniprot
Match: D7FTF9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF9_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-7
Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   85 MALTPQKAKAMTVAKLKEELAERGLATDGKKAVLMERLMGAVTGSEAGAETAG 243
            M LTPQKAK++TVAKL++EL ERGLA+DG KAVL+ERL+  +   ++ AET G
Sbjct:    1 MELTPQKAKSLTVAKLRDELTERGLASDGLKAVLVERLVSHI---QSEAETKG 50
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18815.5514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTF9_ECTSI1.630e-762.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18815contigL-elsbetiae_contig18815:800..2498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.1398144-CDS-L-elsbetiae_contig18815:799..9761622815783.1398144-CDS-L-elsbetiae_contig18815:799..976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18815 800..976 +
1691683099.6261177-CDS-L-elsbetiae_contig18815:799..9761691683099.6261177-CDS-L-elsbetiae_contig18815:799..976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18815 800..976 +
1622815783.1505413-CDS-L-elsbetiae_contig18815:2361..24961622815783.1505413-CDS-L-elsbetiae_contig18815:2361..2496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18815 2362..2496 +
1691683099.6355896-CDS-L-elsbetiae_contig18815:2361..24961691683099.6355896-CDS-L-elsbetiae_contig18815:2361..2496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18815 2362..2496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18815.5514.1prot_L-elsbetiae_contig18815.5514.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18815 800..2496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18815.5514.1

>prot_L-elsbetiae_contig18815.5514.1 ID=prot_L-elsbetiae_contig18815.5514.1|Name=mRNA_L-elsbetiae_contig18815.5514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
VERTTRAFPLFFCSLRLPPPQHESYESKMALTPQKAKAMTVAKLKEELAE
RGLATDGKKAVLMERLMGAVTGSEAGAETAGEPGTAAEPDEAAETDEAMK
TEDA
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mRNA from alignment at L-elsbetiae_contig18815:800..2498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18815.5514.1 ID=mRNA_L-elsbetiae_contig18815.5514.1|Name=mRNA_L-elsbetiae_contig18815.5514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1699bp|location=Sequence derived from alignment at L-elsbetiae_contig18815:800..2498+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGAGCGTACAACCCGAGCGTTCCCGCTTTTTTTTTGCTCTCTCCGCCT
CCCGCCGCCCCAGCACGAGAGTTACGAGAGCAAGATGGCGCTCACTCCCC
AAAAGGCAAAGGCCATGACCGTGGCAAAGCTCAAGGAAGAGCTGGCCGAG
AGGGGCCTCGCCACAGACGGGAAGAAGGTGAGTCTTGGCGTAGCTTCCCG
CGTTTGATTGAGTTTGCGGACATGCAAGAAAGTGCGGCATGGCATGGGAG
AGGATGGCGCAAAACATTTTGTGGTGTTGGTCTCGAAGACCAACCCTTCC
CCGCGCCGGGCGTTCAGCCGGGGTGGGGCTTATCGAAGGCGGGGTGGCAT
AGCGAGTGCCAACTTCTGCGGCCGTGGTGCGTTCCGCGAGTCGTCACTCC
TTTCGGCCTGTCCTCCGCGGCCCGATCCACACGTTTCGCTCAGCATGTCC
CCATCGCGATCGTCAAAAAATTACTTGAAAATAGAGTTACGCAGTAAAAA
GCGCGCGCCCCGCGTGTGTTTCGGACGGGGGGGGCGCACGTTGCGGCTCC
CCTGCGCACTGCCGTGTTCCGGCAGATGGGTCACGGTGCTTGCAAGGGTT
TGGGTGCCGACAGATTGGGATGCCCGTTGTCACGCGATTATGATCCGGGT
GCCAGTTCATTTCGCAATCTGAAACGCCATTTTGTTTTTTTGGCCTCTCT
CTCCCCCAGTAAAAACACACCTGTGTACCCTAGTACCGACCTACCTTAGT
CCGCCTTCGATCGGCGTTTGTCTCGGTGTGGTGTTGTGCTGGGTTGTGTG
TCATGACGAGAGAGAGAGAGACACGCAAGCATTAGTGCGAGCTGCGGTGA
CTTGTCGGCAGTGTGGCTGTCGATTACACCAGAGGGTCGAAAATGTCAGA
TGGTTCGTGGCAAGGCAGCAGTGCTTCTTGTGCTTATGCTGTGTCGATGT
GCGAGAAAGGTCCTTCGTGTCGGCGCTCTGTCCGCCCGCGTCAGGCTCTA
AACCCGCTATGTGTTCGAACATGGCGTGGGGATGCGGCACGACAGCAGCG
CACGCAGAGCCCCTGCTGCCCCCTGTGCTGTTGGCGTCATTTTTTTTTTT
TTTTCGTGTACCTTTTCTTGGGTATAAGTTAGCCTGCTGCGACCACGGGA
ATTGACCGCATCAAGTGTTGCATTAGTACGGACATTGAGAGGTACTGGAT
GGAGAGATCGGAACGGCTTTTAATGTGAAGACAACATACATACATACAGA
CAGACAGACAGCTTAGAAGCCATGGAAGATACATCAAACATACCGCAGCA
GGACATCATCTTACACACACGTGTGTTTACACTTTTCACGGCCGCCTTGG
GGCTCCCCTCCTCAGTACCTTTTGAGCGCAAGAGGTGTGCGATGGTGATG
CCGAACACGTGCATGGGGCAAAAAAAAATCCTGGTCCCACATACATAATG
TCTGGGTTTTTCGCTTGTCGCCGCTTAACGATGTGCTGCCCCCCGGACGC
CCTCTCTCGTGCTTGACCTTTTCGTGCATATGTACATACACACATGACCG
TGGTGTCATCAGGCGGTCCTGATGGAGAGGCTCATGGGCGCCGTCACGGG
CAGCGAGGCAGGGGCAGAGACGGCTGGAGAGCCCGGCACGGCCGCAGAGC
CCGATGAGGCTGCAGAGACCGACGAGGCCATGAAAACCGAGGACGCTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18815:800..2498+

>mRNA_L-elsbetiae_contig18815.5514.1 ID=mRNA_L-elsbetiae_contig18815.5514.1|Name=mRNA_L-elsbetiae_contig18815.5514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig18815:800..2498+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGAGCGTACAACCCGAGCGTTCCCGCTTTTTTTTTGCTCTCTCCGCCT
CCCGCCGCCCCAGCACGAGAGTTACGAGAGCAAGATGGCGCTCACTCCCC
AAAAGGCAAAGGCCATGACCGTGGCAAAGCTCAAGGAAGAGCTGGCCGAG
AGGGGCCTCGCCACAGACGGGAAGAAGGTCGAGCGTACAACCCGAGCGTT
CCCGCTTTTTTTTTGCTCTCTCCGCCTCCCGCCGCCCCAGCACGAGAGTT
ACGAGAGCAAGATGGCGCTCACTCCCCAAAAGGCAAAGGCCATGACCGTG
GCAAAGCTCAAGGAAGAGCTGGCCGAGAGGGGCCTCGCCACAGACGGGAA
GAAGGCGGTCCTGATGGAGAGGCTCATGGGCGCCGTCACGGGCAGCGAGG
CAGGGGCAGAGACGGCTGGAGAGCCCGGCACGGCCGCAGAGCCCGATGAG
GCTGCAGAGACCGACGAGGCCATGAAAACCGAGGACGCTGCGGTCCTGAT
GGAGAGGCTCATGGGCGCCGTCACGGGCAGCGAGGCAGGGGCAGAGACGG
CTGGAGAGCCCGGCACGGCCGCAGAGCCCGATGAGGCTGCAGAGACCGAC
GAGGCCATGAAAACCGAGGACGCT
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