mRNA_L-elsbetiae_contig18814.5512.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18814.5512.1
Unique NamemRNA_L-elsbetiae_contig18814.5512.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18814.5512.1 vs. uniprot
Match: D7FZK2_ECTSI (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK2_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 7.890e-29
Identity = 55/64 (85.94%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:  208 QCGSEYVRGKDDVVNTAVGACMAAGAAGLKTGKISHACAGCLGGALLMSTVRLGTDANGSKAMD 399
            +CGSEYVRGKDD VN+AVGACMAAGAAGLKTGKISHACAGCLGGA++MS VRLGTD NGSK++D
Sbjct:   81 ECGSEYVRGKDDAVNSAVGACMAAGAAGLKTGKISHACAGCLGGAVIMSAVRLGTDINGSKSLD 144
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18814.5512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZK2_ECTSI7.890e-2985.94Mitochondrial import inner membrane translocase su... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18814contigL-elsbetiae_contig18814:524..1393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionNADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11-like
Ec32 orthologEc-01_010150.1
Exons2
Model size402
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.0336237-CDS-L-elsbetiae_contig18814:523..8911622815783.0336237-CDS-L-elsbetiae_contig18814:523..891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18814 524..891 +
1691683099.5681572-CDS-L-elsbetiae_contig18814:523..8911691683099.5681572-CDS-L-elsbetiae_contig18814:523..891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18814 524..891 +
1622815783.0458598-CDS-L-elsbetiae_contig18814:1360..13911622815783.0458598-CDS-L-elsbetiae_contig18814:1360..1391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18814 1361..1391 +
1691683099.5802042-CDS-L-elsbetiae_contig18814:1360..13911691683099.5802042-CDS-L-elsbetiae_contig18814:1360..1391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18814 1361..1391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18814.5512.1prot_L-elsbetiae_contig18814.5512.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18814 524..1391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18814.5512.1

>prot_L-elsbetiae_contig18814.5512.1 ID=prot_L-elsbetiae_contig18814.5512.1|Name=mRNA_L-elsbetiae_contig18814.5512.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
STLNIFALCHRALASHPFLPLLPRWWKPHTDGKKTTGGLNQSMDRHSGPD
ANGGGNNSLRPFGTDTRGEQCGSEYVRGKDDVVNTAVGACMAAGAAGLKT
GKISHACAGCLGGALLMSTVRLGTDANGSKAMD
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mRNA from alignment at L-elsbetiae_contig18814:524..1393+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18814.5512.1 ID=mRNA_L-elsbetiae_contig18814.5512.1|Name=mRNA_L-elsbetiae_contig18814.5512.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig18814:524..1393+ (Laminarionema elsbetiae ELsaHSoW15)
TCGACGCTCAATATTTTTGCTCTCTGCCACCGTGCGCTCGCTTCGCACCC
GTTTCTTCCACTACTTCCGCGGTGGTGGAAACCCCACACCGACGGCAAAA
AAACAACTGGCGGTCTGAACCAATCAATGGACCGACACTCTGGACCGGAC
GCAAACGGTGGTGGAAACAACTCTTTGCGGCCTTTTGGGACGGATACTCG
GGGTGAACAGTGCGGATCGGAGTACGTGAGGGGTAAGGATGACGTAGTCA
ATACCGCCGTGGGGGCGTGCATGGCCGCCGGCGCCGCGGGGCTGAAGACG
GGGAAGATCTCGCACGCGTGCGCGGGGTGCCTCGGAGGCGCGTTGCTCAT
GTCGACCGTCAGACTCGGGTGAGAGATATAATGGAGAATGTGTGTGCGTG
TGTACTCGAGAGAGGGACAGGGGTCGAATTCGAAGGGAGCGAGACAGGAT
GACAGACAGGAAGAGAGAACAAGAGGAGGAGAGAGAACAGAGAGGTATAG
ATGCAGAGAGAGATATATAGATAGAGAGAGAGAGAGAGAAAGAGAGAGAT
AACAGATAGATAAGAGATGAGAGGAGCACAAAGGCAGACAGACAGATGGG
CAAGCGAAGAGAGCACTACTTCGCGTGGAGCAGATTGTATCTTGAGTTGG
TTCAGGAGAAGCTTTCTTTGGGACGCATGCGCTATCCGTCTCCGATTGCG
ACCATCTGTTTTAGTCTGGGCAACTTAATACTAGCTCCTGTTGGTAGAAG
AAGTGTTTTCGTCGCCCCAAAGAATATGCCCCGCCTCGCCGTTCTTGTTT
TTTTTCTTCCCTGCACGCTGGTATTTCTGCCTTCCAGGACCGACGCGAAC
GGCAGCAAGGCGATGGACAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18814:524..1393+

>mRNA_L-elsbetiae_contig18814.5512.1 ID=mRNA_L-elsbetiae_contig18814.5512.1|Name=mRNA_L-elsbetiae_contig18814.5512.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig18814:524..1393+ (Laminarionema elsbetiae ELsaHSoW15)
TCGACGCTCAATATTTTTGCTCTCTGCCACCGTGCGCTCGCTTCGCACCC
GTTTCTTCCACTACTTCCGCGGTGGTGGAAACCCCACACCGACGGCAAAA
AAACAACTGGCGGTCTGAACCAATCAATGGACCGACACTCTGGACCGGAC
GCAAACGGTGGTGGAAACAACTCTTTGCGGCCTTTTGGGACGGATACTCG
GGGTGAACAGTGCGGATCGGAGTACGTGAGGGGTAAGGATGACGTAGTCA
ATACCGCCGTGGGGGCGTGCATGGCCGCCGGCGCCGCGGGGCTGAAGACG
GGGAAGATCTCGCACGCGTGCGCGGGGTGCCTCGGAGGCGCGTTGCTCAT
GTCGACCGTCAGACTCGGTCGACGCTCAATATTTTTGCTCTCTGCCACCG
TGCGCTCGCTTCGCACCCGTTTCTTCCACTACTTCCGCGGTGGTGGAAAC
CCCACACCGACGGCAAAAAAACAACTGGCGGTCTGAACCAATCAATGGAC
CGACACTCTGGACCGGACGCAAACGGTGGTGGAAACAACTCTTTGCGGCC
TTTTGGGACGGATACTCGGGGTGAACAGTGCGGATCGGAGTACGTGAGGG
GTAAGGATGACGTAGTCAATACCGCCGTGGGGGCGTGCATGGCCGCCGGC
GCCGCGGGGCTGAAGACGGGGAAGATCTCGCACGCGTGCGCGGGGTGCCT
CGGAGGCGCGTTGCTCATGTCGACCGTCAGACTCGGGACCGACGCGAACG
GCAGCAAGGCGATGGACGACCGACGCGAACGGCAGCAAGGCGATGGAC
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