mRNA_L-elsbetiae_contig18756.5491.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18756.5491.1
Unique NamemRNA_L-elsbetiae_contig18756.5491.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18756.5491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18756contigL-elsbetiae_contig18756:341..2358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size282
Cds size282
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18756.5491.1prot_L-elsbetiae_contig18756.5491.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18756 341..2358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.7422645-CDS-L-elsbetiae_contig18756:340..4201622815780.7422645-CDS-L-elsbetiae_contig18756:340..420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18756 341..420 -
1691683097.967742-CDS-L-elsbetiae_contig18756:340..4201691683097.967742-CDS-L-elsbetiae_contig18756:340..420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18756 341..420 -
1622815780.75455-CDS-L-elsbetiae_contig18756:1033..11261622815780.75455-CDS-L-elsbetiae_contig18756:1033..1126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18756 1034..1126 -
1691683097.9791522-CDS-L-elsbetiae_contig18756:1033..11261691683097.9791522-CDS-L-elsbetiae_contig18756:1033..1126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18756 1034..1126 -
1622815780.8019602-CDS-L-elsbetiae_contig18756:2249..23581622815780.8019602-CDS-L-elsbetiae_contig18756:2249..2358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18756 2250..2358 -
1691683097.9893239-CDS-L-elsbetiae_contig18756:2249..23581691683097.9893239-CDS-L-elsbetiae_contig18756:2249..2358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18756 2250..2358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18756.5491.1

>prot_L-elsbetiae_contig18756.5491.1 ID=prot_L-elsbetiae_contig18756.5491.1|Name=mRNA_L-elsbetiae_contig18756.5491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
ASGEGPGTGERRTTAAAAAAAAGGGSSACGGSQEDRGRSSRSSSAQGFTG
SGADCTDTNTCRSGEGRGRRRSSPAGGTGTRVRGGLARGESPGG
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mRNA from alignment at L-elsbetiae_contig18756:341..2358-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18756.5491.1 ID=mRNA_L-elsbetiae_contig18756.5491.1|Name=mRNA_L-elsbetiae_contig18756.5491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2018bp|location=Sequence derived from alignment at L-elsbetiae_contig18756:341..2358- (Laminarionema elsbetiae ELsaHSoW15)
GCAAGCGGCGAAGGCCCAGGCACAGGCGAGAGAAGGACAACTGCAGCAGC
AGCAGCAGCAGCAGCAGGCGGAGGAAGCTCGGCGTGTGGAGGCTCTCAGG
AGGATCGAGGTATGGGCTTGGTGTAGGGCACTTGGCGGGCGAGGGGGGGC
GGGAGGGAGGGAGGGGGGGTGGGGTAATTTCTTTGGCTGGCCGCTCACGG
AGCCCCTTTCGAGATGGAGCCCTGTTTTGAAGGAACTTGGGGGGGGGGGG
GGGGGTGTCGTGTTGGATGCAAGTCTGTGCAGATGTGTCGAATTGTATGG
TACTTACCGCTGTGTTGTGCATTGAGCGATTTGTCTTTCGTGTAATGCAT
CTTGGCTGGTGTCTTGAGTTGTTGAGGGCGAGCGTGCGCTTCGGCCTGCT
GTATTCGCATGTATTTAAGCATGTAACGTATTCGACGCAAGATAACACAC
CCCCTGGGCCGATTTTCAAAGCCTGAGCACTCCACAGCGAGAAGAATGTC
AAGTCCCGAAAAGGGCGGCGTTGGAAAGTTCTCATCAAGAGCTGCCCGAA
AACGTGTCGTTTGGTATTAGGATCACACTCGTTGCGAAGTAACCGAGCTT
GGAAAATCGGTCCAGGGGGTGTGTTATCTTGTGCTGTATACGGTTATATG
TATGTATGTATTTATGTATGTACCGAAATGTTGATGACCAGTGGCGCATT
CGTACCAAAACGGTGTTGCGCGTTGGTGGGTATGTCAACGACGCAGAGTC
GTCGATATGACACCACAGTTTTTTATTTTTATTCTTTAACTTTGGTGTAG
ATACATATGAGTAGTTTTAGTGCCGGCCGAACGACATTGCTACATACATC
CGTGTGTGTGCGTCTTCTCGTGACTATTGTCGGCGTTAATAGTAACCCGC
AACGGTCAAACACGGATTTTGTGTTTTTTTGTCGCTTGTGTCGCTTTTGT
GAAACGATTGTGTTTCTGATTCTTGTTTTAATTAATGCATACAAATGGCA
GCAGCCTACGTCCAGTCTGTGAAAAAGCCGTTCCAGAGGGAACTCTTGTT
TTATCTTTTCTTTTCTTTTTTGTCTCAGTTGCTTTTTACGAAGTATGTAA
CTATTTGTTCTGATTCTTGGTATGTATCGCTCATGTATATTGTACAGACA
TATTTTTCCTGTCCTGTCTCTCGTCTTTTTACGTACGTATACATATCGGT
CGTCTGCACCGTTTCCCCCCCCCCCCGAAAAGGCCGCAGCAGCCGCAGCA
GCAGTGCCCAAGGCTTCACCGGCTCCGGCGCCGACTGCACGGACACCAAC
ACCTGCAGAAGCGGCGAGGGGAGAGGTGCGCCGCATTTTTGGGCGGGCGC
CATTTTTTTTTTTTTTTAGTTTTGGTCTTGCGTGGCGGTCGTGCTGCTGC
CGCCGGCGGCGGCAGCTACAAGCCAATCCAATGAGGGGACTCCGTGAAGA
AAGGGGGCTCGGTGTTCCAGGAAGATGGCATACGCTGCGATACCTCCCTC
CGCAGGGCATGCTTTCACGGGGCCTATTTGGAGCTGCTGCTGCTGCCCCT
TCCCACTCTTTTAGTGGATCCTAGGATCCTGTTTTTTGACATTTCATCGT
CTAAGTACGAAGTACCATACACATGTTATGGTATGTAATTTTGTGGAAAA
TAAACTCAACAAGCGTATTTGTGGTTTCTTTCCAGCCTGAGGCGTTCGGG
GGCGCCGTGAGTGAACATTCTGTGGTTTCGTGTGTCAAACCCCTACCCTC
TTCGTTTGAACGTACACAGTATTCGTCGGTTACATATGTATCCTTGACCC
GATTGCGCAACGGGTCTTCAAACAACCACTACCGCTACCACCACGGACCT
CACCCCACCACCACGAACAACAACACTAACCACCACACCACCACCACCAC
CACCACCACCACCACCACCACAACAACAACCACAACAGGTCGACGACGCT
CCTCCCCCGCTGGGGGCACCGGTACTCGGGTGCGCGGGGGGCTGGCTCGG
GGCGAGAGTCCGGGCGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18756:341..2358-

>mRNA_L-elsbetiae_contig18756.5491.1 ID=mRNA_L-elsbetiae_contig18756.5491.1|Name=mRNA_L-elsbetiae_contig18756.5491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig18756:341..2358- (Laminarionema elsbetiae ELsaHSoW15)
GCAAGCGGCGAAGGCCCAGGCACAGGCGAGAGAAGGACAACTGCAGCAGC
AGCAGCAGCAGCAGCAGGCGGAGGAAGCTCGGCGTGTGGAGGCTCTCAGG
AGGATCGAGGCAAGCGGCGAAGGCCCAGGCACAGGCGAGAGAAGGACAAC
TGCAGCAGCAGCAGCAGCAGCAGCAGGCGGAGGAAGCTCGGCGTGTGGAG
GCTCTCAGGAGGATCGAGGCCGCAGCAGCCGCAGCAGCAGTGCCCAAGGC
TTCACCGGCTCCGGCGCCGACTGCACGGACACCAACACCTGCAGAAGCGG
CGAGGGGAGAGGCCGCAGCAGCCGCAGCAGCAGTGCCCAAGGCTTCACCG
GCTCCGGCGCCGACTGCACGGACACCAACACCTGCAGAAGCGGCGAGGGG
AGAGGTCGACGACGCTCCTCCCCCGCTGGGGGCACCGGTACTCGGGTGCG
CGGGGGGCTGGCTCGGGGCGAGAGTCCGGGCGGAGTCGACGACGCTCCTC
CCCCGCTGGGGGCACCGGTACTCGGGTGCGCGGGGGGCTGGCTCGGGGCG
AGAGTCCGGGCGGA
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