mRNA_L-elsbetiae_contig188.5506.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig188.5506.1
Unique NamemRNA_L-elsbetiae_contig188.5506.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig188.5506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig188contigL-elsbetiae_contig188:27592..27983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size392
Cds size348
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.0366058-UTR-L-elsbetiae_contig188:27591..276351622815782.0366058-UTR-L-elsbetiae_contig188:27591..27635Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig188 27592..27635 +
1691683098.8515947-UTR-L-elsbetiae_contig188:27591..276351691683098.8515947-UTR-L-elsbetiae_contig188:27591..27635Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig188 27592..27635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.0470786-CDS-L-elsbetiae_contig188:27635..279831622815782.0470786-CDS-L-elsbetiae_contig188:27635..27983Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig188 27636..27983 +
1691683098.8596263-CDS-L-elsbetiae_contig188:27635..279831691683098.8596263-CDS-L-elsbetiae_contig188:27635..27983Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig188 27636..27983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig188.5506.1prot_L-elsbetiae_contig188.5506.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig188 27636..27983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig188.5506.1

>prot_L-elsbetiae_contig188.5506.1 ID=prot_L-elsbetiae_contig188.5506.1|Name=mRNA_L-elsbetiae_contig188.5506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
MFVGVKEGGVSVLFSTTHARATMVPPSSTHDLGRLAGCVWLFVRLFWCVA
VLLLRVVCAIASVIGPSIWGPSKTNCIIILLRVASWHGMAWHGIACARAR
ACLPACLPLVDITWG*
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mRNA from alignment at L-elsbetiae_contig188:27592..27983+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig188.5506.1 ID=mRNA_L-elsbetiae_contig188.5506.1|Name=mRNA_L-elsbetiae_contig188.5506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=392bp|location=Sequence derived from alignment at L-elsbetiae_contig188:27592..27983+ (Laminarionema elsbetiae ELsaHSoW15)
GACACACAGCACGGGGTTAGTTTTCCCCGCATACGTACCGTGGAATGTTT
GTGGGTGTAAAAGAGGGGGGCGTTTCCGTTTTATTTTCGACCACACACGC
GCGGGCAACGATGGTCCCACCATCTTCTACACACGACCTTGGTCGCCTCG
CCGGGTGTGTATGGTTGTTCGTTCGTTTGTTCTGGTGTGTTGCTGTTCTC
TTGCTTCGTGTCGTTTGTGCGATCGCATCGGTCATCGGCCCATCGATCTG
GGGCCCTTCTAAAACTAACTGTATCATTATCTTGTTGCGCGTGGCATCAT
GGCATGGCATGGCATGGCATGGCATAGCCTGTGCGCGCGCGCGCGCGTGC
CTGCCTGCGTGCCTGCCGCTGGTTGACATTACTTGGGGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig188:27592..27983+

>mRNA_L-elsbetiae_contig188.5506.1 ID=mRNA_L-elsbetiae_contig188.5506.1|Name=mRNA_L-elsbetiae_contig188.5506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig188:27592..27983+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTGTGGGTGTAAAAGAGGGGGGCGTTTCCGTTTTATTTTCGACCAC
ACACGCGCGGGCAACGATGGTCCCACCATCTTCTACACACGACCTTGGTC
GCCTCGCCGGGTGTGTATGGTTGTTCGTTCGTTTGTTCTGGTGTGTTGCT
GTTCTCTTGCTTCGTGTCGTTTGTGCGATCGCATCGGTCATCGGCCCATC
GATCTGGGGCCCTTCTAAAACTAACTGTATCATTATCTTGTTGCGCGTGG
CATCATGGCATGGCATGGCATGGCATGGCATAGCCTGTGCGCGCGCGCGC
GCGTGCCTGCCTGCGTGCCTGCCGCTGGTTGACATTACTTGGGGTTGAAT
GTTTGTGGGTGTAAAAGAGGGGGGCGTTTCCGTTTTATTTTCGACCACAC
ACGCGCGGGCAACGATGGTCCCACCATCTTCTACACACGACCTTGGTCGC
CTCGCCGGGTGTGTATGGTTGTTCGTTCGTTTGTTCTGGTGTGTTGCTGT
TCTCTTGCTTCGTGTCGTTTGTGCGATCGCATCGGTCATCGGCCCATCGA
TCTGGGGCCCTTCTAAAACTAACTGTATCATTATCTTGTTGCGCGTGGCA
TCATGGCATGGCATGGCATGGCATGGCATAGCCTGTGCGCGCGCGCGCGC
GTGCCTGCCTGCGTGCCTGCCGCTGGTTGACATTACTTGGGGTTGA
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